mRNA_C-tenellus_contig11060.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11060.1.1
Unique NamemRNA_C-tenellus_contig11060.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11060.1.1 vs. uniprot
Match: A0A7S3UVY4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVY4_HETAK)

HSP 1 Score: 73.6 bits (179), Expect = 7.710e-13
Identity = 38/103 (36.89%), Postives = 53/103 (51.46%), Query Frame = 2 
Query:    8 GGVGRVVVQGTGLDTLDLEALFHLAFAPAPQ--ATDELLTRADLSPEEISSLRDAHKNDPLPHGWFYDGSMFVDFDGNRKAEHPDLPSIICRHLEVRNRHDSE 310
            G  G   V G  L  L  + +  +  A AP   A  +L TR  ++  EI  +   H  DPLP GWF+DGS++VD +GNR    PD+   I + +E  NR  S+
Sbjct:    1 GAAGAAAVWGRDLSALAADYVEKVLRAAAPHLPAARDLRTRDSITDIEIKRIERQHNQDPLPEGWFFDGSVYVDINGNRLTHRPDIDHFIEKFIETENRRISD 103
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BLAST of mRNA_C-tenellus_contig11060.1.1 vs. uniprot
Match: A0A1I8IH99_9PLAT (Uncharacterized protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8IH99_9PLAT)

HSP 1 Score: 72.0 bits (175), Expect = 1.350e-10
Identity = 33/97 (34.02%), Postives = 52/97 (53.61%), Query Frame = 2 
Query:   20 RVVVQGTGLDTLDLEALFHLAFAPAPQATDELLTRADLSPEEISSLRDAHKNDPLPHGWFYDGSMFVDFDGNRKAEHPDLPSIICRHLEVRNRHDSE 310
            +VV  G GL+T DL+ +  L  AP       L+ R+DL+P  ++ +      DPLP GWF++G+ ++ FDG     HP L   +  H+   N+  +E
Sbjct:  277 KVVAFGRGLETEDLKRMLRLC-APLKPTRRALMIRSDLTPAAVARIHKERHLDPLPEGWFFNGTKYISFDGESSKTHPSLEKFLESHIAEENKKIAE 372
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BLAST of mRNA_C-tenellus_contig11060.1.1 vs. uniprot
Match: A0A267EXU4_9PLAT (Uncharacterized protein n=4 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267EXU4_9PLAT)

HSP 1 Score: 72.0 bits (175), Expect = 2.350e-10
Identity = 33/97 (34.02%), Postives = 52/97 (53.61%), Query Frame = 2 
Query:   20 RVVVQGTGLDTLDLEALFHLAFAPAPQATDELLTRADLSPEEISSLRDAHKNDPLPHGWFYDGSMFVDFDGNRKAEHPDLPSIICRHLEVRNRHDSE 310
            +VV  G GL+T DL+ +  L  AP       L+ R+DL+P  ++ +      DPLP GWF++G+ ++ FDG     HP L   +  H+   N+  +E
Sbjct:  981 KVVAFGRGLETEDLKRMLRLC-APLKPTRRALMIRSDLTPAAVARIHKERHLDPLPEGWFFNGTKYISFDGESSKTHPSLEKFLESHIAEENKKIAE 1076
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BLAST of mRNA_C-tenellus_contig11060.1.1 vs. uniprot
Match: UPI00077A0318 (uncharacterized protein C20orf194 homolog n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A0318)

HSP 1 Score: 66.6 bits (161), Expect = 2.800e-9
Identity = 36/98 (36.73%), Postives = 53/98 (54.08%), Query Frame = 2 
Query:   23 VVVQGTGLDTLDLEALFHLAFAPAPQATDELLTRADLSPEEISSLRDAHKNDPLPHGWFYDGSMFVDFDGNRKAEHPDLPSIICRHL-----EVRNRH 301
            ++  G  LD   L         PAP   ++L TR DLS +E++++  AHK DPLP GWFY+G  FV  +G +   HP L + I  +L     E++ R+
Sbjct:  121 IIFTGFNLDEQVLRDWLKTCCKPAP-IKEKLKTRKDLSKDELTNISSAHKFDPLPPGWFYNGLQFVSLNGEKDYSHPLLETFIESYLMQINEEIKRRN 217
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BLAST of mRNA_C-tenellus_contig11060.1.1 vs. uniprot
Match: A0A8B8EVP1_CRAVI (uncharacterized protein C20orf194-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8EVP1_CRAVI)

HSP 1 Score: 67.4 bits (163), Expect = 8.140e-9
Identity = 28/67 (41.79%), Postives = 45/67 (67.16%), Query Frame = 2 
Query:  110 ELLTRADLSPEEISSLRDAHKNDPLPHGWFYDGSMFVDFDGNRKAEHPDLPSIICRHLEVRNRHDSE 310
            +LL++ DL+ +EI  +   H  DPLP GWFY+G+ FV FDG ++  HP+L + I  +++ +N+  SE
Sbjct: 1089 KLLSKKDLTKDEIKKIHKEHHLDPLPAGWFYNGTQFVSFDGEKQDLHPNLETFIQDYIDQKNKEVSE 1155
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BLAST of mRNA_C-tenellus_contig11060.1.1 vs. uniprot
Match: A0A4E0QUX3_FASHE (Uncharacterized protein n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A4E0QUX3_FASHE)

HSP 1 Score: 63.5 bits (153), Expect = 1.330e-8
Identity = 29/98 (29.59%), Postives = 54/98 (55.10%), Query Frame = 2 
Query:   50 TLDLEALFHLAFAPAPQATDELLTRADLSPEEISSLRDAHKNDPLPHGWFYDGSMFVDFDGNRKAEHPDLPSIICRHLE-VRNRHDSEQTTVSVAPFP 340
            T++L A +     P  +    LL R DL+ ++++ + D +  +PLP GW+Y G+ +V+ +G++  +HPD+   I  +LE   N+  +    +S  P P
Sbjct:   68 TMELFASWIRQSGPQQEGLKPLLRRCDLTSDDLAKIHDKYHLNPLPPGWYYTGAYYVNMNGDKSFQHPDMEEFITEYLEGENNKIVARNARISRHPVP 165
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BLAST of mRNA_C-tenellus_contig11060.1.1 vs. uniprot
Match: A0A8E0S500_9TREM (Uncharacterized protein n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0S500_9TREM)

HSP 1 Score: 65.1 bits (157), Expect = 1.450e-8
Identity = 31/97 (31.96%), Postives = 53/97 (54.64%), Query Frame = 2 
Query:   53 LDLEALFHLAFAPAPQATDELLTRADLSPEEISSLRDAHKNDPLPHGWFYDGSMFVDFDGNRKAEHPDLPSIICRHLEVRNRHDS-EQTTVSVAPFP 340
            +DL A +     P  +    LL R DLS ++++ + D +  +PLP GWFY G+ +V+ +G++  +HPD+   I  +LE  N   + +   +S  P P
Sbjct:  165 MDLFANWIRQSGPQQEGLKPLLRRCDLSADDLAKIHDKYHLNPLPPGWFYTGAYYVNMNGDKSFQHPDMEDFISEYLEGENNKIAVKNARISRHPVP 261
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BLAST of mRNA_C-tenellus_contig11060.1.1 vs. uniprot
Match: A0A7S2FQA9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FQA9_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.050e-8
Identity = 38/99 (38.38%), Postives = 52/99 (52.53%), Query Frame = 2 
Query:    8 GGVGRVVVQGTGLDTLDLEALFHLAFAPAPQ---ATDELLTRADLSPEEISSLRDAHKNDPLPHGWFYDGSMFVDFDGNRKAEHPDLPSIICRHLEVRN 295
            GGV  VV+ G+  D    EAL  L FA A     A   + +RA L+  E   + + H+NDPLP GWF+DG+ +V+F G R    PD   I+   +   N
Sbjct:   10 GGVITVVLSGSVGDEAQ-EALTRL-FAQAEHREAAPLAMKSRASLTDSETGKVLELHRNDPLPDGWFFDGTRYVNFSGGRAVRRPDEEEILMAWVAEEN 106
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BLAST of mRNA_C-tenellus_contig11060.1.1 vs. uniprot
Match: UPI001CF38DDD (dynein axonemal assembly factor 9-like isoform X1 n=2 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF38DDD)

HSP 1 Score: 65.9 bits (159), Expect = 2.640e-8
Identity = 36/98 (36.73%), Postives = 52/98 (53.06%), Query Frame = 2 
Query:   23 VVVQGTGLDTLDLEALFHLAFAPAPQATDELLTRADLSPEEISSLRDAHKNDPLPHGWFYDGSMFVDFDGNRKAEHPDLPSIICRHL-----EVRNRH 301
            ++  G  LD   L         PAP   ++L TR DLS +E++ +  AHK DPLP GWFY+G  FV  +G +   HP L + I  +L     E++ R+
Sbjct: 1088 IIFTGFNLDEQALRDWLKTCCKPAP-IKEKLKTRKDLSKDELTKISSAHKFDPLPPGWFYNGLHFVSLNGEKDYSHPLLETFIESYLMQINEEIKRRN 1184
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BLAST of mRNA_C-tenellus_contig11060.1.1 vs. uniprot
Match: K1QG41_CRAGI (Uncharacterized protein n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1QG41_CRAGI)

HSP 1 Score: 65.1 bits (157), Expect = 4.370e-8
Identity = 26/65 (40.00%), Postives = 42/65 (64.62%), Query Frame = 2 
Query:  116 LTRADLSPEEISSLRDAHKNDPLPHGWFYDGSMFVDFDGNRKAEHPDLPSIICRHLEVRNRHDSE 310
            +++ DL+ EEI  +   H  DPLP GWFY+G+ FV FDG ++  HP L + I  +++ +N+  +E
Sbjct:  759 ISKKDLTKEEIKKIHKQHHLDPLPAGWFYNGTQFVSFDGEKQDLHPSLETFIQEYIDEKNKEITE 823
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11060.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UVY4_HETAK7.710e-1336.89Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1I8IH99_9PLAT1.350e-1034.02Uncharacterized protein n=1 Tax=Macrostomum lignan... [more]
A0A267EXU4_9PLAT2.350e-1034.02Uncharacterized protein n=4 Tax=Macrostomum lignan... [more]
UPI00077A03182.800e-936.73uncharacterized protein C20orf194 homolog n=1 Tax=... [more]
A0A8B8EVP1_CRAVI8.140e-941.79uncharacterized protein C20orf194-like n=1 Tax=Cra... [more]
A0A4E0QUX3_FASHE1.330e-829.59Uncharacterized protein n=1 Tax=Fasciola hepatica ... [more]
A0A8E0S500_9TREM1.450e-831.96Uncharacterized protein n=1 Tax=Fasciolopsis buski... [more]
A0A7S2FQA9_9STRA2.050e-838.38Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI001CF38DDD2.640e-836.73dynein axonemal assembly factor 9-like isoform X1 ... [more]
K1QG41_CRAGI4.370e-840.00Uncharacterized protein n=1 Tax=Crassostrea gigas ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11060contigC-tenellus_contig11060:2165..4658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog6500.XP_005106096.1
Preferred nameC20orf194
Model size884
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.93e-11
EggNOG OGs28N0U@1|root,2QUJP@2759|Eukaryota,39U03@33154|Opisthokonta,3BFUG@33208|Metazoa,3CX3N@33213|Bilateria
DescriptionChromosome 20 open reading frame 194
Cds size360
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789161.0698988-UTR-C-tenellus_contig11060:2164..26871680789161.0698988-UTR-C-tenellus_contig11060:2164..2687Choristocarpus tenellus KU2346UTRC-tenellus_contig11060 2165..2687 -
1680789161.116188-UTR-C-tenellus_contig11060:4657..46581680789161.116188-UTR-C-tenellus_contig11060:4657..4658Choristocarpus tenellus KU2346UTRC-tenellus_contig11060 4658..4658 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789161.080448-CDS-C-tenellus_contig11060:2687..27941680789161.080448-CDS-C-tenellus_contig11060:2687..2794Choristocarpus tenellus KU2346CDSC-tenellus_contig11060 2688..2794 -
1680789161.089923-CDS-C-tenellus_contig11060:3284..34151680789161.089923-CDS-C-tenellus_contig11060:3284..3415Choristocarpus tenellus KU2346CDSC-tenellus_contig11060 3285..3415 -
1680789161.1035445-CDS-C-tenellus_contig11060:4535..46571680789161.1035445-CDS-C-tenellus_contig11060:4535..4657Choristocarpus tenellus KU2346CDSC-tenellus_contig11060 4536..4657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11060.1.1prot_C-tenellus_contig11060.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11060 2688..4657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11060.1.1

>prot_C-tenellus_contig11060.1.1 ID=prot_C-tenellus_contig11060.1.1|Name=mRNA_C-tenellus_contig11060.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=120bp
MAGGVGRVVVQGTGLDTLDLEALFHLAFAPAPQATDELLTRADLSPEEIS
SLRDAHKNDPLPHGWFYDGSMFVDFDGNRKAEHPDLPSIICRHLEVRNRH
DSEQTTVSVAPFPGERVKD*
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mRNA from alignment at C-tenellus_contig11060:2165..4658-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11060.1.1 ID=mRNA_C-tenellus_contig11060.1.1|Name=mRNA_C-tenellus_contig11060.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2494bp|location=Sequence derived from alignment at C-tenellus_contig11060:2165..4658- (Choristocarpus tenellus KU2346)
AATGGCAGGAGGGGTAGGCCGTGTCGTGGTCCAAGGAACTGGTCTTGACA
CCCTGGATCTCGAGGCACTGTTTCACCTAGCGTTTGCTCCTGCCCCTCAA
GCAACAGATGAGCTGCTGACCAGGTAGTTCAGGAACCTAGGGTGATAATA
GGTCAATCTTTACTATAGACTGTTCGGAGTTGGTGACTAGATAAGAACTT
CCTGCGAATCAGGTCTCGAGAGGCAAATTAATCTTACCATATATAGAGGT
GCATGCCATGACCTCCCTTAGCATATTTTTCATTCGGCCTATATTGGTAT
CCTGAGACAGCTAAAATATTACTTTGAAGTATTCGGAAAATAGGGTTGGA
ATTTTTCGGGGCCAAAAAAAATAAAATGTAACCACCAAAAATAAACAAGG
TAAAGAGGCCTACCTTGGATGCTACTGTACAGAGTACAGTTGCTTGGTCG
GACAGTGGATATGTTTGAGGAACACCATCTTCTTTCATGTTGTACAAGTG
AGCGTTTGGGCTAGCATTTGCGTTTATACTGACACACAGCAAGACACAGA
AGGAAAGGGCACATGAAATACTTGCAACTTTACTCCATTACTTGGTACTA
GCATCTGTTTCGAATAGTAAAGCAAAGGTGGCAGAGTAGGGTGTTTAAAC
CACAGCTCTAAAGGGTGGGATTTCTGTGCTGCCCTGAACAGTTACGTAAT
TTCAAACTATAGCTCCAGGGTTCAATATGCTCAGGGTACAAAGTCAACTG
GGGAGGTGACCAATGACATAAGTGTTACAGAACAGCAATGGACGAGGCAC
GTGTGCTGTCATGTTTGGTTACCGATAAAAAGTCCAACCATCACCTTCTT
GTTGGCACATATTCCTCACCAGGATCCGTCTTTCTTATTCTGTGCGTTAT
TGGCAAGAGTGCAAGGGACAGGAACAAAACCGACACACACTACAGATAAT
CGTGCTTTGTGATTGGACATTGGAGTGCTGCCTCGTGTCACATTCCCACT
TGCCCACAAAAGATCTACTATCATTTCCATAGACAACACTTGTTGCATAC
CTAGATCCATACCACAAACTTCTTCAGCAGGATTTTTCAAGTAGGAACTA
ATCCTACCAGGTGACACAATGACAGTGTGCTAAGCGAAATTTCTCCATGG
ACAGAATTACCGTCCTGATTCCACCTTATTCGCTTGGTCAAAGACTGATT
GATCATTGATTTTGCATATCTGTTTGGTGTTTGCAACTGGAAGAGCTGAC
CTATCTCCAGAGGAGATATCCAGTCTTCGGGACGCGCACAAAAATGACCC
CTTGCCACATGGTTGGTTCTATGATGGCTCTATGTTTGTGGATTTTGATG
GAAATAGGAAGGCAGAGCACCCAGGTGAATACAAGATACACATCTCTTAC
TGTATGGCAACTCACCGGTGGTGTTGGTTTGTATAAATTATCCCACCTTC
ACTTCACCGTTTTCTTTCCCGGTGTTCTTATTGTGCATAAATGATGTAGG
GTACTTCTTAGACACATTTGCTCGAGAATGAAAAGTATCTCATTTGGCTA
TTGGATCTGTGTTCTCAGAGAACGCAGTTTGGGGTGGCTGATCTAGCTGA
GACTTCAGGAACGAAATGTAAATGACAAGGGCACACCCACCATTCTTTTG
TGCTGTATGCTAAAATTTCCTGAAAATTCAAGGCACACGATAGTCAACAA
CAAACAAGTTATTTGGAGTGTCAATGGTTGTGTTTCCTGCTGGCAATCTT
TTTAGACCACAACATGTAGTTAGTGCCAGGATCTTCACACCAGGATGATC
GCAACCCCACCACAGTCTCACTGATCAGCACCAAAACTGCTGCCTGTCGC
TATTGCTTCGGTAGATTTGCCTTCCATAATTTGCAGACATCTGGAGGTAC
GAAATAGACATGATTCTGAGCAGACTACTGTTAGTGTGGCACCCTTCCCT
GGGGAGAGAGTCAAGGATTAGCTGGTGCTGAAACACATGAGTACTTAAGA
CTACCCACAAACGACCAACACAACCGCGTTAAGTCTAATGGTTCATGTTC
CCTCAGACCTAGAAGGACAGGAAGCTATGAAGTGTGTGTCAGGAGGGGGG
GGAGGAGGGACAGTGGACCGTGAAAGGTTCCCTTGGATGTGTGAGGTGCT
GTAATAGAAAGGAGAACATTGAGGTATAGGTCCCAAGTGGGATGTGATAG
TTTGACTGCCTCAACAACCGTCACATGATAATGTGCTGATGCTGGTCTGC
AAGCGTACCATGAATTGTAGTGCATGATACCAGAGCTGTAACAACCATCT
CCACAGCTATTGATGCTCCCCTATGCAGCATCCAGCTTGATTTTCAACAT
GATGGTTGTTGAGGGCGCCACCTTGTACGCTTTTTGTGCTTGTTGTCAAG
CTTGTCGGTTGAACACCCAAGACAAGAATTAGTTAGTTGTTGATGAGAGG
GGGGATTTAAAGCACCCAATTCATGTCACATAACAGTGTAGAAT
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Coding sequence (CDS) from alignment at C-tenellus_contig11060:2165..4658-

>mRNA_C-tenellus_contig11060.1.1 ID=mRNA_C-tenellus_contig11060.1.1|Name=mRNA_C-tenellus_contig11060.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=360bp|location=Sequence derived from alignment at C-tenellus_contig11060:2165..4658- (Choristocarpus tenellus KU2346)
ATGGCAGGAGGGGTAGGCCGTGTCGTGGTCCAAGGAACTGGTCTTGACAC
CCTGGATCTCGAGGCACTGTTTCACCTAGCGTTTGCTCCTGCCCCTCAAG
CAACAGATGAGCTGCTGACCAGAGCTGACCTATCTCCAGAGGAGATATCC
AGTCTTCGGGACGCGCACAAAAATGACCCCTTGCCACATGGTTGGTTCTA
TGATGGCTCTATGTTTGTGGATTTTGATGGAAATAGGAAGGCAGAGCACC
CAGATTTGCCTTCCATAATTTGCAGACATCTGGAGGTACGAAATAGACAT
GATTCTGAGCAGACTACTGTTAGTGTGGCACCCTTCCCTGGGGAGAGAGT
CAAGGATTAG
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