mRNA_C-tenellus_contig11074.1.3 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11074.1.3
Unique NamemRNA_C-tenellus_contig11074.1.3
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11074.1.3 vs. uniprot
Match: A0A6H5JSG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG8_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 5.760e-43
Identity = 113/286 (39.51%), Postives = 133/286 (46.50%), Query Frame = 1 
Query:  223 PLGLLWSDFGGSRECGDADAEETASREFAEESLGLFNGVCLNADSVKLSQVSYVTSVWISYRWRLSPSSFPTLREPLTSTAHRNESLPTELFVLDSTLRAYVTYAFSNFNKTDDTRQCSHSCPYLGTQHHKYSFCIPIVVPTLSLEQHCIPPISRKQAAMEVQLRDPTLRGTRVFKCRNGGYVMFVANVQYVPDMMLQLARKEVVER---------------GLGEG-GDGKGLCEKTDFAWVPASSLLEAMQRARHRSTRGVVVQLGGCRYLRLFHKVSSTALVL 1032
            P+GLLWSDFGG++E GDADAEETASREFAEES G+F+GV L +DSV                                                                                                           +R QA M   LRDP+LRG RVF+CRNGGYVMFVA V +VPD+M+ LARKE+V                 G G+G     G  EKTDFAWVPAS LL AM+ +R+RSTR VVV+LGGCRYLRLFHK S  + V+
Sbjct:  416 PVGLLWSDFGGAKEAGDADAEETASREFAEESFGIFHGVRLESDSV-----------------------------------------------------------------------------------------------------------ARSQATMSSALRDPSLRGKRVFECRNGGYVMFVAEVDFVPDLMINLARKEIVGEDDSGSDAVGVQGEHGGSGQGQASSPGFSEKTDFAWVPASVLLRAMRESRNRSTRKVVVKLGGCRYLRLFHKASRFSFVI 594
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BLAST of mRNA_C-tenellus_contig11074.1.3 vs. uniprot
Match: D8LAV2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV2_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 5.330e-41
Identity = 111/278 (39.93%), Postives = 127/278 (45.68%), Query Frame = 1 
Query:  223 PLGLLWSDFGGSRECGDADAEETASREFAEESLGLFNGVCLNADSVKLSQVSYVTSVWISYRWRLSPSSFPTLREPLTSTAHRNESLPTELFVLDSTLRAYVTYAFSNFNKTDDTRQCSHSCPYLGTQHHKYSFCIPIVVPTLSLEQHCIPPISRKQAAMEVQLRDPTLRGTRVFKCRNGGYVMFVANVQYVPDMMLQLARKEVVER---------------GLGEG-GDGKGLCEKTDFAWVPASSLLEAMQRARHRSTRGVVVQLGGCRYLRLFHK 1008
            P GLLWSDFGG+RE  DADAEETASREFAEES G+F+GV L +DSV                                                                                                           +R QA M   LRDP+LRG RVF+CRNGGYVMFVA V +VPD+M+ LARKE+V                 G G+G     G  EKTDFAWVPAS LL AM+ +R+RSTR VVV+LGGCRYLRLFHK
Sbjct:  418 PAGLLWSDFGGAREASDADAEETASREFAEESFGIFHGVRLESDSV-----------------------------------------------------------------------------------------------------------ARSQATMSSALRDPSLRGKRVFECRNGGYVMFVAEVDFVPDLMINLARKEIVGEDGSGPDAVGVQGECWGSGQGQASSPGFSEKTDFAWVPASVLLRAMRESRNRSTRKVVVKLGGCRYLRLFHK 588
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BLAST of mRNA_C-tenellus_contig11074.1.3 vs. uniprot
Match: A0A7S3XND0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XND0_HETAK)

HSP 1 Score: 77.8 bits (190), Expect = 1.570e-11
Identity = 97/358 (27.09%), Postives = 150/358 (41.90%), Query Frame = 1 
Query:    1 PFCFLGGDLLFLLGQEPRCAFRKKTSSPSPSQGDQPLMKKDPCNSEVVLTVSGKEGSVSEMKDERLQSSIEEGEPLGLLWSDFGGSRECGDADA-EETASREFAEESLGLFNGVCLNADSVKLSQVSYVTSVWISYR-----WRLSPSSFPTLREPLTSTAHRNESLPTELFVLD--STLRAYVTYAFSNFNKTDDT-RQC-------SHSCPYLGTQHHKYS-FCIPIVVPTLSLEQHCIPPI-SRKQAAMEVQLRDPTLRGTRVFKCRNGGYVMFVANVQYVPDM----MLQLARKEVVERGLGEGGDGKGLCEKTDFAWVPASSLLEAMQRARHRSTRGVVVQLGGCRYLRLFHK 1008
            P+CFL GDLLFL+G+E    F  K                                         L + +      GLLWSDFGG +E  D +  E TASREFAEE+ G+F G+  +   V+ S    + ++    +     +++    +     P+T       +L  E +  +  + ++++     S   +++D+ R+C       S S      Q   Y   C    VP    E   +  I S  Q  +     D +    ++ KC        +A+V  VP M    +  L  +E +     +GGD     EK DFAWVPA SL++ ++   +RS R V ++LGGCR  R+FHK
Sbjct:   19 PYCFLAGDLLFLIGKEKFYQFVTKKGC--------------------------------------LDTQMH-----GLLWSDFGGKKEPQDQEIPERTASREFAEETFGMFGGLGGSEKIVQKSAEEMLNTLLDKEKEGKEVFKIINGQYVMFLAPVTFVDDLMLNLAREQWQQEHGNAMQSHPHKEGSLGTQSEDSKRECADRKAARSDSSGNEPKQEDYYEPVCTSGKVPHQPAETSSVNKILSGTQPDLAKAAHDSS-GVNQLLKC--------LADV--VPQMSESKIPSLTHQEELLLQQQKGGDS----EKLDFAWVPAQSLVKTLEENANRSRRKVSLRLGGCRVFRMFHK 318
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BLAST of mRNA_C-tenellus_contig11074.1.3 vs. uniprot
Match: A0A7S3VJL3_DUNTE (Hypothetical protein n=2 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VJL3_DUNTE)

HSP 1 Score: 61.6 bits (148), Expect = 3.940e-6
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:  217 GEPLGLLWSDFGGSRECGDADAEETASREFAEESLGLFNGVCLNADSVKLS 369
            G+   ++WSDFGG RE  DAD+ ETASREFAEE+LG+F GV ++  +VK S
Sbjct:   47 GKMEAIMWSDFGGKREAADADSIETASREFAEETLGVFGGVSVDPAAVKRS 97
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BLAST of mRNA_C-tenellus_contig11074.1.3 vs. uniprot
Match: A0A8J9S0U8_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S0U8_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 8.780e-5
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:  235 LWSDFGGSRECGDADAEETASREFAEESLGLFNGVCLNADSVKLSQV 375
            +W DFGGSRE  D+D ++TASREFAEE+LG+F    +++ SV  SQV
Sbjct:   56 MWKDFGGSREAIDSDVQDTASREFAEETLGMFASQNVDSASVAASQV 102
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11074.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JSG8_9PHAE5.760e-4339.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LAV2_ECTSI5.330e-4139.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XND0_HETAK1.570e-1127.09Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3VJL3_DUNTE3.940e-658.82Hypothetical protein n=2 Tax=Dunaliella tertiolect... [more]
A0A8J9S0U8_9CHLO8.780e-557.45Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11074contigC-tenellus_contig11074:331..2512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3075.A0A087SF01
Model size1802
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000491
EggNOG OGs2EZKH@1|root,2T0WV@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_006290.1
Cds size945
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789161.4757886-UTR-C-tenellus_contig11074:330..10761680789161.4757886-UTR-C-tenellus_contig11074:330..1076Choristocarpus tenellus KU2346UTRC-tenellus_contig11074 331..1076 -
1680789161.5088825-UTR-C-tenellus_contig11074:2401..25121680789161.5088825-UTR-C-tenellus_contig11074:2401..2512Choristocarpus tenellus KU2346UTRC-tenellus_contig11074 2402..2512 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789161.4859738-CDS-C-tenellus_contig11074:1076..12611680789161.4859738-CDS-C-tenellus_contig11074:1076..1261Choristocarpus tenellus KU2346CDSC-tenellus_contig11074 1077..1261 -
1680789161.4951835-CDS-C-tenellus_contig11074:1641..24011680789161.4951835-CDS-C-tenellus_contig11074:1641..2401Choristocarpus tenellus KU2346CDSC-tenellus_contig11074 1642..2401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11074.1.3prot_C-tenellus_contig11074.1.3Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11074 1077..2401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11074.1.3

>prot_C-tenellus_contig11074.1.3 ID=prot_C-tenellus_contig11074.1.3|Name=mRNA_C-tenellus_contig11074.1.3|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=315bp
MKKDPCNSEVVLTVSGKEGSVSEMKDERLQSSIEEGEPLGLLWSDFGGSR
ECGDADAEETASREFAEESLGLFNGVCLNADSVKLSQVSYVTSVWISYRW
RLSPSSFPTLREPLTSTAHRNESLPTELFVLDSTLRAYVTYAFSNFNKTD
DTRQCSHSCPYLGTQHHKYSFCIPIVVPTLSLEQHCIPPISRKQAAMEVQ
LRDPTLRGTRVFKCRNGGYVMFVANVQYVPDMMLQLARKEVVERGLGEGG
DGKGLCEKTDFAWVPASSLLEAMQRARHRSTRGVVVQLGGCRYLRLFHKV
SSTALVLIGIHCTH*
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mRNA from alignment at C-tenellus_contig11074:331..2512-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11074.1.3 ID=mRNA_C-tenellus_contig11074.1.3|Name=mRNA_C-tenellus_contig11074.1.3|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2182bp|location=Sequence derived from alignment at C-tenellus_contig11074:331..2512- (Choristocarpus tenellus KU2346)
CCCTTTTGTTTTTTAGGAGGAGACCTCCTATTTCTTCTTGGCCAGGAGCC
TAGGTGTGCATTCAGGAAAAAAACATCTTCCCCTTCACCGTCTCAGGGCG
ATCAACCCCTCATGAAGAAGGATCCTTGCAATTCAGAAGTGGTCCTCACC
GTTTCTGGGAAGGAAGGTTCAGTCAGTGAAATGAAAGATGAGCGACTTCA
ATCTTCTATAGAAGAAGGCGAGCCCCTAGGTCTTTTGTGGTCTGACTTTG
GTGGCTCCAGAGAATGTGGCGACGCTGATGCCGAGGAAACGGCTAGCAGG
GAGTTTGCTGAGGAAAGTCTTGGATTATTCAATGGTGTGTGCCTAAACGC
TGACAGCGTAAAGTTGAGTCAGGTGAGTTACGTCACTTCCGTTTGGATTA
GCTATCGTTGGCGACTCTCCCCGTCAAGTTTTCCAACCTTACGGGAACCT
TTGACCTCTACCGCTCACAGGAATGAATCGCTTCCAACTGAGTTGTTTGT
GCTGGATTCCACTTTAAGAGCATATGTTACCTATGCTTTCTCAAACTTCA
ATAAGACTGATGACACGCGACAGTGCTCCCACTCCTGCCCTTACCTTGGT
ACACAGCACCACAAATATTCGTTTTGTATTCCCATAGTGGTCCCCACCCT
GTCCCTAGAACAACATTGTATCCCCCCCATCTCCCGTAAGCAGGCTGCGA
TGGAGGTCCAACTTCGTGACCCTACCTTGAGGGGTACTCGTGTGTTCAAG
TGCCGCAATGGGGGATATGTGATGTTTGTGGCAAACGTTCAGTACGTTCC
AGACATGATGCTTCAGCTGGCTCGCAAGGAGGTGGTTGAAAGGGGACTAG
GCGAAGGCGGGGACGGCAAAGGTGGGCAAGCAGGGAACTAATAGTAAAGA
GGCAGGGCGAGAGGCCAAAAGCCACTGTCCTATCTGTGCGTGCTTCGACC
CGAAGGTGAAGGCCAAGAGAAAATGTTAATGAGGTATGTTTTCCCGATTA
GCAATCCCTCCTCCTAGTTTCTGTCTTCACTTACATCATGGACAAATTTT
GAAGAAGTTGAATGTAATTAGATACTTTCTTCGGTCTTTTTTGTATTTTT
CATCTACAGTCTTTCCTCTCCCCCTCCTGTACGTACTCTTCTGTTTCCTT
CCTAGTATTTTTCAATGCACAGGCTTGTACTATAACTCAGTGCTAACCAA
GGTATTACCTGTGGTGCATTTGTGTCACCTGTTATTTCATATGATCCTCA
GGACTATGCGAGAAGACAGATTTTGCCTGGGTTCCTGCCTCCAGCCTTCT
TGAGGCAATGCAACGGGCCAGGCACAGATCCACTCGGGGAGTTGTTGTGC
AGCTTGGAGGTTGCCGATATCTCCGCCTGTTCCACAAAGTTAGTTCTACT
GCACTGGTCTTAATAGGCATACACTGTACCCATTAACTACATGTGTGGGT
ATCTCGAACATAACATTCACACAATGGTATTGCCCATCTGAGCTCAGTAG
CACCCAGTGACAGGTGAATAATGTATTGAGGATCGCATGTGACCCTAACC
CTAAGCCCATTCTGGAGGTGATCGTTTGACTCCTGGTATGCTGTTGCAGA
TTCTTACCTATCCTAAACCACCCAGGTCAAGGAGCAGGGGGGGGTGCATA
CTTTATTGAACTCTCTGTATATGTACACCTTCCTTGATACTGCAAGTGGA
CTGGATTGTAGAGTTGAGTTGGTCCAGACATTGCTGTTGTGATTGCAGAG
GTGCTGTTAACAGACACATCCCCGTGGAAATTGTCAAACACCACTGAATA
TTTTAGGGGGCTTTGGTGTAGTGTTAGAAAATACAGTGGATGCAGGGTGT
ACTTGAGCTAGAGTCAAGCCAAAGATGTGCTCCTAACTAAGGTGCTATAC
ATCACTCTATTGTTTTGTTTTGAACAGTTGTATTTCAAAAACCTGGATCC
CCTGTGGGTGCACCCTTTCTTCTGATAGAAGTTTTCCCTGCCTGACACAC
TGCTGGCTCATCTCATTCACCTCTGTACCCTCCAAACTCACACCCCTCCG
TTCCCTATTTTGGTTCCTCTTCTTTTGTATTTTTTTACCAAATCACAGTT
TGTAATCTCCCTGTGGGATCTAAACCTACCCAATGTAGTAGCGACAGTTT
TGAAACCATTCGTGAGCTCTGCCTGCCAAGGT
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Coding sequence (CDS) from alignment at C-tenellus_contig11074:331..2512-

>mRNA_C-tenellus_contig11074.1.3 ID=mRNA_C-tenellus_contig11074.1.3|Name=mRNA_C-tenellus_contig11074.1.3|organism=Choristocarpus tenellus KU2346|type=CDS|length=945bp|location=Sequence derived from alignment at C-tenellus_contig11074:331..2512- (Choristocarpus tenellus KU2346)
ATGAAGAAGGATCCTTGCAATTCAGAAGTGGTCCTCACCGTTTCTGGGAA
GGAAGGTTCAGTCAGTGAAATGAAAGATGAGCGACTTCAATCTTCTATAG
AAGAAGGCGAGCCCCTAGGTCTTTTGTGGTCTGACTTTGGTGGCTCCAGA
GAATGTGGCGACGCTGATGCCGAGGAAACGGCTAGCAGGGAGTTTGCTGA
GGAAAGTCTTGGATTATTCAATGGTGTGTGCCTAAACGCTGACAGCGTAA
AGTTGAGTCAGGTGAGTTACGTCACTTCCGTTTGGATTAGCTATCGTTGG
CGACTCTCCCCGTCAAGTTTTCCAACCTTACGGGAACCTTTGACCTCTAC
CGCTCACAGGAATGAATCGCTTCCAACTGAGTTGTTTGTGCTGGATTCCA
CTTTAAGAGCATATGTTACCTATGCTTTCTCAAACTTCAATAAGACTGAT
GACACGCGACAGTGCTCCCACTCCTGCCCTTACCTTGGTACACAGCACCA
CAAATATTCGTTTTGTATTCCCATAGTGGTCCCCACCCTGTCCCTAGAAC
AACATTGTATCCCCCCCATCTCCCGTAAGCAGGCTGCGATGGAGGTCCAA
CTTCGTGACCCTACCTTGAGGGGTACTCGTGTGTTCAAGTGCCGCAATGG
GGGATATGTGATGTTTGTGGCAAACGTTCAGTACGTTCCAGACATGATGC
TTCAGCTGGCTCGCAAGGAGGTGGTTGAAAGGGGACTAGGCGAAGGCGGG
GACGGCAAAGGACTATGCGAGAAGACAGATTTTGCCTGGGTTCCTGCCTC
CAGCCTTCTTGAGGCAATGCAACGGGCCAGGCACAGATCCACTCGGGGAG
TTGTTGTGCAGCTTGGAGGTTGCCGATATCTCCGCCTGTTCCACAAAGTT
AGTTCTACTGCACTGGTCTTAATAGGCATACACTGTACCCATTAA
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