mRNA_C-tenellus_contig11056.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Match: A0A085N6C0_9BILA (Uncharacterized protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085N6C0_9BILA) HSP 1 Score: 132 bits (331), Expect = 1.150e-30 Identity = 88/287 (30.66%), Postives = 133/287 (46.34%), Query Frame = 1 Query: 55 TLNDWHNILGYINPSAIKHLEKRGCSEITDATAASELWCETC------KEYKSEVLSYQRGGRTPKQSGEVVHTDLAGPF-QADITGHKYFQVFVDESSRDKRLYGLKTKNATADATAAYIDQMARE-GIHVQCISGDGASELWRSVKSQRMLANNGTRWRKSPPRTPQSNGIAERAIKQLMGAAKSQVAKAGLGDEYWFFAITDVAFKTGGMPHEYLGRETPYERLTGKSFNYDRLRTWGSKCYVHQDKQQRGIGSKFHPYAKRGMIMGHDRTSLCWYIWLPREAK 891 +L WH LG+I+ IK + K+ T + +CE C + EV R GE++HTD+ GPF Q I G YF F DESS +++Y +K K+ I ++ RE G V+C+ D +E L NG +SPP TP+SNG+AER + L+ A+S + L W A+ A+ +P+ TPYER GK + LR +G YVH Q R K P A++ + +G+ ++ + I+ R+ + Sbjct: 510 SLELWHQRLGHISIDKIKAMSKQNLVNGLQITGEQKFFCEGCIFGSMSRNPHREVTE-----RRDCLPGEILHTDVCGPFIQPSIGGSLYFVCFKDESSGYRKVYFMKRKDEVLKYLKLVITEVKRETGRAVKCLRSDCGTEFVNKTVGD-FLVENGILHERSPPYTPESNGMAERENRTLVEKARSTLCTRNLPKSLWAEAVYTAAYLMNRVPNRKENTATPYERWFGKRPSVGHLRVFGCDAYVHVPAQHR---KKLDPKARKVVFVGYGLSNKIYRIYDSRKHR 787
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Match: W8ADM5_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8ADM5_CERCA) HSP 1 Score: 129 bits (323), Expect = 1.180e-29 Identity = 78/280 (27.86%), Postives = 135/280 (48.21%), Query Frame = 1 Query: 64 DWHNILGYINPSAIKHLE-KRGCSEITDATAASELWCETCKEYKSEVLSY-QRGGRTPKQSGEVVHTDLAGPF-QADITGHKYFQVFVDESSRDKRLYGLKTKNATADATAAYIDQMARE-GIHVQCISGDGASELWRSVKSQRMLANNGTRWRKSPPRTPQSNGIAERAIKQLMGAAKSQVAKAGLGDEYWFFAITDVAFKTGGMPHEYLGRETPYERLTGKSFNYDRLRTWGSKCYVHQDKQQRGIGSKFHPYAKRGMIMGHDRTSLCWYIWLPREAK 891 DWHN G++N ++K + K+ + ++ C +C E K V + Q K+ E++HTD+ GP + I G +YF F+D+ SR K +Y LK+K+ A ++ ++ ++ + D E + S + L NG + + P TPQ NG+AERA + L+ A+S + +GLG+ +W A+ A+ + L TPYE T + N L+ +G ++R KF P K+ +++G+ S + ++ P K Sbjct: 398 DWHNKFGHLNVQSLKEMHNKKLVHGLKLKNVPMKMQCTSCAESKICVNKFPQESKNRAKKLCEIIHTDICGPINKKSIGGSRYFATFIDDMSRYKCVYFLKSKDEIFSAFKSFKAMAEKQTNCKIKILRSDNGRE-YLSKNFENFLKENGIVRQLTVPYTPQQNGVAERANRTLVEMARSMIVHSGLGECFWAEAVATAAYLQNRSVTKSLANRTPYEAWTSRKPNVSHLKVFGQLAIAIDKTEKR----KFQPKGKKMVMVGYSDVSKAYRLYDPASKK 672
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Match: A0A0V1GWK2_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1GWK2_9BILA) HSP 1 Score: 120 bits (302), Expect = 2.890e-27 Identity = 83/273 (30.40%), Postives = 131/273 (47.99%), Query Frame = 1 Query: 67 WHNILGYINPSAIKHLEKRGCSEITDATAASELWCETCKEYKSEVLSYQRGGRTPKQS--GEVVHTDLAGPF-QADITGHKYFQVFVDESSRDKRLYGLKTKNATADATAAYIDQMARE-GIHVQCISGDGASELWRSVKSQRMLANNGTRWRKSPPRTPQSNGIAERAIKQLMGAAKSQVAKAGLGDEYWFFAITDVAFKTGGMPHEYLGRETPYERLTGKSFNYDRLRTWGSKCYVHQDKQQRGIGSKFHPYAKRGMIMGHDRTSLCWYIW 873 WH LG+I+ IK + +R + ATA + +CE C + S + +QS GE++H D+ GPF + G++YF F DESS +++Y +KTK+ + ++ +E G VQ I DG +E + L KSPP TPQ NG+AER + L+ A+S + L W A+ A+ +P+ TPYE+ GK + LR +G YVH Q R KF A++ + +G+ + + ++ Sbjct: 208 WHQRLGHISVEKIKTMMQRNLVDGLRATAEEKFFCEGCV-FGSMTRKPHKEVTERRQSVPGEILHADVCGPFIHPSVGGNRYFICFKDESSGYRKVYFMKTKDEVLRCLKIALTEIKQETGRDVQRIRTDGGTEFVNR-EFDNFLTEKKIVHEKSPPYTPQCNGMAERENRTLVEKARSMLHARNLPRCLWAEAVHTAAYLLNHIPNRKETTNTPYEKWFGKRPTVEHLRIFGCDAYVHIPDQYR---KKFDRKARKVIFVGYGPNNKMFRVF 475
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Match: A0A0V1NYN8_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella sp. T8 TaxID=92180 RepID=A0A0V1NYN8_9BILA) HSP 1 Score: 118 bits (295), Expect = 1.060e-26 Identity = 81/274 (29.56%), Postives = 135/274 (49.27%), Query Frame = 1 Query: 67 WHNILGYINPSAIKHLEKRGCSEITDATAASELWCETCKEYKSEVLSYQRGGRTPKQS--GEVVHTDLAGPF-QADITGHKYFQVFVDESSRDKRLYGLKTKNATADATAAYIDQMARE-GIHVQCISGDGASELWRSVKSQRMLANNGTRWRKSPPRTPQSNGIAERAIKQLMGAAKSQVAKAGLGDEYWFFAITDVAFKTGGMPHEYLGRETPYERLTGKSFNYDRLRTWGSKCYVH-QDKQQRGIGSKFHPYAKRGMIMGHDRTSLCWYIW 873 WH LG+I+ IK + +R + ATA + +CE C + S + +QS GE++H D+ GPF + G++YF F DESS +++Y +KTK+ + ++ +E G VQ I D +E + + L K+PP TPQ NG+AER + L+ A++ + L W A+ A+ +P+ +TPYE G+ + LR +G YVH D+ QR KF P A++ + +G+ ++ + ++ Sbjct: 13 WHQRLGHISVEKIKTMMQRKLVDGLRATAEEKFFCEGCV-FGSMTRKPHKEVTERRQSVPGEIIHADVCGPFIHPSVGGNRYFICFKDESSGYRKVYFMKTKDEVLRCLKTVLTEIKQETGRDVQRIRTDRGTEF-ANRELDNFLTEKKIVHEKTPPYTPQCNGMAERENRTLVEKARAMLHTRNLPRCLWAEAVHTAAYLLNRIPNRKEITKTPYEEWFGRRPTVEHLRIFGCDAYVHIPDQHQR----KFDPKARKVIFVGYGPSNKMFRVF 280
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Match: UPI001F01248C (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium pseudokroppenstedtii TaxID=2804917 RepID=UPI001F01248C) HSP 1 Score: 117 bits (293), Expect = 1.510e-26 Identity = 80/278 (28.78%), Postives = 131/278 (47.12%), Query Frame = 1 Query: 67 WHNILGYINPSAIKHLEKRGCSEITDATAASELWCETCKEYKSEVLSYQRGGRTPK-QSGEVVHTDLAGPFQAD-ITGHKYFQVFVDESSRDKRLYGLKTKNATADATAAYIDQMARE-GIHVQCISGDGASELWRSVKSQRMLANNGTRWRKSPPRTPQSNGIAERAIKQLMGAAKSQVAKAGLGDEYWFFAITDVAFKTGGMPHEYLGRETPYERLTGKSFNYDRLRTWGSKCYVHQDKQQRGIGSKFHPYAKRGMIMGHDRTSLCWYIWLPREAK 891 WH L +I+ + L K+ ++D A CE C K +S++ + K + E+VH+DL GP + + G YF F+D+ SR ++ LKTK+ + + RE G ++CI D E + G R +K+PP+TPQ NG+AER + LM + +++A L + +W A+ A P L + P + GK +YD LR +G K +VH K +R SK ++ + +G+ + ++ P E K Sbjct: 34 WHKRLSHISEKGLNVLAKKKL--LSDCKGAKLEKCEHCLAGKQNRVSFKSNPPSRKTELLELVHSDLCGPMKTKTLGGALYFVTFIDDCSRKLWVFVLKTKDQVLGVFKQFQASVERETGKKLKCIRTDNGGEYCGPFDEY--CKHQGIRHQKTPPKTPQLNGLAERMNRTLMERVRCLLSEAKLPNSFWGEALLTAAHVINLSPTVALQGDVPNKVWYGKDVSYDHLRVFGCKAFVHVPKDER---SKLDAKTRQCIFVGYGLDEFGYRLYDPIEKK 304
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Match: UPI001EFFA561 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001EFFA561) HSP 1 Score: 119 bits (297), Expect = 3.130e-26 Identity = 81/278 (29.14%), Postives = 131/278 (47.12%), Query Frame = 1 Query: 67 WHNILGYINPSAIKHLEKRGCSEITDATAASELWCETCKEYKSEVLSYQRGGRTPK-QSGEVVHTDLAGPFQAD-ITGHKYFQVFVDESSRDKRLYGLKTKNATADATAAYIDQMARE-GIHVQCISGDGASELWRSVKSQRMLANNGTRWRKSPPRTPQSNGIAERAIKQLMGAAKSQVAKAGLGDEYWFFAITDVAFKTGGMPHEYLGRETPYERLTGKSFNYDRLRTWGSKCYVHQDKQQRGIGSKFHPYAKRGMIMGHDRTSLCWYIWLPREAK 891 WH L +I+ + L K+ ++D A CE C K +S++ + K + E+VH+DL GP + + G YF F+D+ SR +Y LKTK+ + + RE G ++CI D E + G R +K+PP+TPQ NG+AER + LM + +++A L + +W A+ A P L + P + GK +YD LR +G K +VH K +R SK ++ + +G+ + ++ P E K Sbjct: 188 WHKRLSHISEKGLNVLAKKKL--LSDCKGAKLEKCEHCLAGKQNRVSFKSNPPSRKTELLELVHSDLCGPMKTKTLGGALYFVTFIDDCSRKLWVYVLKTKDQVLGVFKQFQASVERETGKKLKCIRTDNGGEYCGPFDEY--CKHQGIRHQKTPPKTPQLNGLAERMNRTLMERVRCLLSEAKLPNSFWGEALLTAAHVINLSPTVALQGDVPNKVWYGKDVSYDHLRVFGCKAFVHVPKDER---SKLDAKTRQCIFVGYGLDEFGYRLYDPIEKK 458
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Match: A0A0V0REQ0_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=9 Tax=Trichinella TaxID=6333 RepID=A0A0V0REQ0_9BILA) HSP 1 Score: 118 bits (295), Expect = 5.570e-26 Identity = 80/273 (29.30%), Postives = 133/273 (48.72%), Query Frame = 1 Query: 67 WHNILGYINPSAIKHLEKRGCSEITDATAASELWCETCKEYKSEVLSYQRGGRTPKQS--GEVVHTDLAGPF-QADITGHKYFQVFVDESSRDKRLYGLKTKNATADATAAYIDQMARE-GIHVQCISGDGASELWRSVKSQRMLANNGTRWRKSPPRTPQSNGIAERAIKQLMGAAKSQVAKAGLGDEYWFFAITDVAFKTGGMPHEYLGRETPYERLTGKSFNYDRLRTWGSKCYVHQDKQQRGIGSKFHPYAKRGMIMGHDRTSLCWYIW 873 WH LG+I+ IK + +R + ATA + +CE C + S + +QS GE++H D+ GPF + G++YF F DESS +++Y +KTK+ + ++ +E G VQ I D +E + + L K+PP TPQ NG+AER + L+ A++ + L W A+ A+ +P+ +TPYE G+ + LR +G YVH Q R KF P A++ + +G+ ++ + ++ Sbjct: 106 WHQRLGHISVEKIKTMMQRKLVDGLRATAEEKFFCEGCV-FGSMTRKPHKEVTERRQSVPGEIIHADVCGPFIHPSVGGNRYFICFKDESSGYRKVYFMKTKDEVLRCLKTALTEIKQETGRDVQRIRTDRGTEF-ANRELDNFLTEKKIVHEKTPPYTPQCNGMAERENRTLVEKARAMLHTRNLPRCLWAEAVHTAAYLLNRIPNRKEITKTPYEEWFGRRPTVEHLRIFGCDAYVHIPDQHR---RKFDPKARKVIFVGYGPSNKMFRVF 373
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Match: A0A0V1A3R1_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V1A3R1_9BILA) HSP 1 Score: 117 bits (294), Expect = 7.700e-26 Identity = 80/273 (29.30%), Postives = 133/273 (48.72%), Query Frame = 1 Query: 67 WHNILGYINPSAIKHLEKRGCSEITDATAASELWCETCKEYKSEVLSYQRGGRTPKQS--GEVVHTDLAGPF-QADITGHKYFQVFVDESSRDKRLYGLKTKNATADATAAYIDQMARE-GIHVQCISGDGASELWRSVKSQRMLANNGTRWRKSPPRTPQSNGIAERAIKQLMGAAKSQVAKAGLGDEYWFFAITDVAFKTGGMPHEYLGRETPYERLTGKSFNYDRLRTWGSKCYVHQDKQQRGIGSKFHPYAKRGMIMGHDRTSLCWYIW 873 WH LG+I+ IK + +R + ATA + +CE C + S + +QS GE++H D+ GPF + G++YF F DESS +++Y +KTK+ + ++ +E G VQ I D +E + + L K+PP TPQ NG+AER + L+ A++ + L W A+ A+ +P+ +TPYE G+ + LR +G YVH Q R KF P A++ + +G+ ++ + ++ Sbjct: 707 WHQRLGHISVEKIKTMMQRKLVDGLRATAEEKFFCEGCV-FGSMTRKPHKEVTERRQSVPGEIIHADVCGPFIHPSVGGNRYFICFKDESSGYRKVYFMKTKDEVLRCLKIALTEIKQETGRDVQRIRTDRGTEF-ANRELDNFLTEKKIVHEKTPPYTPQCNGMAERENRTLVEKARAMLHTRNLPRCLWAEAVHTAAYLLNRIPNRKEITKTPYEEWFGRRPTVEHLRIFGCDAYVHIPDQHR---RKFDPKARKVIFVGYGPSNKMFRVF 974
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Match: A0A0V1NGU6_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella sp. T8 TaxID=92180 RepID=A0A0V1NGU6_9BILA) HSP 1 Score: 114 bits (284), Expect = 8.960e-26 Identity = 79/263 (30.04%), Postives = 128/263 (48.67%), Query Frame = 1 Query: 67 WHNILGYINPSAIKHLEKRGCSEITDATAASELWCETCKEYKSEVLSYQRGGRTPKQS--GEVVHTDLAGPF-QADITGHKYFQVFVDESSRDKRLYGLKTKNATADATAAYIDQMARE-GIHVQCISGDGASELWRSVKSQRMLANNGTRWRKSPPRTPQSNGIAERAIKQLMGAAKSQVAKAGLGDEYWFFAITDVAFKTGGMPHEYLGRETPYERLTGKSFNYDRLRTWGSKCYVHQDKQQRGIGSKFHPYAKRGMIMGH 843 WH LG+I+ IK + +R + ATA + +CE C + S + +QS GE++H D+ GPF + G++YF F DESS +++Y +KTK+ + ++ +E G VQ I + +E + + L K+PP TPQ NG+AER + L+ A++ + L W A+ A+ +P+ +TPYE G+ + LR +G YVH Q R KF P A++ + +G+ Sbjct: 16 WHQRLGHISVEKIKTVMQRKFVDGLRATAEEKFFCEGCV-FGSMTRKLHKEVTERRQSVPGEIIHADVCGPFIHPSVGGNRYFICFKDESSGYRKVYFMKTKDEVLRCLKIALTEIKQETGRDVQRIRTNRGTEF-ANRELDNFLTEKKIVHEKTPPYTPQCNGMAERENRTLVEKARAMLHTRNLPRCLWAEAVHTAAYLLKRIPNRKEITKTPYEEWFGRRPTVEHLRIFGCDAYVHIPDQHR---RKFDPKARKVIFVGY 273
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Match: A0A0V1CBZ4_TRIBR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella britovi TaxID=45882 RepID=A0A0V1CBZ4_TRIBR) HSP 1 Score: 117 bits (293), Expect = 9.160e-26 Identity = 80/273 (29.30%), Postives = 133/273 (48.72%), Query Frame = 1 Query: 67 WHNILGYINPSAIKHLEKRGCSEITDATAASELWCETCKEYKSEVLSYQRGGRTPKQS--GEVVHTDLAGPF-QADITGHKYFQVFVDESSRDKRLYGLKTKNATADATAAYIDQMAREGIH-VQCISGDGASELWRSVKSQRMLANNGTRWRKSPPRTPQSNGIAERAIKQLMGAAKSQVAKAGLGDEYWFFAITDVAFKTGGMPHEYLGRETPYERLTGKSFNYDRLRTWGSKCYVHQDKQQRGIGSKFHPYAKRGMIMGHDRTSLCWYIW 873 WH LG+I+ IK + +R + ATA + +CE C + S + +QS GE++H D+ GPF + + G++YF F DESS + +Y +KTK+ + ++ +E VQ I D +E + + L K+PP TPQ NG+AER K L+ A++ + L W A+ A+ +P+ +TPYE G+ + LR +G YVH +Q R KF P A++ + +G+ ++ + ++ Sbjct: 16 WHQRLGHISVEKIKTMMQRKLVDGLRATAEEKFFCEGCV-FGSMTWKPHKEVTERRQSVPGEIIHADVCGPFIHSSVGGNRYFICFKDESSGYRNVYFMKTKDEVLRCLKTALTEIKQETRRDVQRIRTDRGTEF-ANRELDNFLTEKKIVHEKTPPYTPQCNGMAERENKTLVEKARAMLHTRNLPRCLWAEAVHTAAYLLNRIPNRKEITKTPYEEWFGRRPTVEHLRIFGCDAYVHIPEQHR---RKFDPKARKVIFVGYGPSNKMFRVF 283 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig11056.1.1 >prot_C-tenellus_contig11056.1.1 ID=prot_C-tenellus_contig11056.1.1|Name=mRNA_C-tenellus_contig11056.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=298bp MEQESRASAARANQKQRLTLNDWHNILGYINPSAIKHLEKRGCSEITDATback to top mRNA from alignment at C-tenellus_contig11056:4460..5353+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig11056.1.1 ID=mRNA_C-tenellus_contig11056.1.1|Name=mRNA_C-tenellus_contig11056.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=894bp|location=Sequence derived from alignment at C-tenellus_contig11056:4460..5353+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig11056:4460..5353+ >mRNA_C-tenellus_contig11056.1.1 ID=mRNA_C-tenellus_contig11056.1.1|Name=mRNA_C-tenellus_contig11056.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=894bp|location=Sequence derived from alignment at C-tenellus_contig11056:4460..5353+ (Choristocarpus tenellus KU2346)back to top |