mRNA_C-tenellus_contig11071.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig11071.1.1 vs. uniprot
Match: D8LMX5_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX5_ECTSI) HSP 1 Score: 242 bits (617), Expect = 1.360e-69 Identity = 160/277 (57.76%), Postives = 190/277 (68.59%), Query Frame = 1 Query: 22 VSKRKEEVRLRRKQEEQRRHTAFMACRAGGLDEIKAMLDSGLIRCTERERDSGQSGASLLHACVTEFGGAAEVVSPGTGELAKHRLGV---LLECANPQVDAGVVDTAGLTVLHRVAEALDLPYLGLLLEERKKSQERRNQIQLNEPCLSRGWTPLHYVAAEASTDGVSTLLAAGARVNFQAKPPPGDVSVISKMGLSSSRGGRNXXXXXXXXXXXXXXXXXXXXXXVSKAGATALEVVRALLSQERSGGMRKKMLQEVARQLDAAAQEVERAKELR 843 KRKE VRL+RK EE+RR F ACRAG ++E++ ML +GLIRCTERER++G SGASLLH+CVT+F G+ + +P ELA RL + +L +P VDAG VD+ GLTVLHRVAEALDLPYL LLLEER+KSQERR+QI L+E CL +GWTPLHY AAE S GVSTLL AGA V+ + +V+ + SSS G XXXXXXXX G TAL++ RALLS+E G RKK LQEVARQL AA Q VERAKE R Sbjct: 292 ADKRKEVVRLKRKAEEERRVGLFTACRAGFVEEVRLMLGTGLIRCTERERENGSSGASLLHSCVTDFAGSPDN-APQLKELAIDRLSIAAMILASTDPAVDAGWVDSVGLTVLHRVAEALDLPYLALLLEERQKSQERRDQILLDERCLLKGWTPLHYAAAEGSPVGVSTLLTAGASVSVRG-------AVLDGIEPSSSNGAXXXXXXXXXX------------------GGTALQLARALLSKE-GAGPRKKGLQEVARQLSAATQAVERAKEQR 541
BLAST of mRNA_C-tenellus_contig11071.1.1 vs. uniprot
Match: A0A6H5K1P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P9_9PHAE) HSP 1 Score: 151 bits (382), Expect = 1.460e-37 Identity = 127/282 (45.04%), Postives = 156/282 (55.32%), Query Frame = 1 Query: 1 KKDADRAVS-KRKEEVRLRRKQEEQRRHTAFMACRAGGLDEIKAMLDSGLIRCTERERDSGQSGASLLHACVTEFGGAAEVVSPGTGELAKHRLGVLLECANPQVDAGVVDTAGLTVLHRVAEALDLPYLGLLLEERKKSQERRNQIQLNEPCLSRGWTPLHYVAAEASTDGVSTLLAAGARVNFQAKPPPGDVSVISKMGLSSSRGGRNXXXXXXXXXXXXXXXXXXXXXXVSKAGATALEVVRALLSQERSGGMRKKMLQEVARQLDAAAQEVERAKELR 843 KKD + +V+ KRKE VRL+RK EE+RR F ACRAG ++E++ ML +GLIRCTERER++G SGASLLH+CVT+F G+ + +P ELA RL + +LL+ER CL +GWTPLHY AAE S VSTLLAAGA V+ + +V+ + SSS G XXXXXXXX G TAL++ RALLS+E G RKK LQEVARQL AA Q VERAKE R Sbjct: 334 KKDEETSVADKRKEVVRLKRKAEEERRVGLFTACRAGFVEEVRLMLGTGLIRCTERERENGTSGASLLHSCVTDFAGSPDN-APQLKELAVDRLSIA---------------------------------AILLDER---------------CLLKGWTPLHYAAAEGSPVCVSTLLAAGASVSVRG-------AVLDGIEPSSSNGAXXXXXXXXXX------------------GGTALQLARALLSKE-GAGPRKKGLQEVARQLSAATQAVERAKEQR 540
BLAST of mRNA_C-tenellus_contig11071.1.1 vs. uniprot
Match: A0A836CBZ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBZ1_9STRA) HSP 1 Score: 145 bits (365), Expect = 2.610e-35 Identity = 108/269 (40.15%), Postives = 135/269 (50.19%), Query Frame = 1 Query: 88 FMACRAGGLDEIKAMLDSGLIRCT--ERERDSGQSGASLLHACVT-----EFGGAAEVVSPGTGELAKHRLGVLLECANPQVDAGVVDTAGLTVLHRVAEALDLPYLGLLLEERKKSQERR--NQIQLNEPCLSRGWTPLHYVAAEASTDGVSTLLAAGARVNFQAKPPPGDVSVISKMGLSSSRGGRNXXXXXXXXXXXXXXXXXXXXXXVSKAGATALEVVRALLSQERSGGMRKK---MLQEVARQLDAAAQEVERAKELRERKER 858 F ACR G L+E +A+L G T ERE + G+SG SLLHACVT + GG G L +L + E + VD VD GLTVLHR AEA D+P L LL +R +SQ QI LNE CL+RGWTPLHY A+ ST+GV+ LL GA V A PP S GAT L++V+ L+ +R GG R+K L EV R L +A +E ERA+E RE++ER Sbjct: 395 FAACREGALEEARALLQGGAEGATVAEREHEGGKSGPSLLHACVTTEALRKEGGDXXXXXXXAGRLEIAKLLLAWEASAAAVDVACVDEDGLTVLHRAAEACDVPLLRALLADRGESQRPAVTPQILLNERCLARGWTPLHYAASRGSTEGVTVLLGKGAPVGAHAAPPKAP----------------------------------------SDKGATPLDLVKQLV--QRQGGGRRKGGGSLTEVERVLRSALKEAERAREEREQRER 621
BLAST of mRNA_C-tenellus_contig11071.1.1 vs. uniprot
Match: A0A7S1UAS6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAS6_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 8.420e-16 Identity = 72/219 (32.88%), Postives = 95/219 (43.38%), Query Frame = 1 Query: 55 RKQEEQRRHTAFMACRAGGLDEIKAMLDSGL----------------IRCTERERDSGQSGASLLHACVT---EFGGAAEVVSPGTGEL-----------------AKHRLGVLLECANPQVDAGVVDTAGLTVLHRVAEALDLPYLGLLLE----------------ERKKSQERRNQIQLNEPCLSRGWTPLHYVAAEASTDGVSTLLAAGARVNFQ 555 R++EE R F A RAG + ++ +LD +R +ERER+ G+SGA+LLHACV+ GAA V P + A+ R ++D G D G TVLHR A A D +L LLL+ ++KK+ + LN CLSRGWT LHY A LLAAGARV + Sbjct: 139 REREEAARAYLFSAARAGDVGLVQKILDPLAATASAASADYADELLSLRPSERERERGKSGATLLHACVSVNLPSAGAANAVLPKAAQXXXXXXVGGSSGKAVNRPAERRKVAAFLLTQEELDVGAYDEDGCTVLHR-ASASDPLFLQLLLKTVLGVQIGDDGEASKTKKKKASAAHAALDLNNKCLSRGWTALHYSVAAGLAGNCRLLLAAGARVRIR 356 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11071.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig11071.1.1 >prot_C-tenellus_contig11071.1.1 ID=prot_C-tenellus_contig11071.1.1|Name=mRNA_C-tenellus_contig11071.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=290bp KKDADRAVSKRKEEVRLRRKQEEQRRHTAFMACRAGGLDEIKAMLDSGLIback to top mRNA from alignment at C-tenellus_contig11071:917..4654+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig11071.1.1 ID=mRNA_C-tenellus_contig11071.1.1|Name=mRNA_C-tenellus_contig11071.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3738bp|location=Sequence derived from alignment at C-tenellus_contig11071:917..4654+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig11071:917..4654+ >mRNA_C-tenellus_contig11071.1.1 ID=mRNA_C-tenellus_contig11071.1.1|Name=mRNA_C-tenellus_contig11071.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=870bp|location=Sequence derived from alignment at C-tenellus_contig11071:917..4654+ (Choristocarpus tenellus KU2346)back to top |