mRNA_C-tenellus_contig11057.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11057.3.1
Unique NamemRNA_C-tenellus_contig11057.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11057.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11057contigC-tenellus_contig11057:4347..4647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size303
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.845865-CDS-C-tenellus_contig11057:4346..46461680789160.845865-CDS-C-tenellus_contig11057:4346..4646Choristocarpus tenellus KU2346CDSC-tenellus_contig11057 4347..4646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11057.3.1prot_C-tenellus_contig11057.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11057 4347..4646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11057.3.1

>prot_C-tenellus_contig11057.3.1 ID=prot_C-tenellus_contig11057.3.1|Name=mRNA_C-tenellus_contig11057.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=100bp
TWTRVKCLNCWEEGLLQSISLQGTVNPSAEVEVLTWAGEQRSKMDGETRG
VNVSLGTVVDPNEGGVFGPERWCLDFGTSKSMTNDATNTQISKPCCDGRC
back to top

mRNA from alignment at C-tenellus_contig11057:4347..4647+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11057.3.1 ID=mRNA_C-tenellus_contig11057.3.1|Name=mRNA_C-tenellus_contig11057.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=301bp|location=Sequence derived from alignment at C-tenellus_contig11057:4347..4647+ (Choristocarpus tenellus KU2346)
ACTTGGACTCGTGTCAAGTGCTTGAACTGTTGGGAGGAGGGACTACTGCA
GTCAATTTCTTTACAGGGAACAGTGAATCCGTCCGCTGAGGTGGAGGTGT
TGACTTGGGCAGGGGAGCAGCGCAGCAAGATGGATGGAGAAACTCGGGGA
GTAAATGTTTCTCTAGGCACTGTGGTAGATCCAAATGAAGGGGGAGTGTT
TGGCCCTGAAAGGTGGTGTCTTGACTTTGGGACATCCAAGAGTATGACTA
ATGATGCGACCAACACACAAATTTCCAAACCCTGTTGTGATGGTCGTTGC
A
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig11057:4347..4647+

>mRNA_C-tenellus_contig11057.3.1 ID=mRNA_C-tenellus_contig11057.3.1|Name=mRNA_C-tenellus_contig11057.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=300bp|location=Sequence derived from alignment at C-tenellus_contig11057:4347..4647+ (Choristocarpus tenellus KU2346)
ACTTGGACTCGTGTCAAGTGCTTGAACTGTTGGGAGGAGGGACTACTGCA
GTCAATTTCTTTACAGGGAACAGTGAATCCGTCCGCTGAGGTGGAGGTGT
TGACTTGGGCAGGGGAGCAGCGCAGCAAGATGGATGGAGAAACTCGGGGA
GTAAATGTTTCTCTAGGCACTGTGGTAGATCCAAATGAAGGGGGAGTGTT
TGGCCCTGAAAGGTGGTGTCTTGACTTTGGGACATCCAAGAGTATGACTA
ATGATGCGACCAACACACAAATTTCCAAACCCTGTTGTGATGGTCGTTGC
back to top