mRNA_C-tenellus_contig11071.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11071.1.1
Unique NamemRNA_C-tenellus_contig11071.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11071.1.1 vs. uniprot
Match: D8LMX5_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX5_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 1.360e-69
Identity = 160/277 (57.76%), Postives = 190/277 (68.59%), Query Frame = 1
Query:   22 VSKRKEEVRLRRKQEEQRRHTAFMACRAGGLDEIKAMLDSGLIRCTERERDSGQSGASLLHACVTEFGGAAEVVSPGTGELAKHRLGV---LLECANPQVDAGVVDTAGLTVLHRVAEALDLPYLGLLLEERKKSQERRNQIQLNEPCLSRGWTPLHYVAAEASTDGVSTLLAAGARVNFQAKPPPGDVSVISKMGLSSSRGGRNXXXXXXXXXXXXXXXXXXXXXXVSKAGATALEVVRALLSQERSGGMRKKMLQEVARQLDAAAQEVERAKELR 843
              KRKE VRL+RK EE+RR   F ACRAG ++E++ ML +GLIRCTERER++G SGASLLH+CVT+F G+ +  +P   ELA  RL +   +L   +P VDAG VD+ GLTVLHRVAEALDLPYL LLLEER+KSQERR+QI L+E CL +GWTPLHY AAE S  GVSTLL AGA V+ +        +V+  +  SSS G   XXXXXXXX                  G TAL++ RALLS+E   G RKK LQEVARQL AA Q VERAKE R
Sbjct:  292 ADKRKEVVRLKRKAEEERRVGLFTACRAGFVEEVRLMLGTGLIRCTERERENGSSGASLLHSCVTDFAGSPDN-APQLKELAIDRLSIAAMILASTDPAVDAGWVDSVGLTVLHRVAEALDLPYLALLLEERQKSQERRDQILLDERCLLKGWTPLHYAAAEGSPVGVSTLLTAGASVSVRG-------AVLDGIEPSSSNGAXXXXXXXXXX------------------GGTALQLARALLSKE-GAGPRKKGLQEVARQLSAATQAVERAKEQR 541          
BLAST of mRNA_C-tenellus_contig11071.1.1 vs. uniprot
Match: A0A6H5K1P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P9_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 1.460e-37
Identity = 127/282 (45.04%), Postives = 156/282 (55.32%), Query Frame = 1
Query:    1 KKDADRAVS-KRKEEVRLRRKQEEQRRHTAFMACRAGGLDEIKAMLDSGLIRCTERERDSGQSGASLLHACVTEFGGAAEVVSPGTGELAKHRLGVLLECANPQVDAGVVDTAGLTVLHRVAEALDLPYLGLLLEERKKSQERRNQIQLNEPCLSRGWTPLHYVAAEASTDGVSTLLAAGARVNFQAKPPPGDVSVISKMGLSSSRGGRNXXXXXXXXXXXXXXXXXXXXXXVSKAGATALEVVRALLSQERSGGMRKKMLQEVARQLDAAAQEVERAKELR 843
            KKD + +V+ KRKE VRL+RK EE+RR   F ACRAG ++E++ ML +GLIRCTERER++G SGASLLH+CVT+F G+ +  +P   ELA  RL +                                   +LL+ER               CL +GWTPLHY AAE S   VSTLLAAGA V+ +        +V+  +  SSS G   XXXXXXXX                  G TAL++ RALLS+E   G RKK LQEVARQL AA Q VERAKE R
Sbjct:  334 KKDEETSVADKRKEVVRLKRKAEEERRVGLFTACRAGFVEEVRLMLGTGLIRCTERERENGTSGASLLHSCVTDFAGSPDN-APQLKELAVDRLSIA---------------------------------AILLDER---------------CLLKGWTPLHYAAAEGSPVCVSTLLAAGASVSVRG-------AVLDGIEPSSSNGAXXXXXXXXXX------------------GGTALQLARALLSKE-GAGPRKKGLQEVARQLSAATQAVERAKEQR 540          
BLAST of mRNA_C-tenellus_contig11071.1.1 vs. uniprot
Match: A0A836CBZ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBZ1_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.610e-35
Identity = 108/269 (40.15%), Postives = 135/269 (50.19%), Query Frame = 1
Query:   88 FMACRAGGLDEIKAMLDSGLIRCT--ERERDSGQSGASLLHACVT-----EFGGAAEVVSPGTGELAKHRLGVLLECANPQVDAGVVDTAGLTVLHRVAEALDLPYLGLLLEERKKSQERR--NQIQLNEPCLSRGWTPLHYVAAEASTDGVSTLLAAGARVNFQAKPPPGDVSVISKMGLSSSRGGRNXXXXXXXXXXXXXXXXXXXXXXVSKAGATALEVVRALLSQERSGGMRKK---MLQEVARQLDAAAQEVERAKELRERKER 858
            F ACR G L+E +A+L  G    T  ERE + G+SG SLLHACVT     + GG         G L   +L +  E +   VD   VD  GLTVLHR AEA D+P L  LL +R +SQ      QI LNE CL+RGWTPLHY A+  ST+GV+ LL  GA V   A PP                                           S  GAT L++V+ L+  +R GG R+K    L EV R L +A +E ERA+E RE++ER
Sbjct:  395 FAACREGALEEARALLQGGAEGATVAEREHEGGKSGPSLLHACVTTEALRKEGGDXXXXXXXAGRLEIAKLLLAWEASAAAVDVACVDEDGLTVLHRAAEACDVPLLRALLADRGESQRPAVTPQILLNERCLARGWTPLHYAASRGSTEGVTVLLGKGAPVGAHAAPPKAP----------------------------------------SDKGATPLDLVKQLV--QRQGGGRRKGGGSLTEVERVLRSALKEAERAREEREQRER 621          
BLAST of mRNA_C-tenellus_contig11071.1.1 vs. uniprot
Match: A0A7S1UAS6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAS6_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 8.420e-16
Identity = 72/219 (32.88%), Postives = 95/219 (43.38%), Query Frame = 1
Query:   55 RKQEEQRRHTAFMACRAGGLDEIKAMLDSGL----------------IRCTERERDSGQSGASLLHACVT---EFGGAAEVVSPGTGEL-----------------AKHRLGVLLECANPQVDAGVVDTAGLTVLHRVAEALDLPYLGLLLE----------------ERKKSQERRNQIQLNEPCLSRGWTPLHYVAAEASTDGVSTLLAAGARVNFQ 555
            R++EE  R   F A RAG +  ++ +LD                   +R +ERER+ G+SGA+LLHACV+      GAA  V P   +                  A+ R          ++D G  D  G TVLHR A A D  +L LLL+                ++KK+      + LN  CLSRGWT LHY  A         LLAAGARV  +
Sbjct:  139 REREEAARAYLFSAARAGDVGLVQKILDPLAATASAASADYADELLSLRPSERERERGKSGATLLHACVSVNLPSAGAANAVLPKAAQXXXXXXVGGSSGKAVNRPAERRKVAAFLLTQEELDVGAYDEDGCTVLHR-ASASDPLFLQLLLKTVLGVQIGDDGEASKTKKKKASAAHAALDLNNKCLSRGWTALHYSVAAGLAGNCRLLLAAGARVRIR 356          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11071.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LMX5_ECTSI1.360e-6957.76Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A6H5K1P9_9PHAE1.460e-3745.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CBZ1_9STRA2.610e-3540.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1UAS6_9STRA8.420e-1632.88Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11071contigC-tenellus_contig11071:917..4654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LMX5
PFAMsDnaJ
Model size870
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.23e-70
EggNOG OGsCOG0484@1|root,KOG0714@2759|Eukaryota
Descriptionprotein folding
Cds size870
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789161.4090047-CDS-C-tenellus_contig11071:916..10361680789161.4090047-CDS-C-tenellus_contig11071:916..1036Choristocarpus tenellus KU2346CDSC-tenellus_contig11071 917..1036 +
1680789161.4193947-CDS-C-tenellus_contig11071:1643..18051680789161.4193947-CDS-C-tenellus_contig11071:1643..1805Choristocarpus tenellus KU2346CDSC-tenellus_contig11071 1644..1805 +
1680789161.4333692-CDS-C-tenellus_contig11071:3102..32411680789161.4333692-CDS-C-tenellus_contig11071:3102..3241Choristocarpus tenellus KU2346CDSC-tenellus_contig11071 3103..3241 +
1680789161.4421477-CDS-C-tenellus_contig11071:4205..46541680789161.4421477-CDS-C-tenellus_contig11071:4205..4654Choristocarpus tenellus KU2346CDSC-tenellus_contig11071 4206..4654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11071.1.1prot_C-tenellus_contig11071.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11071 917..4654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11071.1.1

>prot_C-tenellus_contig11071.1.1 ID=prot_C-tenellus_contig11071.1.1|Name=mRNA_C-tenellus_contig11071.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=290bp
KKDADRAVSKRKEEVRLRRKQEEQRRHTAFMACRAGGLDEIKAMLDSGLI
RCTERERDSGQSGASLLHACVTEFGGAAEVVSPGTGELAKHRLGVLLECA
NPQVDAGVVDTAGLTVLHRVAEALDLPYLGLLLEERKKSQERRNQIQLNE
PCLSRGWTPLHYVAAEASTDGVSTLLAAGARVNFQAKPPPGDVSVISKMG
LSSSRGGRNANGGLHGGGGGWGLGDGGGVGAVSKAGATALEVVRALLSQE
RSGGMRKKMLQEVARQLDAAAQEVERAKELRERKEREAKV
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mRNA from alignment at C-tenellus_contig11071:917..4654+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11071.1.1 ID=mRNA_C-tenellus_contig11071.1.1|Name=mRNA_C-tenellus_contig11071.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3738bp|location=Sequence derived from alignment at C-tenellus_contig11071:917..4654+ (Choristocarpus tenellus KU2346)
AAGAAAGACGCAGACAGGGCTGTCTCAAAGAGGAAGGAGGAAGTTCGCTT AAGGCGTAAACAGGAGGAGCAGAGGAGACACACGGCATTCATGGCCTGCA GGGCCGGGGGACTTGATGAGGTGGGGTTTATTGTTGTATTTTATTGTTGT ATGGTATATGTGGGCTGTGTGTAGTGTTTGCATGTTGGCGGTTTTGGTAG TTTGAGTGAGATGTTAGTTGTGAGTGCTTTGTCTGTCTGTGGGTTTGAAG TGATTGGGTGGAAGATTACAATTAGTTGTGAGAATATAGAGGTGGCCATG AGGAAAATAATAATAAATGATAGTAGGAATAATAATGCTGCTAGATGTGG ATTGGTCAATGGGTGACAGGGTTTTGATAACCATTGTAGTATCTCGATAT ATATATGTATATATACATATTTTATTAGCTCGTTGTATATGAGATAAGAC TCTTTGCGATGGCCTGGAGGCAGAGTTGTGTCTTTAGTGTGTGTAGTGTG TGTAGCGTGTGTTTCACTTGGGAGGGGTGTGTGTGGAGTGTGTTTGGGGT TGTGTAAAAGTTAGATGATGCTGGTCTGAGATATGATTCACTATAATCAT GTAGTTTGCTTTTTTTCTTACATACAGGCGTACATACAGGCATACATACA TACAGGCATACACACAGATATTTTAAGAGACTGTCATGTGCAGAGACCTC TAATGAACACCTGTGATGGTTTGTCAGATCAAGGCCATGCTAGACTCGGG TTTGATTCGCTGTACAGAGAGGGAGAGGGACAGTGGACAGTCAGGGGCAT CCTTGCTTCATGCCTGTGTAACGGAGTTTGGGGGTGCTGCTGAGGTTGTG TCACCTGGTACGGGGGAGCTGGCCAAGCACAGGCTTGGGGTTGCTAAGGC AAGGAACACGGAAGGCGTGGAGGAGGGCAGAGTTTACAGTTTTTTGTTGC AAGTTTGATCGGTATGCCTTGGGTTTGGACACTGTCTCGTAGGCGTTTTC TAATGTAAGGGGTGTTCTAGTGTAAGGGGTGTCTACTGAACTGCATCGTA CCATGTATTTCACATTGATTTTGGAGTTAGGTTTAGGGTTAGGGTTAGGG TTAGGGCTGCTGAGAATGGAAATAAAAAATAGTATGGTATTAACTTTTTT CTTATTCTAGTGTTAGGTTTAGGTGTGATTTTTCTGTGTATTATGAAGCA GTAGAGAGGTGAGCACAGGGGGGGGTCATTGACCTGACTCCGCTTTCTTT GAGTTGAATCAAATTTTGGAGGGTCGCTTTTGTGTTGATATTTAGAAGAA GAAAATCAATGTTGAACTTTTTTTTGAAAAAAAAGAAAGTGTTCTGACAT CCATGTCACACACAGTGCGATTTTAGTGTTCCGAAAATAGGAACACGTGT ATAGGTTTTGTCAACGGTGATATGTTTTTTGAAGTTTTTTGAAATGTGAT GATTTTCTTTGTTGAAGTGTGTTGGTAAAACCAATCGACCAAGTAACTGT TGGTATACTCTTAGGGCTAGGGTAACCCTAACCCTAACCCTTTAGTTTAC TTCAATTTGCTGTGCTCTTTCAGTGGAAAGTAAACACTTAAAAATCGAAA GTAATGGTAATAAGAATAGGAATACGATTTTGGAATGTTTTGTTGGAGAG GGAAGGGGGGGAACGGGTTGTTTATATATCTTCTTTTGTTTTATGCTTGA ATACAATTGGTCTACACCTTGTTGTAGGTGGTCACAATGTACCCATCCAG TCGTGAGGGGTGACTTTTTTTCATTTTGAGATTGTACAGATATAACTATA ATAGTATTGCTCCTGAGTGTATGAAAAGAATGGACCTTGTTTTGTTGGCT TGGGAGCTTGAAGTTGGTTGGTAATTGAAAAAAATCCAGATATCACCATT GGTAACACCCCCCTCCCCACTCTAAGATTTAGTGACAAGTACCTGTCTGG AAGTGTTAATAGATATGATTTTTTATGTAGCGACTTTTGTGAGTTTTGTT ATCATTATTGTCTTGAGAATTATTTTTTATTGTTCTGATGTTGAATGTGA TGCATATTGTAAATTTCTCTTGTCAGTTTTTTCATGTGGGCACGATTATA TATTCATCTCACAGAAAGTTATATCGCCTAGGAGGGTTTTGTAAATCCCT TCCCCCTCCTCTTCCTCCACCGTTTCCACCCTACAGGTGTTGCTAGAATG TGCTAACCCACAGGTGGATGCAGGGGTGGTGGACACCGCTGGGCTGACAG TTTTGCACAGGGTTGCAGAGGCGTTGGATCTTCCATATCTTGGCTTGCTG TTGGAGGAGAGGAAGAAGTCGCAAGGTATTCAGTGTTGAGATTTTTTTTT TAGTGTATGTGTGTTGTGGGGGATTGATTTGTGTGACTCTAGGGATTGTG GTGTCGTTGGAGTGGAGTGGGGGGTGGACACAGTGATGTATGGGTTTTGT ATTGGTTCCAAGAAATGGGTTTGGACAGGAAAATATAGAATTGAATATTT TTTGTTAGTTTACTACATTTTTATTTTTATTTTTTATTATTTTGAATACT TTTGTATTGTGCCACCATGCGCTATGTAATGCTGTGGTGATTTGCTGTGA AAGATTCATTGATAGGCAGGATTTTGGTGTTGATAGGTAGTTCTTGATGG GGTGTTGTGTTGGAGTGTGTTGTGTTGGAGTGTGCTTTTTGAGATGGTAC ATCATATGGGAGGCGATTTTTCTGTTCGAGATATTTTTTTGGCAATAGTA GCAAGATTTGTTTGGCCATTCGAAGTTTTATGTTTTGTTCAATAATATTA GTGCCTGCTACAACAGTGAGGTCCTCCCTTGCTCTCCCAAGTACTACAGT CTCTTTTTACTTTTTTTACTTTTTTCCCCTCCCCCTTCTTTCTCTGTTCC AGTTGTGCCTGCTGCTCTCTTGACTGTTTACTCAGTCTGCTTCTACCATC CCCCACACTGTCCCCAGCAAGTTAGTCCACAACCCTATCGTATCGTATCC TGTCCCACCCATCTACTGTCCCCTCTATCCCCATGCCCTCATCTCCAACC GCCTTCACCTTGCCTCAGTGTTCCAATAACTTAGCTATAACTTAGCTATA ACTTAGCTAGTCACAATGCAGATGCACAACAGTACAATACAGTTTCCTGC CCTAACCCTTTCCTCATCCTGACCTGCATGCACGCCTTTCTCTTCCCTTG AAACCCCCGTGCGATCTGAACCTGGGTCCCCCCTCCCTGGCTCTCCTGCT TGTACTGAATCTTGTACTGAATCTTGTATTTTTGCACAGAGCGCCGGAAC CAGATTCAGTTGAACGAGCCATGCCTCAGTCGAGGCTGGACGCCATTGCA TTATGTTGCTGCTGAGGCCAGCACTGATGGTGTGTCCACCCTTCTGGCAG CTGGTGCTAGGGTCAACTTCCAGGCGAAGCCTCCTCCTGGGGATGTCAGT GTGATCTCTAAGATGGGATTGAGTTCGAGCAGAGGGGGGAGGAACGCTAA TGGGGGTTTGCATGGTGGAGGCGGTGGGTGGGGCTTGGGGGATGGTGGAG GCGTCGGTGCTGTGAGTAAGGCGGGTGCAACGGCCTTAGAAGTGGTTCGG GCATTGCTGTCGCAGGAGAGGTCGGGGGGTATGAGGAAGAAGATGCTGCA GGAGGTTGCCAGGCAGCTCGATGCGGCTGCTCAGGAGGTTGAGAGGGCTA AGGAGCTTCGGGAACGCAAGGAACGGGAGGCCAAGGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig11071:917..4654+

>mRNA_C-tenellus_contig11071.1.1 ID=mRNA_C-tenellus_contig11071.1.1|Name=mRNA_C-tenellus_contig11071.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=870bp|location=Sequence derived from alignment at C-tenellus_contig11071:917..4654+ (Choristocarpus tenellus KU2346)
AAGAAAGACGCAGACAGGGCTGTCTCAAAGAGGAAGGAGGAAGTTCGCTT
AAGGCGTAAACAGGAGGAGCAGAGGAGACACACGGCATTCATGGCCTGCA
GGGCCGGGGGACTTGATGAGATCAAGGCCATGCTAGACTCGGGTTTGATT
CGCTGTACAGAGAGGGAGAGGGACAGTGGACAGTCAGGGGCATCCTTGCT
TCATGCCTGTGTAACGGAGTTTGGGGGTGCTGCTGAGGTTGTGTCACCTG
GTACGGGGGAGCTGGCCAAGCACAGGCTTGGGGTGTTGCTAGAATGTGCT
AACCCACAGGTGGATGCAGGGGTGGTGGACACCGCTGGGCTGACAGTTTT
GCACAGGGTTGCAGAGGCGTTGGATCTTCCATATCTTGGCTTGCTGTTGG
AGGAGAGGAAGAAGTCGCAAGAGCGCCGGAACCAGATTCAGTTGAACGAG
CCATGCCTCAGTCGAGGCTGGACGCCATTGCATTATGTTGCTGCTGAGGC
CAGCACTGATGGTGTGTCCACCCTTCTGGCAGCTGGTGCTAGGGTCAACT
TCCAGGCGAAGCCTCCTCCTGGGGATGTCAGTGTGATCTCTAAGATGGGA
TTGAGTTCGAGCAGAGGGGGGAGGAACGCTAATGGGGGTTTGCATGGTGG
AGGCGGTGGGTGGGGCTTGGGGGATGGTGGAGGCGTCGGTGCTGTGAGTA
AGGCGGGTGCAACGGCCTTAGAAGTGGTTCGGGCATTGCTGTCGCAGGAG
AGGTCGGGGGGTATGAGGAAGAAGATGCTGCAGGAGGTTGCCAGGCAGCT
CGATGCGGCTGCTCAGGAGGTTGAGAGGGCTAAGGAGCTTCGGGAACGCA
AGGAACGGGAGGCCAAGGTG
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