mRNA_C-tenellus_contig1108.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1108.1.1
Unique NamemRNA_C-tenellus_contig1108.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1108.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1108contigC-tenellus_contig1108:4627..5253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size307
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789161.8449695-UTR-C-tenellus_contig1108:4626..47661680789161.8449695-UTR-C-tenellus_contig1108:4626..4766Choristocarpus tenellus KU2346UTRC-tenellus_contig1108 4627..4766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789161.855118-CDS-C-tenellus_contig1108:4766..48601680789161.855118-CDS-C-tenellus_contig1108:4766..4860Choristocarpus tenellus KU2346CDSC-tenellus_contig1108 4767..4860 +
1680789161.864717-CDS-C-tenellus_contig1108:5182..52531680789161.864717-CDS-C-tenellus_contig1108:5182..5253Choristocarpus tenellus KU2346CDSC-tenellus_contig1108 5183..5253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1108.1.1prot_C-tenellus_contig1108.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1108 4767..5253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1108.1.1

>prot_C-tenellus_contig1108.1.1 ID=prot_C-tenellus_contig1108.1.1|Name=mRNA_C-tenellus_contig1108.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=55bp
MAHTDYFGLRQRPATPTTDFSFTVGGSDMLRECSQASGARPVSQHPPFHS
LEYRG
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mRNA from alignment at C-tenellus_contig1108:4627..5253+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1108.1.1 ID=mRNA_C-tenellus_contig1108.1.1|Name=mRNA_C-tenellus_contig1108.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=627bp|location=Sequence derived from alignment at C-tenellus_contig1108:4627..5253+ (Choristocarpus tenellus KU2346)
GAGATGGAGAGATAACAGACACATGAAAGACTTCAGGTACAATCAACCAT
TACTATAAACGTCTGTCCTAGTCTGGACAGACGCACGAGAGAGTGTCAAG
GACAGGATTGTCATTGTGTGACCCTTTACCTGTTGGGTGAATGGCGCATA
CGGATTATTTTGGTCTTCGCCAAAGACCTGCCACACCAACAACGGATTTT
AGTTTTACGGTCGGAGGCTCTGATATGTTACGAGGCAAGAGAGAGTATTT
ACCCTCCTTAGTCACATCAACCCATCGATTTCCCTACATTCAAGAGATAG
TGAGATAATGGGACTGGAATCTAAAGGAAGAAGTCGTACTAGGTTGGTTG
CATTACCCTCCACTCGATCAACTCAAATACCATACCTTTTTTTTTGTGGA
CATACATCCTTTAGTTTTTCTCTATTACTTCCTATCTTTCTTACCATCCC
AATGTCTTTTACCCGCGACTAGTCAACAAGATAGGAGCTGATTGCGGTAA
AATTGTCAAAAAAATCTTCGCTCACGTTTCCGTTGTATCCCCTTTGTTGG
TTGCAGAGTGTTCCCAGGCCTCTGGGGCTAGACCTGTTTCGCAACACCCT
CCCTTCCATTCCCTTGAATATCGTGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig1108:4627..5253+

>mRNA_C-tenellus_contig1108.1.1 ID=mRNA_C-tenellus_contig1108.1.1|Name=mRNA_C-tenellus_contig1108.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=165bp|location=Sequence derived from alignment at C-tenellus_contig1108:4627..5253+ (Choristocarpus tenellus KU2346)
ATGGCGCATACGGATTATTTTGGTCTTCGCCAAAGACCTGCCACACCAAC
AACGGATTTTAGTTTTACGGTCGGAGGCTCTGATATGTTACGAGAGTGTT
CCCAGGCCTCTGGGGCTAGACCTGTTTCGCAACACCCTCCCTTCCATTCC
CTTGAATATCGTGGG
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