mRNA_C-tenellus_contig1108.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1108.2.1
Unique NamemRNA_C-tenellus_contig1108.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1108.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1108contigC-tenellus_contig1108:5338..8070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size348
Hectar predicted targeting categoryother localisation
Exons3
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789161.8992865-CDS-C-tenellus_contig1108:5337..54071680789161.8992865-CDS-C-tenellus_contig1108:5337..5407Choristocarpus tenellus KU2346CDSC-tenellus_contig1108 5338..5407 +
1680789161.9114144-CDS-C-tenellus_contig1108:7043..72471680789161.9114144-CDS-C-tenellus_contig1108:7043..7247Choristocarpus tenellus KU2346CDSC-tenellus_contig1108 7044..7247 +
1680789161.9229808-CDS-C-tenellus_contig1108:7998..80691680789161.9229808-CDS-C-tenellus_contig1108:7998..8069Choristocarpus tenellus KU2346CDSC-tenellus_contig1108 7999..8069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1108.2.1prot_C-tenellus_contig1108.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1108 5338..8069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1108.2.1

>prot_C-tenellus_contig1108.2.1 ID=prot_C-tenellus_contig1108.2.1|Name=mRNA_C-tenellus_contig1108.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=115bp
PGYVDGLTLGEKHAHLQQGMVMQDTFLHKRPMPTVVASLLARRGSLMVGG
DRGETEIAVPGTGSSNANHRIGGDSWGPMSMQLQWRPVPSAGVNQQTQHE
KRDQWGVVTSGEING
back to top

mRNA from alignment at C-tenellus_contig1108:5338..8070+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1108.2.1 ID=mRNA_C-tenellus_contig1108.2.1|Name=mRNA_C-tenellus_contig1108.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2733bp|location=Sequence derived from alignment at C-tenellus_contig1108:5338..8070+ (Choristocarpus tenellus KU2346)
CCTGGATATGTTGATGGGCTAACGTTGGGCGAAAAGCACGCTCACTTGCA
ACAGGGTATGGTGATGCAAGGTGGCCACACGGGACAACCTGCAAACATTA
CATGAGTGGTTCTTGTGCCTCCCATCTTCGTAGCTATCTTAGTTCGTCTC
TCTCCCCTGCCTAAATTATTTTCCGCATTTGGAAGATCGTGTACTCCCAG
TGCGCGTTCCAAATAGCCCAACTTTAGAATTAGATTTCATTTTTCCTATA
GAATTATTGTCAAATAGCGACTACACACACACACTAGTTCTTGCGCTCTT
GTATTATATTTTAGTTCCCGCTGATACAGAATGCATTAGAAGCCTTGCGC
AGGGATATCAGAGCCCGAGGACAATGGTACAGGAGCAGTATTGTTGACTT
TGTGACAACTCGAAACCCTTGCATGCGACCTAAGGCTTGGTAGATAAGCA
CGGTTTTGGTCATTTTTTCAACAGCTCAGAACTTTGCAGATGATTGAGGT
GCAAGTATATGCAATTATAACGTTCGATTTACACACCTGTTACGTGAGTG
GAGGTATTTGTGATACCATTACCCATCTATCTACGACCTGAGCTCTACGA
TAAGGGTGATTGGCCATTTCTTCAATGTAGTTTATTGTATATCAGAGCTT
GCAACTTGCCAACTGTGGAATGATTCAATTGCAAACAAATCAAGTGTTGC
AGCTATGCAGTTCATGGCCAGATGACAAGGATTTTCCTTTACAACTGATC
ATTTGAAGTAGAAAAGACAATCTGTTGCGTACATACTTCACCGACTTCAC
ACCTCGTTTCCCCCTCTTAGCCATCCCGCGTCCCTCACCATGTTATTAGT
AATAATTGCCAAACTCAATCATTGTTTGTTGTTCGGAAATTGATGTACTA
CCTTGTATTCAATTATTGTGGCTGATTATTTTTACGATATTACCATGAAG
GTAAAAAAGGTGTATTTTTTTTATGTTCCTAACTATTTGAGTAGGGTATT
CATATCTTTTCAATTAGCAAGTGCTTTTTGCCAAGATGGAGAAAAGGATG
TATCTATTTCTTGCAACCTTTCAAAGCCTATCTAGGGTTATGAGTGTTGG
TATGTTCTGTTGGGAATTTGGTTGTTCAGAAGGGTGTGGGAACTACTGGG
TGGCGCTGCTGTCTATATTGGCAGAGACTCTATTGCGTATTATCCTTTAA
AAGAAGGAATGGCGGAATGAAAACTTGCACTGTCAGCTACAGTTATTTTG
TTCTCTTGATGAGTGAAGGAAATGACAAGATATTACATCTGCTTTTTTTT
ATTGAATTTTTTAATTTGCAACTTTGGATCTTGTACTAGAATTTTGTCTT
GTAGCATGTTTGAATTTGGCTGTATCCCAAAGGGATTTCTTTACCTTGGT
AAGGCATTTCCCACTTATTGGTGTGACTACGCTCAATTCCAACTGCTTAC
TCAGTGAGCTTTTTTAAAATGAAGTGTGCATGTAGAGGTCACATAGTGGA
TATGTTTATATTCCTCCACATATCTCGATGTGCATGAACGCCTCCCTGCC
TTTGTCGCTTGACTGGAGTATTGGTTTCTAATCCCTTCCAGACTGAGACC
AATTTGCTTTTGTGCCCAAGTCATACCTTTAACATCCACACCTTAACATC
CACACCCCTCCTGTCCTACTGTGACCCATCAATTAAATTTTTACTTTCGC
ATGAAGATACGTTTTTGCACAAGCGACCCATGCCTACTGTGGTTGCGTCA
TTGCTGGCCCGGAGGGGTTCTTTGATGGTTGGTGGGGATCGAGGTGAGAC
TGAGATTGCTGTGCCAGGAACTGGTTCAAGCAATGCAAACCACAGGATTG
GTGGTGACAGCTGGGGTCCAATGTCGATGCAGCTCCAGTGGCGTCCAGTG
CCTTCAGCAGGTACCCTTGGTCCCTAGACTGACTTTATGGTTTGAGGTTA
GGGTTTGTTGGGAGTTCTGTGTTTGCACATATATAGTCATTGTACTTTTT
TGTGTTCATGTACACATGCTTCATGTACACATGCATGTGTACGTGTGACA
GAGCACAGCCCCGCAGATGCTGATGTGTCTTGATTGTGATGTATCAGTAC
GTTTTTGACATTGCATGAAAGTAGAGGATGACGCCAAAGGGGATAGATAT
TTTCCCCTCACCATTTCCGACATGAAAACTGCAGCATTAAGTAGAATTTT
GATTTCCTCCCCCCCCCCCCTCTTTTGTCTCCTATCACATGGGCTGTGAT
AGTGATGGTACACTCCTTCATCTCTGGGCCTTATGTTGCCCATAAGTACT
GACTCTACGCGCTGCAGATATGTCGAGAAATATGGAAGTACTCACATACG
TTGATGAATTTGGACTTTACTTCTCACTTTAGTGAGAGGCCTGCTCGCAT
AGGATTTCTTAGTTTGCAGGATGCGAATGTGACATTTTTTTTAGTGCTAT
TACTCTGATCCTCCTTGATAGAATAAGAAAGTTTATCTATCTCCATAGTA
AGATATAATAAATCCCCCCCCCCCAAATAGCATTTATCTCTTGCATCACA
AATCTCTTCCAGAATTGAGACATGGCCTAGCACTAAATTTATGTCAAGTA
ATTGCTTATCCTTTCCCTCTTTCCCGCCTTCTCCCCCCTCTCCATTCCCT
TTGTACTCCAGGTGTTAATCAGCAAACACAACATGAGAAGAGAGATCAAT
GGGGAGTTGTAACTAGTGGAGAGATCAATGGAG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig1108:5338..8070+

>mRNA_C-tenellus_contig1108.2.1 ID=mRNA_C-tenellus_contig1108.2.1|Name=mRNA_C-tenellus_contig1108.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=345bp|location=Sequence derived from alignment at C-tenellus_contig1108:5338..8070+ (Choristocarpus tenellus KU2346)
CCTGGATATGTTGATGGGCTAACGTTGGGCGAAAAGCACGCTCACTTGCA
ACAGGGTATGGTGATGCAAGATACGTTTTTGCACAAGCGACCCATGCCTA
CTGTGGTTGCGTCATTGCTGGCCCGGAGGGGTTCTTTGATGGTTGGTGGG
GATCGAGGTGAGACTGAGATTGCTGTGCCAGGAACTGGTTCAAGCAATGC
AAACCACAGGATTGGTGGTGACAGCTGGGGTCCAATGTCGATGCAGCTCC
AGTGGCGTCCAGTGCCTTCAGCAGGTGTTAATCAGCAAACACAACATGAG
AAGAGAGATCAATGGGGAGTTGTAACTAGTGGAGAGATCAATGGA
back to top