mRNA_C-tenellus_contig11081.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11081.1.1
Unique NamemRNA_C-tenellus_contig11081.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11081.1.1 vs. uniprot
Match: A0A6H5JKM2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKM2_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.130e-31
Identity = 84/199 (42.21%), Postives = 111/199 (55.78%), Query Frame = 1 
Query:  310 IFFANRAQVDTKVLLQAAEYTTKRATTDTGRLLLAATGAASPALALMGVN-ATEAQNRLNTSVQLMALGILPESIGTTPQLLGSLKDFDDEDKRITAAFKR---------------------------------------------------------------QRRQRSKPLPAKILGALPSTVNKALDIDYEVEQEV 714
            I+ ANR ++D+K +    +Y +K+A   TG+LLLAA+GA SPAL LMGVN  TE Q  LN SVQL+++GI+P+SI  +P+LL SLKDFDD+DKR+ AA++R                                                               QRR+RSKPLPA++LG+LPST+NKA D+ YEVEQEV
Sbjct:    7 IYVANRPRIDSKAVKAVVDYASKQAAAGTGKLLLAASGAGSPALLLMGVNNTTETQAALNNSVQLLSMGIVPDSISLSPKLLASLKDFDDDDKRLDAAYQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGQTGNRAARRRQSSFRLQLQRRRRSKPLPARLLGSLPSTINKASDLAYEVEQEV 205
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11081.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JKM2_9PHAE2.130e-3142.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11081contigC-tenellus_contig11081:169..1638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size738
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_003600.1
Cds size726
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789162.0146313-CDS-C-tenellus_contig11081:168..2941680789162.0146313-CDS-C-tenellus_contig11081:168..294Choristocarpus tenellus KU2346CDSC-tenellus_contig11081 169..294 -
1680789162.027292-CDS-C-tenellus_contig11081:486..6671680789162.027292-CDS-C-tenellus_contig11081:486..667Choristocarpus tenellus KU2346CDSC-tenellus_contig11081 487..667 -
1680789162.0371394-CDS-C-tenellus_contig11081:964..10881680789162.0371394-CDS-C-tenellus_contig11081:964..1088Choristocarpus tenellus KU2346CDSC-tenellus_contig11081 965..1088 -
1680789162.0497437-CDS-C-tenellus_contig11081:1331..16261680789162.0497437-CDS-C-tenellus_contig11081:1331..1626Choristocarpus tenellus KU2346CDSC-tenellus_contig11081 1332..1626 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789162.062668-UTR-C-tenellus_contig11081:1626..16381680789162.062668-UTR-C-tenellus_contig11081:1626..1638Choristocarpus tenellus KU2346UTRC-tenellus_contig11081 1627..1638 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11081.1.1prot_C-tenellus_contig11081.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11081 169..1626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11081.1.1

>prot_C-tenellus_contig11081.1.1 ID=prot_C-tenellus_contig11081.1.1|Name=mRNA_C-tenellus_contig11081.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=242bp
MDARVLDELLSDPAFRESLQKQDIKVADVGDSGEEEKPRNTTAQAEGLKS
KGGLTVPGWPGFGVGSSTYESVTMQAVEGLQNSVRGLMARVSATIESAGI
FFANRAQVDTKVLLQAAEYTTKRATTDTGRLLLAATGAASPALALMGVNA
TEAQNRLNTSVQLMALGILPESIGTTPQLLGSLKDFDDEDKRITAAFKRQ
RRQRSKPLPAKILGALPSTVNKALDIDYEVEQEVNRGGYYS*
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mRNA from alignment at C-tenellus_contig11081:169..1638-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11081.1.1 ID=mRNA_C-tenellus_contig11081.1.1|Name=mRNA_C-tenellus_contig11081.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1470bp|location=Sequence derived from alignment at C-tenellus_contig11081:169..1638- (Choristocarpus tenellus KU2346)
CAGTTGTCAGATATGGACGCTCGCGTTCTAGATGAACTCCTTAGTGACCC
AGCTTTCAGGGAGTCCTTACAGAAGCAGGACATCAAAGTCGCAGATGTTG
GTGACTCTGGGGAGGAAGAAAAACCTAGGAACACCACTGCCCAAGCGGAG
GGACTGAAAAGTAAAGGGGGACTGACAGTTCCTGGCTGGCCTGGGTTCGG
TGTGGGGAGCAGCACGTACGAAAGTGTCACAATGCAAGCAGTAGAGGGGT
TGCAGAATTCAGTGCGTGGACTGATGGCCAGGGTGTCTGCCACCATTGAG
TCAGCAGGTACGAAGAATCCCCATCATGATGGCACCCTCAGTATGTTGAA
CTCGGTGTATCCCTTTTCTGTGCCTTTGTTCACACACTTATTTCGTGGGA
ATGAATACTCTATATATTATGTATTCTGTCCATGTCTTCAGGTTTTCATT
ACACCATCTTACATACCGATTGATCTATTGATCCGACCGTGTTGCTGTTT
TCTTGTGCTCCTTGTGTCGCTGTGTCCACCCAATTTGGGATATTGACCAG
GTATTTTCTTCGCCAACCGAGCACAGGTTGACACAAAAGTCTTGCTACAG
GCGGCGGAATATACGACAAAACGAGCAACTACAGACACGGGCCGATTGTT
GTTGGCAGCTACAGGAGCAGCCAGGTGACGGCAGCCCCTTTATAATTATA
CAAGGGGGACCTTCCTAGTGCCCTTTGGGACAGCCTTTTACTTAGTCAAG
CATAGCGTTCAAGAACAGAGAAGTGTGGGATAGGTACAGTGATTTGGCCT
GTGTTGGCCTTGGTATGGTACCTGCCTGGATGTGTGGGGTCTACCGCCCC
ATTGATAGCATGCTTTGTACCATTCAACAGCTGATCCCAAAAAAGGATTT
CTGCTATTTTGTCAGCACCCTCTCATGCTACCTACAACGCCTGCCACTTT
CACTGCCACTTCCCCTCGCAGTCCTGCACTTGCTCTCATGGGGGTGAATG
CTACAGAGGCGCAAAATAGGTTGAATACAAGCGTGCAGCTCATGGCACTC
GGAATATTGCCAGAGTCAATCGGGACAACTCCCCAGTTGTTGGGTTCCCT
CAAAGACTTTGACGATGAGGACAAGAGGATCACGGCAGCATTCAAGCGGC
AGGTGAGCGGGGGGGGCGCTCCTGTGTATTGCATGATCTGATGTACTGCA
CTTCAGGTTGGTTACAAGGGGTTTGATGCGTGTGTGCAAATGGGAGCTTA
ATTTGGTGGGAAAAATGCCTGTCTGTATGCTTTGCTAGCACAGCGCACAC
CCTCTGTTCACGCACAATGCGTTTCGCACACACCTGGCCTGCAGCGTCGT
CAGAGATCGAAGCCGTTGCCAGCCAAGATATTGGGCGCCCTTCCATCCAC
TGTGAACAAGGCCCTTGATATTGACTACGAAGTGGAGCAGGAGGTGAACC
GGGGAGGATATTATTCTTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig11081:169..1638-

>mRNA_C-tenellus_contig11081.1.1 ID=mRNA_C-tenellus_contig11081.1.1|Name=mRNA_C-tenellus_contig11081.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=726bp|location=Sequence derived from alignment at C-tenellus_contig11081:169..1638- (Choristocarpus tenellus KU2346)
ATGGACGCTCGCGTTCTAGATGAACTCCTTAGTGACCCAGCTTTCAGGGA
GTCCTTACAGAAGCAGGACATCAAAGTCGCAGATGTTGGTGACTCTGGGG
AGGAAGAAAAACCTAGGAACACCACTGCCCAAGCGGAGGGACTGAAAAGT
AAAGGGGGACTGACAGTTCCTGGCTGGCCTGGGTTCGGTGTGGGGAGCAG
CACGTACGAAAGTGTCACAATGCAAGCAGTAGAGGGGTTGCAGAATTCAG
TGCGTGGACTGATGGCCAGGGTGTCTGCCACCATTGAGTCAGCAGGTATT
TTCTTCGCCAACCGAGCACAGGTTGACACAAAAGTCTTGCTACAGGCGGC
GGAATATACGACAAAACGAGCAACTACAGACACGGGCCGATTGTTGTTGG
CAGCTACAGGAGCAGCCAGTCCTGCACTTGCTCTCATGGGGGTGAATGCT
ACAGAGGCGCAAAATAGGTTGAATACAAGCGTGCAGCTCATGGCACTCGG
AATATTGCCAGAGTCAATCGGGACAACTCCCCAGTTGTTGGGTTCCCTCA
AAGACTTTGACGATGAGGACAAGAGGATCACGGCAGCATTCAAGCGGCAG
CGTCGTCAGAGATCGAAGCCGTTGCCAGCCAAGATATTGGGCGCCCTTCC
ATCCACTGTGAACAAGGCCCTTGATATTGACTACGAAGTGGAGCAGGAGG
TGAACCGGGGAGGATATTATTCTTGA
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