mRNA_C-tenellus_contig11075.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11075.1.1
Unique NamemRNA_C-tenellus_contig11075.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11075.1.1 vs. uniprot
Match: A0A482RP58_9ARCH (26S protease regulatory subunit n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RP58_9ARCH)

HSP 1 Score: 85.5 bits (210), Expect = 1.040e-20
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 APITKRGDIDYESIVKLADGFNGADLRNVGTEAGLFAIRADRDYVLE 141
            A ITKRGDIDYES+ KLA+GFNGADLRN+ TEAGLFAIR DRDYVLE
Sbjct:   18 AKITKRGDIDYESVAKLAEGFNGADLRNICTEAGLFAIREDRDYVLE 64
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BLAST of mRNA_C-tenellus_contig11075.1.1 vs. uniprot
Match: A0A7S2V015_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V015_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.110e-20
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 APITKRGDIDYESIVKLADGFNGADLRNVGTEAGLFAIRADRDYVLE 141
            APITKRGDIDYES+VKLADGFNGADLRNV TEAGLFAIR DRDYVLE
Sbjct:  321 APITKRGDIDYESVVKLADGFNGADLRNVCTEAGLFAIRNDRDYVLE 367
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BLAST of mRNA_C-tenellus_contig11075.1.1 vs. uniprot
Match: A0A812UMP2_SYMMI (RPT4A protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UMP2_SYMMI)

HSP 1 Score: 89.4 bits (220), Expect = 1.330e-20
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 APITKRGDIDYESIVKLADGFNGADLRNVGTEAGLFAIRADRDYVLE 141
            A ITKRGDIDY+S+VKLADGFNGADLRN+ TEAGLFAIRADRDYVLE
Sbjct:  176 ASITKRGDIDYDSVVKLADGFNGADLRNICTEAGLFAIRADRDYVLE 222
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BLAST of mRNA_C-tenellus_contig11075.1.1 vs. uniprot
Match: D7G9F8_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9F8_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.560e-20
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 APITKRGDIDYESIVKLADGFNGADLRNVGTEAGLFAIRADRDYVLE 141
            A ITKRG+ID+ES+VKLADGFNGADLRNVGTEAGLFAIRADRDYVLE
Sbjct:  323 ASITKRGEIDFESVVKLADGFNGADLRNVGTEAGLFAIRADRDYVLE 369
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BLAST of mRNA_C-tenellus_contig11075.1.1 vs. uniprot
Match: A0A7S3H6N5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6N5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.580e-20
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    7 ITKRGDIDYESIVKLADGFNGADLRNVGTEAGLFAIRADRDYVLE 141
            ITKRG+IDYES+VKLADGFNGADLRN+ TEAGLFAIR DRDYVLE
Sbjct:   80 ITKRGEIDYESVVKLADGFNGADLRNICTEAGLFAIREDRDYVLE 124
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BLAST of mRNA_C-tenellus_contig11075.1.1 vs. uniprot
Match: A0A835YGY4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGY4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 5.840e-20
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 APITKRGDIDYESIVKLADGFNGADLRNVGTEAGLFAIRADRDYVLE 141
            APITKRGDIDYESIVKLAD FNGADLRNV TEAGLFAIRA+RDYVLE
Sbjct:  326 APITKRGDIDYESIVKLADEFNGADLRNVCTEAGLFAIRAERDYVLE 372
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BLAST of mRNA_C-tenellus_contig11075.1.1 vs. uniprot
Match: A0A7S0LA79_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LA79_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 6.180e-20
Identity = 38/47 (80.85%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 APITKRGDIDYESIVKLADGFNGADLRNVGTEAGLFAIRADRDYVLE 141
            APITK+G+IDYES++KLADGFN ADLRNV TEAG+FAIRA+RDYV+E
Sbjct:   86 APITKKGEIDYESVIKLADGFNAADLRNVCTEAGMFAIRAERDYVIE 132
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BLAST of mRNA_C-tenellus_contig11075.1.1 vs. uniprot
Match: A0A7S1H3U4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H3U4_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 7.930e-20
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    7 ITKRGDIDYESIVKLADGFNGADLRNVGTEAGLFAIRADRDYVLE 141
            ITKRGDIDYES+VKLADG NGAD+RN+ TEAGLFAIR+DRDYVLE
Sbjct:  109 ITKRGDIDYESVVKLADGLNGADMRNICTEAGLFAIRSDRDYVLE 153
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BLAST of mRNA_C-tenellus_contig11075.1.1 vs. uniprot
Match: F0YJ94_AURAN (AAA domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJ94_AURAN)

HSP 1 Score: 89.0 bits (219), Expect = 1.200e-19
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    4 PITKRGDIDYESIVKLADGFNGADLRNVGTEAGLFAIRADRDYVLE 141
            PITKRG+IDYES+ KLADGFNGADLRNV TEAGLFAIRADRDYVLE
Sbjct:  339 PITKRGEIDYESVCKLADGFNGADLRNVCTEAGLFAIRADRDYVLE 384
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BLAST of mRNA_C-tenellus_contig11075.1.1 vs. uniprot
Match: A0A7S1B6Y1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B6Y1_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.150e-19
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    7 ITKRGDIDYESIVKLADGFNGADLRNVGTEAGLFAIRADRDYVLE 141
            ITKRGDIDYES+VKLADG NGADLRNV TEAGLFAIRADRDYVLE
Sbjct:  331 ITKRGDIDYESVVKLADGLNGADLRNVCTEAGLFAIRADRDYVLE 375
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11075.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482RP58_9ARCH1.040e-2085.1126S protease regulatory subunit n=1 Tax=archaeon T... [more]
A0A7S2V015_9STRA1.110e-2093.62Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A812UMP2_SYMMI1.330e-2089.36RPT4A protein n=1 Tax=Symbiodinium microadriaticum... [more]
D7G9F8_ECTSI1.560e-2091.49AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S3H6N5_9STRA3.580e-2088.89Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A835YGY4_9STRA5.840e-2093.62P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S0LA79_9EUKA6.180e-2080.85Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S1H3U4_9STRA7.930e-2086.67Hypothetical protein (Fragment) n=1 Tax=Thalassion... [more]
F0YJ94_AURAN1.200e-1991.30AAA domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S1B6Y1_9STRA4.150e-1993.33Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11075contigC-tenellus_contig11075:20..806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G9F8
Preferred nameRPT4
PFAMsAAA
Model size141
Max annot lvl2759|Eukaryota
KEGG koko:K03064
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0000502,GO:0000731,GO:0001672,GO:0002020,GO:0002082,GO:0003674,GO:0003824,GO:0004175,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0005829,GO:0005838,GO:0006139,GO:0006140,GO:0006163,GO:0006259,GO:0006281,GO:0006289,GO:0006301,GO:0006302,GO:0006355,GO:0006357,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006515,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006914,GO:0006919,GO:0006950,GO:0006974,GO:0007034,GO:0007041,GO:0007088,GO:0007346,GO:0008047,GO:0008104,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008333,GO:0008540,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009109,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0010847,GO:0010918,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0010965,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016504,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017025,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0018193,GO:0018196,GO:0018279,GO:0019058,GO:0019079,GO:0019219,GO:0019220,GO:0019222,GO:0019362,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019899,GO:0019902,GO:0019903,GO:0019904,GO:0019941,GO:0019985,GO:0022411,GO:0022607,GO:0022624,GO:0023051,GO:0023056,GO:0030071,GO:0030111,GO:0030162,GO:0030163,GO:0030177,GO:0030234,GO:0030433,GO:0030554,GO:0030808,GO:0030810,GO:0030970,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031399,GO:0031401,GO:0031445,GO:0031593,GO:0031595,GO:0031597,GO:0031625,GO:0031935,GO:0031936,GO:0031938,GO:0031939,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032509,GO:0032510,GO:0032527,GO:0032553,GO:0032555,GO:0032559,GO:0032784,GO:0032786,GO:0032968,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033554,GO:0034098,GO:0034214,GO:0034243,GO:0034404,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034976,GO:0035639,GO:0035800,GO:0035861,GO:0035966,GO:0035967,GO:0036094,GO:0036211,GO:0036402,GO:0036435,GO:0036503,GO:0036513,GO:0040029,GO:0042175,GO:0042176,GO:0042221,GO:0042287,GO:0042288,GO:0042325,GO:0042327,GO:0042391,GO:0042623,GO:0042726,GO:0042728,GO:0042802,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043248,GO:0043254,GO:0043280,GO:0043281,GO:0043412,GO:0043413,GO:0043457,GO:0043467,GO:0043531,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044389,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045732,GO:0045787,GO:0045815,GO:0045838,GO:0045840,GO:0045842,GO:0045862,GO:0045893,GO:0045898,GO:0045899,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0045981,GO:0046034,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046907,GO:0048193,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051336,GO:0051345,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051788,GO:0051881,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0055086,GO:0060255,GO:0060260,GO:0060261,GO:0060828,GO:0060968,GO:0060969,GO:0061134,GO:0061136,GO:0061857,GO:0061919,GO:0062012,GO:0062013,GO:0062033,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070085,GO:0070647,GO:0070682,GO:0070727,GO:0070841,GO:0070842,GO:0070887,GO:0071218,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0071712,GO:0071840,GO:0071897,GO:0071985,GO:0072387,GO:0072389,GO:0072521,GO:0072524,GO:0080090,GO:0090068,GO:0090085,GO:0090263,GO:0090304,GO:0090734,GO:0097159,GO:0097352,GO:0097367,GO:0098772,GO:0098796,GO:0098827,GO:0140030,GO:0140096,GO:1900371,GO:1900373,GO:1900542,GO:1900544,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902275,GO:1902494,GO:1902680,GO:1902801,GO:1903003,GO:1903004,GO:1903006,GO:1903007,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1903513,GO:1903578,GO:1903580,GO:1903715,GO:1903862,GO:1904288,GO:1904949,GO:1905268,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990381,GO:1990730,GO:2000058,GO:2000060,GO:2000112,GO:2000116,GO:2000142,GO:2000144,GO:2000152,GO:2000158,GO:2001056,GO:2001141,GO:2001169,GO:2001171,GO:2001251,GO:2001252
Exons2
Evalue2.55e-21
EggNOG OGsCOG1222@1|root,KOG0651@2759|Eukaryota
Descriptionproteasome-activating ATPase activity
Cds size141
COG categoryO
BRITEko00000,ko00001,ko00002,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789161.5448227-CDS-C-tenellus_contig11075:19..1121680789161.5448227-CDS-C-tenellus_contig11075:19..112Choristocarpus tenellus KU2346CDSC-tenellus_contig11075 20..112 -
1680789161.55605-CDS-C-tenellus_contig11075:758..8061680789161.55605-CDS-C-tenellus_contig11075:758..806Choristocarpus tenellus KU2346CDSC-tenellus_contig11075 759..806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11075.1.1prot_C-tenellus_contig11075.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11075 20..806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11075.1.1

>prot_C-tenellus_contig11075.1.1 ID=prot_C-tenellus_contig11075.1.1|Name=mRNA_C-tenellus_contig11075.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=47bp
APITKRGDIDYESIVKLADGFNGADLRNVGTEAGLFAIRADRDYVLE
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mRNA from alignment at C-tenellus_contig11075:20..806-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11075.1.1 ID=mRNA_C-tenellus_contig11075.1.1|Name=mRNA_C-tenellus_contig11075.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=787bp|location=Sequence derived from alignment at C-tenellus_contig11075:20..806- (Choristocarpus tenellus KU2346)
GCTCCCATTACCAAGAGGGGTGACATTGATTATGAGTCCATTGTCAAGGT
GTGTGTCTATGTGTGTGTGTGTTTTTTTGTTTTTTTTCTGGTGAGATTGT
TCTGAGATGGCATTTACAATGGGATTGTGGTTTATTTTTGGCAGTATGGT
GTTGGCTACGGAATAAACCATTGATGTCTTGTCTTGAAATGGTTTTTCTA
CTGGTGTGGATTTATTTTTTGTTGTTACATCATACCGCTCTGCTGAGTGA
TGATTGGTAGAAATGGTTTTGATTGTTGTATTATAGGCCTGATCCAGCTG
ACAAGGTATTGTTGTGGTTTTCGTGGAAATTAAAGCAGGAGGAAAGTGAA
GAACGTTTGGAATGCCAAAATTTTGTAATTAGAAATTTTTTTAGAGTTGT
TGGAATGATTTATAGTACTACGTTGTTAAAAGAGAGATGCGATATGGTAC
TGTGATGGTGAGGAGAAGGAATGATTTGATTGTCGATCTCGATCAAAATG
AAACTGTGATTTTCCACTTTTAGATAGTACTAGGCCGTAGTAAGAAATGA
AAGATGTTATAGAAATTTGGAGTAATTGTGAACATTGTTAGGGTCAGGGT
TAGTGTTTGTTGGCACCCTGCTGTTACTAATTTCAAATGTTGTTCTGAAC
TGTGTCAATTAAAAATTTTATTCTTGACTTTTTTTTTAATGCAGCTGGCA
GATGGCTTCAATGGGGCTGATCTGCGTAATGTGGGGACGGAGGCGGGTCT
GTTTGCCATACGAGCAGACAGGGACTATGTGCTGGAG
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Coding sequence (CDS) from alignment at C-tenellus_contig11075:20..806-

>mRNA_C-tenellus_contig11075.1.1 ID=mRNA_C-tenellus_contig11075.1.1|Name=mRNA_C-tenellus_contig11075.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=141bp|location=Sequence derived from alignment at C-tenellus_contig11075:20..806- (Choristocarpus tenellus KU2346)
GCTCCCATTACCAAGAGGGGTGACATTGATTATGAGTCCATTGTCAAGCT
GGCAGATGGCTTCAATGGGGCTGATCTGCGTAATGTGGGGACGGAGGCGG
GTCTGTTTGCCATACGAGCAGACAGGGACTATGTGCTGGAG
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