mRNA_C-tenellus_contig11056.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11056.1.1
Unique NamemRNA_C-tenellus_contig11056.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Match: A0A085N6C0_9BILA (Uncharacterized protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085N6C0_9BILA)

HSP 1 Score: 132 bits (331), Expect = 1.150e-30
Identity = 88/287 (30.66%), Postives = 133/287 (46.34%), Query Frame = 1
Query:   55 TLNDWHNILGYINPSAIKHLEKRGCSEITDATAASELWCETC------KEYKSEVLSYQRGGRTPKQSGEVVHTDLAGPF-QADITGHKYFQVFVDESSRDKRLYGLKTKNATADATAAYIDQMARE-GIHVQCISGDGASELWRSVKSQRMLANNGTRWRKSPPRTPQSNGIAERAIKQLMGAAKSQVAKAGLGDEYWFFAITDVAFKTGGMPHEYLGRETPYERLTGKSFNYDRLRTWGSKCYVHQDKQQRGIGSKFHPYAKRGMIMGHDRTSLCWYIWLPREAK 891
            +L  WH  LG+I+   IK + K+        T   + +CE C      +    EV       R     GE++HTD+ GPF Q  I G  YF  F DESS  +++Y +K K+         I ++ RE G  V+C+  D  +E          L  NG    +SPP TP+SNG+AER  + L+  A+S +    L    W  A+   A+    +P+      TPYER  GK  +   LR +G   YVH   Q R    K  P A++ + +G+  ++  + I+  R+ +
Sbjct:  510 SLELWHQRLGHISIDKIKAMSKQNLVNGLQITGEQKFFCEGCIFGSMSRNPHREVTE-----RRDCLPGEILHTDVCGPFIQPSIGGSLYFVCFKDESSGYRKVYFMKRKDEVLKYLKLVITEVKRETGRAVKCLRSDCGTEFVNKTVGD-FLVENGILHERSPPYTPESNGMAERENRTLVEKARSTLCTRNLPKSLWAEAVYTAAYLMNRVPNRKENTATPYERWFGKRPSVGHLRVFGCDAYVHVPAQHR---KKLDPKARKVVFVGYGLSNKIYRIYDSRKHR 787          
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Match: W8ADM5_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8ADM5_CERCA)

HSP 1 Score: 129 bits (323), Expect = 1.180e-29
Identity = 78/280 (27.86%), Postives = 135/280 (48.21%), Query Frame = 1
Query:   64 DWHNILGYINPSAIKHLE-KRGCSEITDATAASELWCETCKEYKSEVLSY-QRGGRTPKQSGEVVHTDLAGPF-QADITGHKYFQVFVDESSRDKRLYGLKTKNATADATAAYIDQMARE-GIHVQCISGDGASELWRSVKSQRMLANNGTRWRKSPPRTPQSNGIAERAIKQLMGAAKSQVAKAGLGDEYWFFAITDVAFKTGGMPHEYLGRETPYERLTGKSFNYDRLRTWGSKCYVHQDKQQRGIGSKFHPYAKRGMIMGHDRTSLCWYIWLPREAK 891
            DWHN  G++N  ++K +  K+    +       ++ C +C E K  V  + Q      K+  E++HTD+ GP  +  I G +YF  F+D+ SR K +Y LK+K+    A  ++     ++    ++ +  D   E + S   +  L  NG   + + P TPQ NG+AERA + L+  A+S +  +GLG+ +W  A+   A+       + L   TPYE  T +  N   L+ +G         ++R    KF P  K+ +++G+   S  + ++ P   K
Sbjct:  398 DWHNKFGHLNVQSLKEMHNKKLVHGLKLKNVPMKMQCTSCAESKICVNKFPQESKNRAKKLCEIIHTDICGPINKKSIGGSRYFATFIDDMSRYKCVYFLKSKDEIFSAFKSFKAMAEKQTNCKIKILRSDNGRE-YLSKNFENFLKENGIVRQLTVPYTPQQNGVAERANRTLVEMARSMIVHSGLGECFWAEAVATAAYLQNRSVTKSLANRTPYEAWTSRKPNVSHLKVFGQLAIAIDKTEKR----KFQPKGKKMVMVGYSDVSKAYRLYDPASKK 672          
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Match: A0A0V1GWK2_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1GWK2_9BILA)

HSP 1 Score: 120 bits (302), Expect = 2.890e-27
Identity = 83/273 (30.40%), Postives = 131/273 (47.99%), Query Frame = 1
Query:   67 WHNILGYINPSAIKHLEKRGCSEITDATAASELWCETCKEYKSEVLSYQRGGRTPKQS--GEVVHTDLAGPF-QADITGHKYFQVFVDESSRDKRLYGLKTKNATADATAAYIDQMARE-GIHVQCISGDGASELWRSVKSQRMLANNGTRWRKSPPRTPQSNGIAERAIKQLMGAAKSQVAKAGLGDEYWFFAITDVAFKTGGMPHEYLGRETPYERLTGKSFNYDRLRTWGSKCYVHQDKQQRGIGSKFHPYAKRGMIMGHDRTSLCWYIW 873
            WH  LG+I+   IK + +R   +   ATA  + +CE C  + S      +     +QS  GE++H D+ GPF    + G++YF  F DESS  +++Y +KTK+         + ++ +E G  VQ I  DG +E     +    L        KSPP TPQ NG+AER  + L+  A+S +    L    W  A+   A+    +P+      TPYE+  GK    + LR +G   YVH   Q R    KF   A++ + +G+   +  + ++
Sbjct:  208 WHQRLGHISVEKIKTMMQRNLVDGLRATAEEKFFCEGCV-FGSMTRKPHKEVTERRQSVPGEILHADVCGPFIHPSVGGNRYFICFKDESSGYRKVYFMKTKDEVLRCLKIALTEIKQETGRDVQRIRTDGGTEFVNR-EFDNFLTEKKIVHEKSPPYTPQCNGMAERENRTLVEKARSMLHARNLPRCLWAEAVHTAAYLLNHIPNRKETTNTPYEKWFGKRPTVEHLRIFGCDAYVHIPDQYR---KKFDRKARKVIFVGYGPNNKMFRVF 475          
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Match: A0A0V1NYN8_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella sp. T8 TaxID=92180 RepID=A0A0V1NYN8_9BILA)

HSP 1 Score: 118 bits (295), Expect = 1.060e-26
Identity = 81/274 (29.56%), Postives = 135/274 (49.27%), Query Frame = 1
Query:   67 WHNILGYINPSAIKHLEKRGCSEITDATAASELWCETCKEYKSEVLSYQRGGRTPKQS--GEVVHTDLAGPF-QADITGHKYFQVFVDESSRDKRLYGLKTKNATADATAAYIDQMARE-GIHVQCISGDGASELWRSVKSQRMLANNGTRWRKSPPRTPQSNGIAERAIKQLMGAAKSQVAKAGLGDEYWFFAITDVAFKTGGMPHEYLGRETPYERLTGKSFNYDRLRTWGSKCYVH-QDKQQRGIGSKFHPYAKRGMIMGHDRTSLCWYIW 873
            WH  LG+I+   IK + +R   +   ATA  + +CE C  + S      +     +QS  GE++H D+ GPF    + G++YF  F DESS  +++Y +KTK+         + ++ +E G  VQ I  D  +E   + +    L        K+PP TPQ NG+AER  + L+  A++ +    L    W  A+   A+    +P+     +TPYE   G+    + LR +G   YVH  D+ QR    KF P A++ + +G+  ++  + ++
Sbjct:   13 WHQRLGHISVEKIKTMMQRKLVDGLRATAEEKFFCEGCV-FGSMTRKPHKEVTERRQSVPGEIIHADVCGPFIHPSVGGNRYFICFKDESSGYRKVYFMKTKDEVLRCLKTVLTEIKQETGRDVQRIRTDRGTEF-ANRELDNFLTEKKIVHEKTPPYTPQCNGMAERENRTLVEKARAMLHTRNLPRCLWAEAVHTAAYLLNRIPNRKEITKTPYEEWFGRRPTVEHLRIFGCDAYVHIPDQHQR----KFDPKARKVIFVGYGPSNKMFRVF 280          
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Match: UPI001F01248C (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium pseudokroppenstedtii TaxID=2804917 RepID=UPI001F01248C)

HSP 1 Score: 117 bits (293), Expect = 1.510e-26
Identity = 80/278 (28.78%), Postives = 131/278 (47.12%), Query Frame = 1
Query:   67 WHNILGYINPSAIKHLEKRGCSEITDATAASELWCETCKEYKSEVLSYQRGGRTPK-QSGEVVHTDLAGPFQAD-ITGHKYFQVFVDESSRDKRLYGLKTKNATADATAAYIDQMARE-GIHVQCISGDGASELWRSVKSQRMLANNGTRWRKSPPRTPQSNGIAERAIKQLMGAAKSQVAKAGLGDEYWFFAITDVAFKTGGMPHEYLGRETPYERLTGKSFNYDRLRTWGSKCYVHQDKQQRGIGSKFHPYAKRGMIMGHDRTSLCWYIWLPREAK 891
            WH  L +I+   +  L K+    ++D   A    CE C   K   +S++    + K +  E+VH+DL GP +   + G  YF  F+D+ SR   ++ LKTK+        +   + RE G  ++CI  D   E            + G R +K+PP+TPQ NG+AER  + LM   +  +++A L + +W  A+   A      P   L  + P +   GK  +YD LR +G K +VH  K +R   SK     ++ + +G+      + ++ P E K
Sbjct:   34 WHKRLSHISEKGLNVLAKKKL--LSDCKGAKLEKCEHCLAGKQNRVSFKSNPPSRKTELLELVHSDLCGPMKTKTLGGALYFVTFIDDCSRKLWVFVLKTKDQVLGVFKQFQASVERETGKKLKCIRTDNGGEYCGPFDEY--CKHQGIRHQKTPPKTPQLNGLAERMNRTLMERVRCLLSEAKLPNSFWGEALLTAAHVINLSPTVALQGDVPNKVWYGKDVSYDHLRVFGCKAFVHVPKDER---SKLDAKTRQCIFVGYGLDEFGYRLYDPIEKK 304          
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Match: UPI001EFFA561 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001EFFA561)

HSP 1 Score: 119 bits (297), Expect = 3.130e-26
Identity = 81/278 (29.14%), Postives = 131/278 (47.12%), Query Frame = 1
Query:   67 WHNILGYINPSAIKHLEKRGCSEITDATAASELWCETCKEYKSEVLSYQRGGRTPK-QSGEVVHTDLAGPFQAD-ITGHKYFQVFVDESSRDKRLYGLKTKNATADATAAYIDQMARE-GIHVQCISGDGASELWRSVKSQRMLANNGTRWRKSPPRTPQSNGIAERAIKQLMGAAKSQVAKAGLGDEYWFFAITDVAFKTGGMPHEYLGRETPYERLTGKSFNYDRLRTWGSKCYVHQDKQQRGIGSKFHPYAKRGMIMGHDRTSLCWYIWLPREAK 891
            WH  L +I+   +  L K+    ++D   A    CE C   K   +S++    + K +  E+VH+DL GP +   + G  YF  F+D+ SR   +Y LKTK+        +   + RE G  ++CI  D   E            + G R +K+PP+TPQ NG+AER  + LM   +  +++A L + +W  A+   A      P   L  + P +   GK  +YD LR +G K +VH  K +R   SK     ++ + +G+      + ++ P E K
Sbjct:  188 WHKRLSHISEKGLNVLAKKKL--LSDCKGAKLEKCEHCLAGKQNRVSFKSNPPSRKTELLELVHSDLCGPMKTKTLGGALYFVTFIDDCSRKLWVYVLKTKDQVLGVFKQFQASVERETGKKLKCIRTDNGGEYCGPFDEY--CKHQGIRHQKTPPKTPQLNGLAERMNRTLMERVRCLLSEAKLPNSFWGEALLTAAHVINLSPTVALQGDVPNKVWYGKDVSYDHLRVFGCKAFVHVPKDER---SKLDAKTRQCIFVGYGLDEFGYRLYDPIEKK 458          
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Match: A0A0V0REQ0_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=9 Tax=Trichinella TaxID=6333 RepID=A0A0V0REQ0_9BILA)

HSP 1 Score: 118 bits (295), Expect = 5.570e-26
Identity = 80/273 (29.30%), Postives = 133/273 (48.72%), Query Frame = 1
Query:   67 WHNILGYINPSAIKHLEKRGCSEITDATAASELWCETCKEYKSEVLSYQRGGRTPKQS--GEVVHTDLAGPF-QADITGHKYFQVFVDESSRDKRLYGLKTKNATADATAAYIDQMARE-GIHVQCISGDGASELWRSVKSQRMLANNGTRWRKSPPRTPQSNGIAERAIKQLMGAAKSQVAKAGLGDEYWFFAITDVAFKTGGMPHEYLGRETPYERLTGKSFNYDRLRTWGSKCYVHQDKQQRGIGSKFHPYAKRGMIMGHDRTSLCWYIW 873
            WH  LG+I+   IK + +R   +   ATA  + +CE C  + S      +     +QS  GE++H D+ GPF    + G++YF  F DESS  +++Y +KTK+         + ++ +E G  VQ I  D  +E   + +    L        K+PP TPQ NG+AER  + L+  A++ +    L    W  A+   A+    +P+     +TPYE   G+    + LR +G   YVH   Q R    KF P A++ + +G+  ++  + ++
Sbjct:  106 WHQRLGHISVEKIKTMMQRKLVDGLRATAEEKFFCEGCV-FGSMTRKPHKEVTERRQSVPGEIIHADVCGPFIHPSVGGNRYFICFKDESSGYRKVYFMKTKDEVLRCLKTALTEIKQETGRDVQRIRTDRGTEF-ANRELDNFLTEKKIVHEKTPPYTPQCNGMAERENRTLVEKARAMLHTRNLPRCLWAEAVHTAAYLLNRIPNRKEITKTPYEEWFGRRPTVEHLRIFGCDAYVHIPDQHR---RKFDPKARKVIFVGYGPSNKMFRVF 373          
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Match: A0A0V1A3R1_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V1A3R1_9BILA)

HSP 1 Score: 117 bits (294), Expect = 7.700e-26
Identity = 80/273 (29.30%), Postives = 133/273 (48.72%), Query Frame = 1
Query:   67 WHNILGYINPSAIKHLEKRGCSEITDATAASELWCETCKEYKSEVLSYQRGGRTPKQS--GEVVHTDLAGPF-QADITGHKYFQVFVDESSRDKRLYGLKTKNATADATAAYIDQMARE-GIHVQCISGDGASELWRSVKSQRMLANNGTRWRKSPPRTPQSNGIAERAIKQLMGAAKSQVAKAGLGDEYWFFAITDVAFKTGGMPHEYLGRETPYERLTGKSFNYDRLRTWGSKCYVHQDKQQRGIGSKFHPYAKRGMIMGHDRTSLCWYIW 873
            WH  LG+I+   IK + +R   +   ATA  + +CE C  + S      +     +QS  GE++H D+ GPF    + G++YF  F DESS  +++Y +KTK+         + ++ +E G  VQ I  D  +E   + +    L        K+PP TPQ NG+AER  + L+  A++ +    L    W  A+   A+    +P+     +TPYE   G+    + LR +G   YVH   Q R    KF P A++ + +G+  ++  + ++
Sbjct:  707 WHQRLGHISVEKIKTMMQRKLVDGLRATAEEKFFCEGCV-FGSMTRKPHKEVTERRQSVPGEIIHADVCGPFIHPSVGGNRYFICFKDESSGYRKVYFMKTKDEVLRCLKIALTEIKQETGRDVQRIRTDRGTEF-ANRELDNFLTEKKIVHEKTPPYTPQCNGMAERENRTLVEKARAMLHTRNLPRCLWAEAVHTAAYLLNRIPNRKEITKTPYEEWFGRRPTVEHLRIFGCDAYVHIPDQHR---RKFDPKARKVIFVGYGPSNKMFRVF 974          
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Match: A0A0V1NGU6_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella sp. T8 TaxID=92180 RepID=A0A0V1NGU6_9BILA)

HSP 1 Score: 114 bits (284), Expect = 8.960e-26
Identity = 79/263 (30.04%), Postives = 128/263 (48.67%), Query Frame = 1
Query:   67 WHNILGYINPSAIKHLEKRGCSEITDATAASELWCETCKEYKSEVLSYQRGGRTPKQS--GEVVHTDLAGPF-QADITGHKYFQVFVDESSRDKRLYGLKTKNATADATAAYIDQMARE-GIHVQCISGDGASELWRSVKSQRMLANNGTRWRKSPPRTPQSNGIAERAIKQLMGAAKSQVAKAGLGDEYWFFAITDVAFKTGGMPHEYLGRETPYERLTGKSFNYDRLRTWGSKCYVHQDKQQRGIGSKFHPYAKRGMIMGH 843
            WH  LG+I+   IK + +R   +   ATA  + +CE C  + S      +     +QS  GE++H D+ GPF    + G++YF  F DESS  +++Y +KTK+         + ++ +E G  VQ I  +  +E   + +    L        K+PP TPQ NG+AER  + L+  A++ +    L    W  A+   A+    +P+     +TPYE   G+    + LR +G   YVH   Q R    KF P A++ + +G+
Sbjct:   16 WHQRLGHISVEKIKTVMQRKFVDGLRATAEEKFFCEGCV-FGSMTRKLHKEVTERRQSVPGEIIHADVCGPFIHPSVGGNRYFICFKDESSGYRKVYFMKTKDEVLRCLKIALTEIKQETGRDVQRIRTNRGTEF-ANRELDNFLTEKKIVHEKTPPYTPQCNGMAERENRTLVEKARAMLHTRNLPRCLWAEAVHTAAYLLKRIPNRKEITKTPYEEWFGRRPTVEHLRIFGCDAYVHIPDQHR---RKFDPKARKVIFVGY 273          
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Match: A0A0V1CBZ4_TRIBR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella britovi TaxID=45882 RepID=A0A0V1CBZ4_TRIBR)

HSP 1 Score: 117 bits (293), Expect = 9.160e-26
Identity = 80/273 (29.30%), Postives = 133/273 (48.72%), Query Frame = 1
Query:   67 WHNILGYINPSAIKHLEKRGCSEITDATAASELWCETCKEYKSEVLSYQRGGRTPKQS--GEVVHTDLAGPF-QADITGHKYFQVFVDESSRDKRLYGLKTKNATADATAAYIDQMAREGIH-VQCISGDGASELWRSVKSQRMLANNGTRWRKSPPRTPQSNGIAERAIKQLMGAAKSQVAKAGLGDEYWFFAITDVAFKTGGMPHEYLGRETPYERLTGKSFNYDRLRTWGSKCYVHQDKQQRGIGSKFHPYAKRGMIMGHDRTSLCWYIW 873
            WH  LG+I+   IK + +R   +   ATA  + +CE C  + S      +     +QS  GE++H D+ GPF  + + G++YF  F DESS  + +Y +KTK+         + ++ +E    VQ I  D  +E   + +    L        K+PP TPQ NG+AER  K L+  A++ +    L    W  A+   A+    +P+     +TPYE   G+    + LR +G   YVH  +Q R    KF P A++ + +G+  ++  + ++
Sbjct:   16 WHQRLGHISVEKIKTMMQRKLVDGLRATAEEKFFCEGCV-FGSMTWKPHKEVTERRQSVPGEIIHADVCGPFIHSSVGGNRYFICFKDESSGYRNVYFMKTKDEVLRCLKTALTEIKQETRRDVQRIRTDRGTEF-ANRELDNFLTEKKIVHEKTPPYTPQCNGMAERENKTLVEKARAMLHTRNLPRCLWAEAVHTAAYLLNRIPNRKEITKTPYEEWFGRRPTVEHLRIFGCDAYVHIPEQHR---RKFDPKARKVIFVGYGPSNKMFRVF 283          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11056.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A085N6C0_9BILA1.150e-3030.66Uncharacterized protein n=1 Tax=Trichuris suis Tax... [more]
W8ADM5_CERCA1.180e-2927.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1GWK2_9BILA2.890e-2730.40Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1NYN8_9BILA1.060e-2629.56Retrovirus-related Pol polyprotein from transposon... [more]
UPI001F01248C1.510e-2628.78DDE-type integrase/transposase/recombinase n=1 Tax... [more]
UPI001EFFA5613.130e-2629.14DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A0V0REQ0_9BILA5.570e-2629.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1A3R1_9BILA7.700e-2629.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1NGU6_9BILA8.960e-2630.04Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1CBZ4_TRIBR9.160e-2629.30Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11056contigC-tenellus_contig11056:4460..5353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog8128.ENSONIP00000026676
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size894
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.73e-30
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria,48JS3@7711|Chordata,49GTT@7742|Vertebrata
DescriptionPfam:UBN2_2
Cds size894
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.8110986-CDS-C-tenellus_contig11056:4459..53531680789160.8110986-CDS-C-tenellus_contig11056:4459..5353Choristocarpus tenellus KU2346CDSC-tenellus_contig11056 4460..5353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11056.1.1prot_C-tenellus_contig11056.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11056 4460..5353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11056.1.1

>prot_C-tenellus_contig11056.1.1 ID=prot_C-tenellus_contig11056.1.1|Name=mRNA_C-tenellus_contig11056.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=298bp
MEQESRASAARANQKQRLTLNDWHNILGYINPSAIKHLEKRGCSEITDAT
AASELWCETCKEYKSEVLSYQRGGRTPKQSGEVVHTDLAGPFQADITGHK
YFQVFVDESSRDKRLYGLKTKNATADATAAYIDQMAREGIHVQCISGDGA
SELWRSVKSQRMLANNGTRWRKSPPRTPQSNGIAERAIKQLMGAAKSQVA
KAGLGDEYWFFAITDVAFKTGGMPHEYLGRETPYERLTGKSFNYDRLRTW
GSKCYVHQDKQQRGIGSKFHPYAKRGMIMGHDRTSLCWYIWLPREAK*
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mRNA from alignment at C-tenellus_contig11056:4460..5353+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11056.1.1 ID=mRNA_C-tenellus_contig11056.1.1|Name=mRNA_C-tenellus_contig11056.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=894bp|location=Sequence derived from alignment at C-tenellus_contig11056:4460..5353+ (Choristocarpus tenellus KU2346)
ATGGAACAAGAATCGAGAGCCAGCGCTGCACGAGCCAACCAAAAGCAGAG GCTGACATTAAACGACTGGCACAACATATTGGGATACATCAACCCATCAG CAATCAAGCATCTCGAGAAACGAGGATGTTCGGAGATCACCGACGCTACT GCGGCGTCAGAACTGTGGTGCGAGACCTGCAAGGAATACAAATCCGAGGT CCTAAGCTATCAACGGGGTGGCAGGACCCCCAAGCAGTCCGGTGAGGTTG TGCACACGGATTTGGCGGGACCTTTTCAAGCAGATATCACTGGTCATAAA TATTTTCAGGTGTTCGTCGATGAGAGCAGCCGAGACAAGAGGCTTTATGG ATTGAAAACAAAAAATGCAACGGCGGACGCAACTGCTGCATATATCGACC AGATGGCCAGGGAAGGTATACACGTCCAATGCATCAGTGGGGATGGTGCT AGCGAGCTTTGGAGATCGGTGAAGTCCCAAAGGATGCTGGCGAACAATGG TACCCGATGGAGGAAATCTCCACCGAGAACACCACAAAGCAACGGGATCG CCGAAAGGGCTATAAAGCAACTCATGGGGGCAGCAAAGAGTCAAGTGGCA AAAGCTGGGCTGGGTGACGAGTACTGGTTCTTTGCCATCACGGATGTTGC CTTCAAAACTGGAGGCATGCCACACGAATACCTCGGCAGAGAGACGCCAT ACGAGCGTCTAACAGGTAAATCTTTCAACTATGATAGACTTCGGACCTGG GGGAGCAAGTGCTATGTTCACCAAGACAAGCAGCAGAGGGGAATCGGTTC AAAGTTTCACCCATATGCCAAGCGGGGTATGATCATGGGACACGACCGTA CATCATTGTGTTGGTACATCTGGCTTCCTCGAGAGGCCAAGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig11056:4460..5353+

>mRNA_C-tenellus_contig11056.1.1 ID=mRNA_C-tenellus_contig11056.1.1|Name=mRNA_C-tenellus_contig11056.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=894bp|location=Sequence derived from alignment at C-tenellus_contig11056:4460..5353+ (Choristocarpus tenellus KU2346)
ATGGAACAAGAATCGAGAGCCAGCGCTGCACGAGCCAACCAAAAGCAGAG
GCTGACATTAAACGACTGGCACAACATATTGGGATACATCAACCCATCAG
CAATCAAGCATCTCGAGAAACGAGGATGTTCGGAGATCACCGACGCTACT
GCGGCGTCAGAACTGTGGTGCGAGACCTGCAAGGAATACAAATCCGAGGT
CCTAAGCTATCAACGGGGTGGCAGGACCCCCAAGCAGTCCGGTGAGGTTG
TGCACACGGATTTGGCGGGACCTTTTCAAGCAGATATCACTGGTCATAAA
TATTTTCAGGTGTTCGTCGATGAGAGCAGCCGAGACAAGAGGCTTTATGG
ATTGAAAACAAAAAATGCAACGGCGGACGCAACTGCTGCATATATCGACC
AGATGGCCAGGGAAGGTATACACGTCCAATGCATCAGTGGGGATGGTGCT
AGCGAGCTTTGGAGATCGGTGAAGTCCCAAAGGATGCTGGCGAACAATGG
TACCCGATGGAGGAAATCTCCACCGAGAACACCACAAAGCAACGGGATCG
CCGAAAGGGCTATAAAGCAACTCATGGGGGCAGCAAAGAGTCAAGTGGCA
AAAGCTGGGCTGGGTGACGAGTACTGGTTCTTTGCCATCACGGATGTTGC
CTTCAAAACTGGAGGCATGCCACACGAATACCTCGGCAGAGAGACGCCAT
ACGAGCGTCTAACAGGTAAATCTTTCAACTATGATAGACTTCGGACCTGG
GGGAGCAAGTGCTATGTTCACCAAGACAAGCAGCAGAGGGGAATCGGTTC
AAAGTTTCACCCATATGCCAAGCGGGGTATGATCATGGGACACGACCGTA
CATCATTGTGTTGGTACATCTGGCTTCCTCGAGAGGCCAAGTGA
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