mRNA_C-tenellus_contig11058.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11058.1.1
Unique NamemRNA_C-tenellus_contig11058.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11058.1.1 vs. uniprot
Match: A0A6H5L6P2_9PHAE (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6P2_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 3.840e-29
Identity = 58/74 (78.38%), Postives = 62/74 (83.78%), Query Frame = 1
Query:    1 VDMLILDRTFSSLSACAMRLMGSWTKWAIWGFTGWKADVTSDYLACRCYK---VLACDPEDSIIADTASAKAGV 213
            VD+LILDR+FSSLSA A RLMG WTKWAIWGFTGW A V +DYLACRCYK   VLACDPED IIAD +S KAGV
Sbjct:  583 VDLLILDRSFSSLSAVAQRLMGGWTKWAIWGFTGWDAHVAADYLACRCYKARLVLACDPEDMIIADASSTKAGV 656          
BLAST of mRNA_C-tenellus_contig11058.1.1 vs. uniprot
Match: A0A835YTB0_9STRA (Hydrolase_4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTB0_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.410e-21
Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 VDMLILDRTFSSLSACAMRLMGSWTKWAIWGFTGWKADVTSDYLACRCYKVLACDPEDSIIADTASAKAGVA 216
            VD+ +LDRTFSSL A A RLMG+WT  A+W  T W  +V  D++AC C K++ACDPED IIADTAS KAGVA
Sbjct:  430 VDLAVLDRTFSSLPAAAQRLMGTWTNPAMWALTQWSTNVARDFIACDCAKLVACDPEDVIIADTASLKAGVA 501          
BLAST of mRNA_C-tenellus_contig11058.1.1 vs. uniprot
Match: D7FRK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRK4_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.000e-20
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 1
Query:    1 VDMLILDRTFSSLSACAMRLMGSWTKWAIWGFTGWKADVTSDYLACRCYK 150
            VD+LILDR+FSSLSA A RLMG WTKWAIWGFTGW A V +DYLACRCYK
Sbjct:  274 VDLLILDRSFSSLSAVAQRLMGGWTKWAIWGFTGWDAHVAADYLACRCYK 323          
BLAST of mRNA_C-tenellus_contig11058.1.1 vs. uniprot
Match: A0A7R9U682_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U682_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 9.730e-11
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 1
Query:   13 ILDRTFSSLSACAMRLMGSWTKWAIWGFTGWKADVTSDYLAC-RCYKVLACDPEDSIIADTASAKAGVA 216
            ILDRT +S+   A  L+GSW   A+  FTGW AD+ S  L   + +KV+ CDP D++IA+  S KAGVA
Sbjct:  562 ILDRTLASVGGAASGLLGSWASGALAAFTGWHADLISSLLRSPQVHKVICCDPNDAVIANQVSVKAGVA 630          
BLAST of mRNA_C-tenellus_contig11058.1.1 vs. uniprot
Match: A0A662YK49_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YK49_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.660e-8
Identity = 33/72 (45.83%), Postives = 42/72 (58.33%), Query Frame = 1
Query:    1 VDMLILDRTFSSLSACAMRLMGSWTKWAIWGFTGWKADVTSDYLACRCYKVLACDPEDSIIADTASAKAGVA 216
            V++LI DRTFSS+ A A R++ SW    +     W  D   +YL   C K+L  DP D II D AS K+GVA
Sbjct:  416 VNVLIADRTFSSVPALAQRMVASWAGAVVKQVMRWDTDNVRNYLEAPCAKLLCSDPCDEIILDGASLKSGVA 487          
BLAST of mRNA_C-tenellus_contig11058.1.1 vs. uniprot
Match: A0A662YBX4_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YBX4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.700e-8
Identity = 33/72 (45.83%), Postives = 42/72 (58.33%), Query Frame = 1
Query:    1 VDMLILDRTFSSLSACAMRLMGSWTKWAIWGFTGWKADVTSDYLACRCYKVLACDPEDSIIADTASAKAGVA 216
            V++LI DRTFSS+ A A R++ SW    +     W  D   +YL   C K+L  DP D II D AS K+GVA
Sbjct:  444 VNVLIADRTFSSVPALAQRMVASWAGAVVKQVMRWDTDNVRNYLEAPCAKLLCSDPCDEIILDGASLKSGVA 515          
BLAST of mRNA_C-tenellus_contig11058.1.1 vs. uniprot
Match: A0A0W8C5E8_PHYNI (Abhydrolase domain-containing protein 16B n=22 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C5E8_PHYNI)

HSP 1 Score: 57.4 bits (137), Expect = 6.810e-8
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 1
Query:    1 VDMLILDRTFSSLSACAMRLMGSWTKWAIWGFTGWKADVTSDYLACRCYKVLACDPEDSIIADTASAKAGVA 216
            V++LI DRTF+++ A A R++  W    +     W+ D   +YL   C K+L  DP D II D AS K+GVA
Sbjct:  456 VNVLIADRTFTTVPALAQRMIARWAGTVVDWVMRWETDNVQNYLEATCAKLLCSDPSDEIILDGASLKSGVA 527          
BLAST of mRNA_C-tenellus_contig11058.1.1 vs. uniprot
Match: A0A0P1AU65_PLAHL (Predicted alpha/beta hydrolase BAT5 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AU65_PLAHL)

HSP 1 Score: 57.4 bits (137), Expect = 6.810e-8
Identity = 32/72 (44.44%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    1 VDMLILDRTFSSLSACAMRLMGSWTKWAIWGFTGWKADVTSDYLACRCYKVLACDPEDSIIADTASAKAGVA 216
            V++LI DRTFS+L A A R++  W   A+     W+ D   +Y+   C K+L  DP D II D AS K+GVA
Sbjct:  475 VNVLIADRTFSTLPALAERMIARWAGNAVELIMRWETDNVQNYVHATCAKLLCSDPGDDIILDGASLKSGVA 546          
BLAST of mRNA_C-tenellus_contig11058.1.1 vs. uniprot
Match: A0A813BRI3_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BRI3_9DINO)

HSP 1 Score: 50.8 bits (120), Expect = 1.370e-5
Identity = 28/72 (38.89%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    1 VDMLILDRTFSSLSACAMRLMGSWTKWAIWGFTGWKADVTSDYLACRCYKVLACDPEDSIIADTASAKAGVA 216
            V +LI DRT S+L   A  + G W    +   T   AD T +++  RC+K+L CDP D++I + AS +  VA
Sbjct:  413 VQILITDRTMSTLEGAAKCMYGGWAAKGL-RVTSMVADNTENFVEVRCHKLLICDPRDTMILELASLRTAVA 483          
BLAST of mRNA_C-tenellus_contig11058.1.1 vs. uniprot
Match: A0A812ZXY4_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZXY4_SYMMI)

HSP 1 Score: 50.8 bits (120), Expect = 1.390e-5
Identity = 28/72 (38.89%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    1 VDMLILDRTFSSLSACAMRLMGSWTKWAIWGFTGWKADVTSDYLACRCYKVLACDPEDSIIADTASAKAGVA 216
            V +LI DRT S+L   A  + G W    +   T   AD T +++  RC+K+L CDP D++I + AS +  VA
Sbjct:  413 VQILITDRTMSTLEGAAKCMYGGWAAKGL-RVTSMVADNTENFVEVRCHKLLICDPRDTMILELASLRTAVA 483          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11058.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5L6P2_9PHAE3.840e-2978.38AB hydrolase-1 domain-containing protein n=1 Tax=E... [more]
A0A835YTB0_9STRA1.410e-2163.89Hydrolase_4 domain-containing protein n=1 Tax=Trib... [more]
D7FRK4_ECTSI1.000e-2082.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9U682_9STRA9.730e-1149.28Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A662YK49_9STRA2.660e-845.83Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662YBX4_9STRA2.700e-845.83Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A0W8C5E8_PHYNI6.810e-841.67Abhydrolase domain-containing protein 16B n=22 Tax... [more]
A0A0P1AU65_PLAHL6.810e-844.44Predicted alpha/beta hydrolase BAT5 n=1 Tax=Plasmo... [more]
A0A813BRI3_9DINO1.370e-538.89Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A812ZXY4_SYMMI1.390e-538.89Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11058contigC-tenellus_contig11058:803..1684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog157072.XP_008868826.1
Preferred nameABHD16A
PFAMsAbhydrolase_1
Model size216
Max annot lvl2759|Eukaryota
KEGG koko:K08869
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006082,GO:0006629,GO:0006631,GO:0006638,GO:0006639,GO:0006690,GO:0006692,GO:0006693,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016298,GO:0016787,GO:0016788,GO:0019752,GO:0032787,GO:0033559,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0046461,GO:0046462,GO:0046464,GO:0046486,GO:0046503,GO:0047372,GO:0052651,GO:0052689,GO:0071704,GO:0072329,GO:1901523,GO:1901568,GO:1901569,GO:1901575,GO:1905344
Exons2
Evalue1.19e-12
EggNOG OGsKOG1553@1|root,KOG1553@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_006880.1
Descriptionprostaglandin catabolic process
Cds size210
COG categoryS
BRITEko00000,ko01001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.9792724-UTR-C-tenellus_contig11058:802..8081680789160.9792724-UTR-C-tenellus_contig11058:802..808Choristocarpus tenellus KU2346UTRC-tenellus_contig11058 803..808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.9934015-CDS-C-tenellus_contig11058:808..9521680789160.9934015-CDS-C-tenellus_contig11058:808..952Choristocarpus tenellus KU2346CDSC-tenellus_contig11058 809..952 +
1680789161.0030565-CDS-C-tenellus_contig11058:1618..16841680789161.0030565-CDS-C-tenellus_contig11058:1618..1684Choristocarpus tenellus KU2346CDSC-tenellus_contig11058 1619..1684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11058.1.1prot_C-tenellus_contig11058.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11058 809..1684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11058.1.1

>prot_C-tenellus_contig11058.1.1 ID=prot_C-tenellus_contig11058.1.1|Name=mRNA_C-tenellus_contig11058.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=70bp
MLILDRTFSSLSACAMRLMGSWTKWAIWGFTGWKADVTSDYLACRCYKVL
ACDPEDSIIADTASAKAGVA
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mRNA from alignment at C-tenellus_contig11058:803..1684+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11058.1.1 ID=mRNA_C-tenellus_contig11058.1.1|Name=mRNA_C-tenellus_contig11058.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=882bp|location=Sequence derived from alignment at C-tenellus_contig11058:803..1684+ (Choristocarpus tenellus KU2346)
GTAGACATGCTGATCCTAGATCGAACATTCTCATCCCTCTCTGCTTGTGC CATGAGGCTTATGGGGTCATGGACAAAGTGGGCTATCTGGGGTTTCACAG GATGGAAGGCGGATGTGACATCAGACTACCTCGCCTGCCGATGCTACAAG GTTTGAATGCTGCCAAGGAGTGTGTGCTAATGCACAACTATTTTTAATAT ATATATATATATATATATATTAAATTGCACTACTGGCGCCTGTGTAATAG TGGACATAACAATAATTTTTTAGTAACTGCTAGTATTGGTTGATTGATGT AATGAGATGGTGTCTGGTAACTCTAGACTGATGGACTCTCATGGCTGATA AAATGTCAACCGATGACAACACTATATCATGCCTGAATTATAAGACACAA TAATTGATATTATAAAAGACATTGGTCATCAAATTGATCAGCTAGTATCT GAATTATAAGACACAATTAATTGATATTATAAAAGACATTGGTCATCAAA TTGATCAGCTAGTATCTGAAATAAAAAGACAAAACACACAAATTGCTGAG CTAAAATCTCAAAACCAAGAATGAAAAAAGAACAACCAGGCTACTCTTGA TCTTAAGATTAAAGAATATGTTCAAGAGCTCAAACGAATTAGGACTCAAC TTATAAGTACCAACTGACAACAAACACGCCTGATAAGTATGAACCGGTTC CTCTTGACAAGCACCTGATAACCATAGGCTGGTGACACTTGACAAATGCG GAGGGTTAATTCGAACACTGCACCAAATCACCACCATATTGATTCTGTGC TATTGATAACTCCAAGGTTCTTGCGTGTGATCCGGAAGATTCCATCATCG CTGATACCGCCTCTGCCAAGGCTGGCGTGGCT
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Coding sequence (CDS) from alignment at C-tenellus_contig11058:803..1684+

>mRNA_C-tenellus_contig11058.1.1 ID=mRNA_C-tenellus_contig11058.1.1|Name=mRNA_C-tenellus_contig11058.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=210bp|location=Sequence derived from alignment at C-tenellus_contig11058:803..1684+ (Choristocarpus tenellus KU2346)
ATGCTGATCCTAGATCGAACATTCTCATCCCTCTCTGCTTGTGCCATGAG
GCTTATGGGGTCATGGACAAAGTGGGCTATCTGGGGTTTCACAGGATGGA
AGGCGGATGTGACATCAGACTACCTCGCCTGCCGATGCTACAAGGTTCTT
GCGTGTGATCCGGAAGATTCCATCATCGCTGATACCGCCTCTGCCAAGGC
TGGCGTGGCT
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