mRNA_C-tenellus_contig11076.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11076.2.1
Unique NamemRNA_C-tenellus_contig11076.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11076.2.1 vs. uniprot
Match: D8LFI0_ECTSI (Oxidoreductase, short chain dehydrogenase/reductase family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI0_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 5.140e-50
Identity = 80/115 (69.57%), Postives = 95/115 (82.61%), Query Frame = 1 
Query:   13 LKGKVAVVTGASRGIGKGIALALGEEGCIVYLTGRSSGGRTTDEELGGTVEQTVEDIRAAGGHGVAVLCDHADDTQA-TLFERVESEQGRLDLLVNNAFCLGPGEQLTVKFWEQG 354
            L+GKVAVVTG+SRGIGKGIA+ LG+ GC VY+TGRS GG TTD+E+GG++E+T  +I AAGG G+ V CDHA D Q   LFE+VESEQGRLD+LVNNAF LGPG+QL  KFW QG
Sbjct:   17 LRGKVAVVTGSSRGIGKGIAVTLGQRGCTVYVTGRSVGGNTTDKEIGGSLEETAAEIEAAGGKGIPVACDHAKDEQVKALFEKVESEQGRLDILVNNAFALGPGDQLQAKFWTQG 131
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BLAST of mRNA_C-tenellus_contig11076.2.1 vs. uniprot
Match: D8LFH4_ECTSI (Short-chain dehydrogenase/reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFH4_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 7.350e-48
Identity = 81/115 (70.43%), Postives = 95/115 (82.61%), Query Frame = 1 
Query:   13 LKGKVAVVTGASRGIGKGIALALGEEGCIVYLTGRSSGGRTTDEELGGTVEQTVEDIRAAGGHGVAVLCDHADDTQA-TLFERVESEQGRLDLLVNNAFCLGPGEQLTVKFWEQG 354
            L+GKVAVVTG+SRGIGKGIA+ LG+ GC VY+TGRS GG TTD+E+GG++E+T  +I AAGG G+ V CDHA D Q   LFERVESEQGRLD+LVNNAF LGPG+QL  KFW QG
Sbjct:   87 LRGKVAVVTGSSRGIGKGIAVTLGQRGCTVYVTGRSVGGNTTDKEIGGSLEETAAEIEAAGGKGIPVACDHAKDEQVKALFERVESEQGRLDILVNNAFALGPGDQLQAKFWTQG 201
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BLAST of mRNA_C-tenellus_contig11076.2.1 vs. uniprot
Match: UPI00123C746A (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Pseudomonas saliphila TaxID=2586906 RepID=UPI00123C746A)

HSP 1 Score: 125 bits (313), Expect = 9.160e-33
Identity = 67/120 (55.83%), Postives = 84/120 (70.00%), Query Frame = 1 
Query:    7 GSLKGKVAVVTGASRGIGKGIALALGEEGCIVYLTGRSSGG----RTTDEELGGTVEQTVEDIRAAGGHGVAVLCDHADDTQAT-LFERVESEQGRLDLLVNNAFCLGPGEQLTVKFWEQ 351
            GS +G +AVVTGASRG+G+GIA+ALG  G  VYL+GR+ GG    +   ++LGG +E+T E +RAAGG  VAV CDHADD Q + LFER+ +EQGRLDLLVNNA  L         FW +
Sbjct:    2 GSAEGGIAVVTGASRGVGRGIAVALGAAGMTVYLSGRTLGGLGQEKVNGQQLGGNLEETAEQVRAAGGRAVAVSCDHADDAQVSDLFERIRAEQGRLDLLVNNATFLHESLVSPGPFWNK 121
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BLAST of mRNA_C-tenellus_contig11076.2.1 vs. uniprot
Match: D3CT34_9ACTN (Short-chain dehydrogenase/reductase SDR n=4 Tax=Frankia TaxID=1854 RepID=D3CT34_9ACTN)

HSP 1 Score: 124 bits (311), Expect = 1.600e-32
Identity = 72/116 (62.07%), Postives = 81/116 (69.83%), Query Frame = 1 
Query:    7 GSLKGKVAVVTGASRGIGKGIALALGEEGCIVYLTGRSSGGRTTDEELGGTVEQTVEDIRAAGGHGVAVLCDHADDTQ-ATLFERVESEQGRLDLLVNNAFCLGPGEQLTVKFWEQ 351
            GSL GKVAVVTGASRGIGKGIALALG+EG  VY+TGRS   +     L GTV +T  ++   GG G+AV  DHADD Q A LFE+VE EQGRLDLLVNNAF L         FWE+
Sbjct:    2 GSLAGKVAVVTGASRGIGKGIALALGDEGATVYVTGRSV--QPGSHPLPGTVGETAAEVDRRGGRGIAVQVDHADDEQVAALFEQVEREQGRLDLLVNNAFSLPEDLTEPRPFWEK 115
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BLAST of mRNA_C-tenellus_contig11076.2.1 vs. uniprot
Match: A0A1Y1YH55_9FUNG (Short-chain dehydrogenase/reductase sdr n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YH55_9FUNG)

HSP 1 Score: 123 bits (309), Expect = 2.590e-32
Identity = 67/117 (57.26%), Postives = 81/117 (69.23%), Query Frame = 1 
Query:    1 MSGSLKGKVAVVTGASRGIGKGIALALGEEGCIVYLTGRSSGGRTTDEELGGTVEQTVEDIRAAGGHGVAVLCDHADDTQA-TLFERVESEQGRLDLLVNNAFCLGPGEQLTVKFWE 348
            MS SL G VA+VTGASRG GKGIAL LGE GC VY+TGRSS   TT +    TVEQT E + A GG G+AV+CDH DD Q   +F+++ ++ G+LDLLVNNA+     E  T  FWE
Sbjct:    1 MSKSLAGVVALVTGASRGAGKGIALCLGEAGCTVYVTGRSSSTGTTTQGRAETVEQTAERVTALGGKGIAVICDHGDDGQVKAVFDKIAADYGKLDLLVNNAWGGYETEVKTSPFWE 117
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BLAST of mRNA_C-tenellus_contig11076.2.1 vs. uniprot
Match: N1MR36_9SPHN (3-oxoacyl-[acyl-carrier protein] reductase n=8 Tax=Sphingomonadales TaxID=204457 RepID=N1MR36_9SPHN)

HSP 1 Score: 123 bits (309), Expect = 3.610e-32
Identity = 69/116 (59.48%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:    7 GSLKGKVAVVTGASRGIGKGIALALGEEGCIVYLTGRSSGGRTTDEELGGTVEQTVEDIRAAGGHGVAVLCDHADDTQ-ATLFERVESEQGRLDLLVNNAFCLGPGEQLTVKFWEQ 351
            G L GKVAVVTGASRGIGKGIALAL ++G  VY+TGRS   R +D  L GTV +T     A GG G+AV  DH DD Q A LF+RV  EQGRLD+LVNNAF L       + FWE+
Sbjct:    2 GQLTGKVAVVTGASRGIGKGIALALADQGATVYVTGRSV--RPSDHALPGTVGETAAQCDARGGRGIAVAVDHGDDAQVAALFDRVAGEQGRLDILVNNAFALPEDLTTPLPFWEK 115
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BLAST of mRNA_C-tenellus_contig11076.2.1 vs. uniprot
Match: A0A4R6JNH3_9ACTN (Short subunit dehydrogenase n=1 Tax=Actinoplanes brasiliensis TaxID=52695 RepID=A0A4R6JNH3_9ACTN)

HSP 1 Score: 120 bits (302), Expect = 3.740e-32
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 1 
Query:   22 KVAVVTGASRGIGKGIALALGEEGCIVYLTGRSSGGRTTDEELGGTVEQTVEDIRAAGGHGVAVLCDHADDTQ-ATLFERVESEQGRLDLLVNN------AFCLGPGEQLTVKFWEQ 351
            +VAVVTGASRG+GKGIALALG  G +VY+TGRS+G R T   +GGTV++T   + AAGG GV V CDH DD Q ATLFERV++E G LDLLVNN      A+       +   FWEQ
Sbjct:    5 RVAVVTGASRGVGKGIALALGAAGYVVYVTGRSTGDRVTFPAVGGTVDETAAAVTAAGGAGVPVPCDHTDDEQTATLFERVQAEHGGLDLLVNNVWGGYAAYHEDRYADMQGPFWEQ 121
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BLAST of mRNA_C-tenellus_contig11076.2.1 vs. uniprot
Match: UPI001A45DA71 (Oxidoreductase n=2 Tax=Actinoplanes rishiriensis TaxID=1050105 RepID=UPI001A45DA71)

HSP 1 Score: 123 bits (308), Expect = 4.870e-32
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:   22 KVAVVTGASRGIGKGIALALGEEGCIVYLTGRSSGGRTTDEELGGTVEQTVEDIRAAGGHGVAVLCDHADDTQ-ATLFERVESEQGRLDLLVNN------AFCLGPGEQLTVKFWEQ 351
            +VAVVTGASRG+GKGIA+ALG  G +VY+TGRS+G R T   +GGTVE+T   +  AGG GVAV+CDH DD Q A LF RV +EQG LDLLVNN      A+     E++   FWEQ
Sbjct:   15 RVAVVTGASRGVGKGIAVALGAAGHVVYVTGRSTGDRVTFPTVGGTVEETARAVTTAGGTGVAVVCDHTDDEQTAALFARVRAEQGGLDLLVNNVWGGYAAYHEDRHEEMQGPFWEQ 131
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BLAST of mRNA_C-tenellus_contig11076.2.1 vs. uniprot
Match: Q7NI29_GLOVI (Glr2355 protein n=1 Tax=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) TaxID=251221 RepID=Q7NI29_GLOVI)

HSP 1 Score: 122 bits (307), Expect = 5.640e-32
Identity = 69/117 (58.97%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:    7 GSLKGKVAVVTGASRGIGKGIALALGEEGCIVYLTGRS-SGGRTTDEELGGTVEQTVEDIRAAGGHGVAVLCDHADDTQ-ATLFERVESEQGRLDLLVNNAFCLGPGEQLTVKFWEQ 351
            G L G+VAVVTGASRG G+GIALALG+ G  VY+TGR+  GG        GT+E T E + A GG G+AV CDH DD Q A LFERV  EQGRLDLLVNNA+    G    V FWE+
Sbjct:    2 GLLSGRVAVVTGASRGAGRGIALALGDTGATVYVTGRTVRGGSLPFIGAPGTIEDTAEGVTARGGRGIAVRCDHTDDIQSAALFERVAHEQGRLDLLVNNAWGGNEGSFAEVPFWEE 118
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BLAST of mRNA_C-tenellus_contig11076.2.1 vs. uniprot
Match: A0A1I5GI83_9SPHN (NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family n=2 Tax=unclassified Sphingomonas TaxID=196159 RepID=A0A1I5GI83_9SPHN)

HSP 1 Score: 122 bits (306), Expect = 9.660e-32
Identity = 72/116 (62.07%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:    7 GSLKGKVAVVTGASRGIGKGIALALGEEGCIVYLTGRSSGGRTTDEELGGTVEQTVEDIRAAGGHGVAVLCDHADDTQ-ATLFERVESEQGRLDLLVNNAFCLGPGEQLTVKFWEQ 351
            G L GKVAVVTGASRGIGKGIALAL EEG  VY+TGRS      D  L GTV QT  +  A GG G+AV  DHADD Q A LFE+V  EQGRLD+LVNNAF L         FWE+
Sbjct:    2 GKLTGKVAVVTGASRGIGKGIALALAEEGATVYVTGRSVA--AGDHALPGTVGQTAAECDARGGRGIAVQVDHADDDQVAALFEQVAREQGRLDILVNNAFALPEDLTEPGTFWEK 115
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11076.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFI0_ECTSI5.140e-5069.57Oxidoreductase, short chain dehydrogenase/reductas... [more]
D8LFH4_ECTSI7.350e-4870.43Short-chain dehydrogenase/reductase n=2 Tax=Ectoca... [more]
UPI00123C746A9.160e-3355.83SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
D3CT34_9ACTN1.600e-3262.07Short-chain dehydrogenase/reductase SDR n=4 Tax=Fr... [more]
A0A1Y1YH55_9FUNG2.590e-3257.26Short-chain dehydrogenase/reductase sdr n=1 Tax=Ba... [more]
N1MR36_9SPHN3.610e-3259.483-oxoacyl-[acyl-carrier protein] reductase n=8 Tax... [more]
A0A4R6JNH3_9ACTN3.740e-3258.12Short subunit dehydrogenase n=1 Tax=Actinoplanes b... [more]
UPI001A45DA714.870e-3258.12Oxidoreductase n=2 Tax=Actinoplanes rishiriensis T... [more]
Q7NI29_GLOVI5.640e-3258.97Glr2355 protein n=1 Tax=Gloeobacter violaceus (str... [more]
A0A1I5GI83_9SPHN9.660e-3262.07NAD(P)-dependent dehydrogenase, short-chain alcoho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11076contigC-tenellus_contig11076:2655..3236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LFH4
Preferred nameDHRS1
PFAMsadh_short,adh_short_C2
Model size354
Max annot lvl2759|Eukaryota
KEGG rclassRC00029,RC00117
KEGG koko:K00059,ko:K08141,ko:K11163,ko:K13237
KEGG TC2.A.1.1
KEGG ReactionR04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671
KEGG Pathwayko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,ko04146,map00061,map00333,map00780,map01040,map01100,map01130,map01212,map04146
KEGG ModuleM00083,M00572
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0006082,GO:0006091,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0012505,GO:0015980,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0055114,GO:0071704
Exons3
Evalue1.2e-48
EggNOG OGsCOG1028@1|root,KOG0725@2759|Eukaryota
EC1.1.1.100,1.3.1.34
Descriptionoxidation-reduction process
Cds size354
COG categoryIQ
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789161.5917397-CDS-C-tenellus_contig11076:2654..27981680789161.5917397-CDS-C-tenellus_contig11076:2654..2798Choristocarpus tenellus KU2346CDSC-tenellus_contig11076 2655..2798 +
1680789161.6090097-CDS-C-tenellus_contig11076:2904..30041680789161.6090097-CDS-C-tenellus_contig11076:2904..3004Choristocarpus tenellus KU2346CDSC-tenellus_contig11076 2905..3004 +
1680789161.618456-CDS-C-tenellus_contig11076:3126..32361680789161.618456-CDS-C-tenellus_contig11076:3126..3236Choristocarpus tenellus KU2346CDSC-tenellus_contig11076 3127..3236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11076.2.1prot_C-tenellus_contig11076.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11076 2655..3236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11076.2.1

>prot_C-tenellus_contig11076.2.1 ID=prot_C-tenellus_contig11076.2.1|Name=mRNA_C-tenellus_contig11076.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=118bp
MSGSLKGKVAVVTGASRGIGKGIALALGEEGCIVYLTGRSSGGRTTDEEL
GGTVEQTVEDIRAAGGHGVAVLCDHADDTQATLFERVESEQGRLDLLVNN
AFCLGPGEQLTVKFWEQG
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mRNA from alignment at C-tenellus_contig11076:2655..3236+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11076.2.1 ID=mRNA_C-tenellus_contig11076.2.1|Name=mRNA_C-tenellus_contig11076.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=582bp|location=Sequence derived from alignment at C-tenellus_contig11076:2655..3236+ (Choristocarpus tenellus KU2346)
ATGAGTGGATCCTTGAAAGGAAAAGTAGCAGTTGTTACTGGAGCCTCGAG
AGGAATAGGGAAAGGAATAGCTCTAGCTCTCGGAGAGGAGGGATGTATAG
TGTATTTGACGGGACGCTCTTCAGGAGGACGAACTACAGATGAGGTGAAT
GGATCATTACACGAAGTATTGTTGTGCAGAGTCACAACTGGGCTGCTTTT
ATGTATAAAGTATGGATCTCTGGCAACCTCCTTGCCTCCATTACATGCAG
GAGCTTGGGGGAACAGTGGAGCAGACAGTGGAAGATATTCGAGCTGCTGG
TGGCCACGGCGTGGCGGTACTTTGTGACCACGCCGACGACACCCAGGCAA
GTCACTCGAACTAGAAAGGTGAAGTACATTAGCCTGGGTTTCCTTTCTAT
CTAGGTTACTTTTCACTCTTAACTTGTTACGATGCACTCATCCTCCCCAG
ACCTTCGCAATATAGGTCGAAGCTCTCTTTGAGCGTGTCGAGTCTGAGCA
GGGGCGCCTAGACTTGCTCGTAAACAATGCCTTCTGCTTAGGCCCAGGCG
AGCAGCTAACAGTCAAGTTCTGGGAGCAGGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig11076:2655..3236+

>mRNA_C-tenellus_contig11076.2.1 ID=mRNA_C-tenellus_contig11076.2.1|Name=mRNA_C-tenellus_contig11076.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=354bp|location=Sequence derived from alignment at C-tenellus_contig11076:2655..3236+ (Choristocarpus tenellus KU2346)
ATGAGTGGATCCTTGAAAGGAAAAGTAGCAGTTGTTACTGGAGCCTCGAG
AGGAATAGGGAAAGGAATAGCTCTAGCTCTCGGAGAGGAGGGATGTATAG
TGTATTTGACGGGACGCTCTTCAGGAGGACGAACTACAGATGAGGAGCTT
GGGGGAACAGTGGAGCAGACAGTGGAAGATATTCGAGCTGCTGGTGGCCA
CGGCGTGGCGGTACTTTGTGACCACGCCGACGACACCCAGGCAACTCTCT
TTGAGCGTGTCGAGTCTGAGCAGGGGCGCCTAGACTTGCTCGTAAACAAT
GCCTTCTGCTTAGGCCCAGGCGAGCAGCTAACAGTCAAGTTCTGGGAGCA
GGGG
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