mRNA_C-tenellus_contig11051.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11051.1.1
Unique NamemRNA_C-tenellus_contig11051.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11051.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11051contigC-tenellus_contig11051:1928..5289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2262
Hectar predicted targeting categorymitochondrion
Exons3
Cds size1884
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.737123-UTR-C-tenellus_contig11051:1927..19901680789160.737123-UTR-C-tenellus_contig11051:1927..1990Choristocarpus tenellus KU2346UTRC-tenellus_contig11051 1928..1990 -
1680789160.7786303-UTR-C-tenellus_contig11051:4974..52891680789160.7786303-UTR-C-tenellus_contig11051:4974..5289Choristocarpus tenellus KU2346UTRC-tenellus_contig11051 4975..5289 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.751111-CDS-C-tenellus_contig11051:1990..27891680789160.751111-CDS-C-tenellus_contig11051:1990..2789Choristocarpus tenellus KU2346CDSC-tenellus_contig11051 1991..2789 -
1680789160.7621355-CDS-C-tenellus_contig11051:3676..38081680789160.7621355-CDS-C-tenellus_contig11051:3676..3808Choristocarpus tenellus KU2346CDSC-tenellus_contig11051 3677..3808 -
1680789160.7702618-CDS-C-tenellus_contig11051:4021..49741680789160.7702618-CDS-C-tenellus_contig11051:4021..4974Choristocarpus tenellus KU2346CDSC-tenellus_contig11051 4022..4974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11051.1.1prot_C-tenellus_contig11051.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11051 1991..4974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11051.1.1

>prot_C-tenellus_contig11051.1.1 ID=prot_C-tenellus_contig11051.1.1|Name=mRNA_C-tenellus_contig11051.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=628bp
MLSPIILQLCRSSPSTRRSMVPLSTGAGGTDGQHTFAWLSCLDSTSSPLG
MRGEHKANQGPLGKCHDNGEASPTTLCFGSVDWDLEGRWSRHPVGQTPAH
VLFVPDGRFIIVACEGSSVGCFYPRGQESERRNEKDTHSNLCNRGSPSLR
VFNADSMEEVWRGLVHCNTSDITGLALLEPPVVKRCHPRGSMNRSCDVVG
GGVVAMACTKANDARYGQVSVDPWENVEVDPPVSCVLAFEIARCHRGGGT
GSQPVETSQGCGSFGASHKSGTSLEPLGAGDEISGACFCLKTIAKRFVAA
AVNDRILVMGWAEKEGLKSGQSMGLCLTASHPTPHQGCITALATCGNFVA
IAELLHSVAVYRFDEDEKTLFLLGIHRSGRLVSTCLTLVPRWSHQATQPF
PDIVATDQSTGTMAVLSCSLPVEEPNQGNLGPTGTVHRMCVAALWQNPST
ITYLGNIGGCVPSGFILGTSTGVIWGACFITPEAFHALAGLQESWSRCVV
KSNTEFHLVNRCNDGKGIIKGHGKESAVETSSGDKRENATTSSAQQGKNQ
YDSRANHNKNNTLIELPGVSSLSVESPGSTLPVQGFGCINGSFLKGFIGG
APGLCVHNRSMTDDDEVHSVMHALFGS*
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mRNA from alignment at C-tenellus_contig11051:1928..5289-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11051.1.1 ID=mRNA_C-tenellus_contig11051.1.1|Name=mRNA_C-tenellus_contig11051.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3362bp|location=Sequence derived from alignment at C-tenellus_contig11051:1928..5289- (Choristocarpus tenellus KU2346)
AGATACTTTGAGCCAACAGTTTCCTTTTTTACAGCACTTTTTTCGAAGGT
GTGATAGCCGCAATTGTTGTGGCAATCAGCCACACTAGCACACCAAGGTC
AAGCTCACAAGCCTCAGAATTGTGATCCTAAATTCAGTCAGAAACCACAA
GCATTGACATACTCTGAGATTTTATTATAGTGCAGGAGCCAGATGCTTTC
TTAAAACAGTACAGATTGGGGTACATAGAAGATGTACATGCTTTGTTTTA
ACCATCATCAGCAGGGTGGGTGGTTCCTCATTTGGTCTTGAAGGTTTTTA
TGCATCTCGCGACCCATGCTCTCTCCCATCATCCTTCAGCTATGCCGCTC
CAGCCCTTCAACTCGTCGCAGCATGGTTCCTCTTAGTACTGGAGCTGGAG
GTACAGATGGTCAGCACACCTTTGCTTGGCTGTCTTGTCTCGACTCCACT
AGCTCTCCTCTGGGCATGCGAGGAGAACACAAAGCAAACCAAGGTCCGCT
TGGCAAGTGCCACGATAATGGAGAAGCCTCTCCGACGACCCTGTGCTTTG
GTTCAGTGGATTGGGATCTAGAAGGGCGCTGGTCCCGACATCCTGTCGGT
CAAACTCCTGCCCATGTACTTTTTGTCCCAGATGGCAGGTTCATAATTGT
GGCATGTGAGGGTTCAAGTGTTGGTTGCTTTTACCCAAGGGGGCAGGAGT
CAGAGAGAAGAAACGAGAAGGACACACATTCAAACCTGTGCAACCGTGGT
TCACCAAGTCTCAGAGTGTTCAATGCAGACTCTATGGAAGAGGTCTGGCG
AGGCTTGGTCCATTGTAACACCTCTGACATAACCGGGCTTGCTCTTCTGG
AACCCCCTGTTGTGAAGCGCTGTCACCCACGAGGTAGCATGAATAGGTCT
TGTGATGTTGTGGGAGGAGGAGTGGTGGCAATGGCATGCACCAAAGCGAA
TGACGCCCGTTATGGACAAGTCTCTGTCGATCCATGGGAAAACGTTGAAG
TAGATCCTCCAGTGTCATGCGTGCTGGCCTTTGAGATTGCAAGGTGCCAT
CGTGGGGGTGGTACAGGCTCACAACCAGTAGAGACATCTCAAGGCTGTGG
AAGTTTTGGGGCATCTCACAAGAGTGGGACATCTCTGGAGCCACTGGGGG
CAGGGGATGAGATTTCTGGGGCGTGTTTCTGCCTAAAGACAATAGCCAAG
AGGTTTGTTGCGGCTGCAGTCAACGACAGAATTCTCGTCATGGGATGGGC
AGAAAAGGAGGGACTAAAGTGAGTAGGTATGCCGGTAGAACGTAAGTAAT
CCAATGCAATATGCAGCAAATCTTTGTATTATGTTTTTGCAAACAAGCCA
AGCAACAACAACCGGTTTTCGGAGTATCAACTTCGTATGATCAAAAAAAA
ATTAATGCTGTAGTACATTTTCCTCCTTGTTGTGTCGTATAATACGCCTT
GCATGCTCCGCCTGTGCAATGTGCACTACAGGTCAGGTCAATCCATGGGG
CTATGTTTGACGGCATCACACCCAACACCCCACCAAGGGTGCATCACTGC
CTTGGCCACCTGTGGCAATTTTGTGGCTATAGCAGAGTTGCTGCATTCAG
TAGCAGTGTATAGGTAAGTCTTTTGAGCAATGCCAAGGATGATAACGAGA
AGAGTAAATGCAAGAGTAAGGATGAGGAAACACTACTGCACAAAAACCAA
CACAGAACAGACAGTATAGCCTGTGCGATGTAGGAACCGAAGATATTATT
TTGCCCTGAAAAATCCTCTACTTTCCTCTATACTTTGCATCATCGCTTTG
AAGGGATGGTGGATGCTATAATAGTGGGGTTTGTGCATCCATGTGGACGA
ATCAGTCATCCCTCAAATTAAGAGATTATTTCGCAACCTAGTCATATGCC
TTGATGTTTCCTATTCATAGTAATAGTCTTCCCCCCACTTCGTAACAAGA
GCATCTCAGTAACACCAATTTGAGGGTTGTTTCCCTTGTTGTCAAAGTGA
ACTAATGTGACTTGGATGTAACCCGTTAACTGAGTGATTGTATTCATAGC
CTACCCATTTCGAATGCCCTGGACAAGACAATGAACAAGGTGGGGACAAG
AGACCACTCTAGCCAATCCATATCATCCAGTCACCCCTAACCCTAAACAA
AATTCTTCTTTTAAGTAAAATCCCACCACGCATCATATCCCGTGGCAGGC
CAGTTTCCTGAGTCGCAATTGCACAACAGAAAGTATTCAACCACCAACCT
CGACACTATTCATGGGCCCACATTCCTTTCCTACATCCTAAACAAGAAAT
GGGAACTGCCATGACTTTATGCAAAGCCATAGTAAGAGTATATATATACA
TACATATATATATATATATATATATGTATGTATCTTTGGCCTCACCACGT
CCTTATCCTCGCAAACTCGCTCCCTCTTTTTTCTACCACATTTGATTATC
CATCTTCTCATCCTCTGTCACGGTGGTGTGCGCTCGGCCCGGCAAAGAAG
ATTTGATGAGGACGAGAAAACCCTGTTTCTCCTTGGGATACACCGATCAG
GGCGTCTAGTCTCCACCTGTCTGACTCTAGTCCCACGTTGGAGCCACCAG
GCAACACAACCATTTCCAGACATAGTTGCCACGGATCAATCAACTGGGAC
AATGGCAGTGCTCTCATGCTCATTGCCAGTGGAAGAACCCAATCAGGGGA
ACTTGGGTCCAACAGGTACAGTACACAGGATGTGCGTTGCTGCCCTGTGG
CAAAATCCGAGCACTATCACTTACCTGGGCAACATAGGTGGATGTGTACC
CTCAGGTTTTATCCTGGGCACATCCACCGGCGTGATATGGGGCGCCTGTT
TCATCACCCCAGAGGCTTTTCATGCTTTGGCAGGGCTACAAGAATCTTGG
TCCCGTTGTGTTGTCAAATCCAATACTGAGTTTCATTTGGTCAACAGGTG
CAATGATGGCAAAGGTATCATTAAAGGACATGGCAAAGAAAGTGCAGTGG
AGACCAGCAGTGGAGATAAAAGAGAGAATGCCACGACTAGTAGTGCACAG
CAGGGAAAAAATCAGTATGATAGTAGAGCCAACCACAACAAAAATAACAC
TCTCATCGAATTGCCTGGTGTGTCCTCATTGTCAGTGGAATCCCCTGGGT
CCACACTACCAGTTCAGGGATTTGGATGCATCAATGGGTCCTTCCTCAAG
GGATTTATTGGGGGAGCGCCTGGACTGTGTGTGCATAATAGGTCCATGAC
TGATGATGATGAAGTACATTCAGTAATGCATGCTCTGTTCGGTTCTTGAA
AGAGCAGAGTGATGGTTTTGATCTCCTGATCATCATCATTCTCAAGTTTC
TCTCATTCGAGC
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Coding sequence (CDS) from alignment at C-tenellus_contig11051:1928..5289-

>mRNA_C-tenellus_contig11051.1.1 ID=mRNA_C-tenellus_contig11051.1.1|Name=mRNA_C-tenellus_contig11051.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1884bp|location=Sequence derived from alignment at C-tenellus_contig11051:1928..5289- (Choristocarpus tenellus KU2346)
ATGCTCTCTCCCATCATCCTTCAGCTATGCCGCTCCAGCCCTTCAACTCG
TCGCAGCATGGTTCCTCTTAGTACTGGAGCTGGAGGTACAGATGGTCAGC
ACACCTTTGCTTGGCTGTCTTGTCTCGACTCCACTAGCTCTCCTCTGGGC
ATGCGAGGAGAACACAAAGCAAACCAAGGTCCGCTTGGCAAGTGCCACGA
TAATGGAGAAGCCTCTCCGACGACCCTGTGCTTTGGTTCAGTGGATTGGG
ATCTAGAAGGGCGCTGGTCCCGACATCCTGTCGGTCAAACTCCTGCCCAT
GTACTTTTTGTCCCAGATGGCAGGTTCATAATTGTGGCATGTGAGGGTTC
AAGTGTTGGTTGCTTTTACCCAAGGGGGCAGGAGTCAGAGAGAAGAAACG
AGAAGGACACACATTCAAACCTGTGCAACCGTGGTTCACCAAGTCTCAGA
GTGTTCAATGCAGACTCTATGGAAGAGGTCTGGCGAGGCTTGGTCCATTG
TAACACCTCTGACATAACCGGGCTTGCTCTTCTGGAACCCCCTGTTGTGA
AGCGCTGTCACCCACGAGGTAGCATGAATAGGTCTTGTGATGTTGTGGGA
GGAGGAGTGGTGGCAATGGCATGCACCAAAGCGAATGACGCCCGTTATGG
ACAAGTCTCTGTCGATCCATGGGAAAACGTTGAAGTAGATCCTCCAGTGT
CATGCGTGCTGGCCTTTGAGATTGCAAGGTGCCATCGTGGGGGTGGTACA
GGCTCACAACCAGTAGAGACATCTCAAGGCTGTGGAAGTTTTGGGGCATC
TCACAAGAGTGGGACATCTCTGGAGCCACTGGGGGCAGGGGATGAGATTT
CTGGGGCGTGTTTCTGCCTAAAGACAATAGCCAAGAGGTTTGTTGCGGCT
GCAGTCAACGACAGAATTCTCGTCATGGGATGGGCAGAAAAGGAGGGACT
AAAGTCAGGTCAATCCATGGGGCTATGTTTGACGGCATCACACCCAACAC
CCCACCAAGGGTGCATCACTGCCTTGGCCACCTGTGGCAATTTTGTGGCT
ATAGCAGAGTTGCTGCATTCAGTAGCAGTGTATAGATTTGATGAGGACGA
GAAAACCCTGTTTCTCCTTGGGATACACCGATCAGGGCGTCTAGTCTCCA
CCTGTCTGACTCTAGTCCCACGTTGGAGCCACCAGGCAACACAACCATTT
CCAGACATAGTTGCCACGGATCAATCAACTGGGACAATGGCAGTGCTCTC
ATGCTCATTGCCAGTGGAAGAACCCAATCAGGGGAACTTGGGTCCAACAG
GTACAGTACACAGGATGTGCGTTGCTGCCCTGTGGCAAAATCCGAGCACT
ATCACTTACCTGGGCAACATAGGTGGATGTGTACCCTCAGGTTTTATCCT
GGGCACATCCACCGGCGTGATATGGGGCGCCTGTTTCATCACCCCAGAGG
CTTTTCATGCTTTGGCAGGGCTACAAGAATCTTGGTCCCGTTGTGTTGTC
AAATCCAATACTGAGTTTCATTTGGTCAACAGGTGCAATGATGGCAAAGG
TATCATTAAAGGACATGGCAAAGAAAGTGCAGTGGAGACCAGCAGTGGAG
ATAAAAGAGAGAATGCCACGACTAGTAGTGCACAGCAGGGAAAAAATCAG
TATGATAGTAGAGCCAACCACAACAAAAATAACACTCTCATCGAATTGCC
TGGTGTGTCCTCATTGTCAGTGGAATCCCCTGGGTCCACACTACCAGTTC
AGGGATTTGGATGCATCAATGGGTCCTTCCTCAAGGGATTTATTGGGGGA
GCGCCTGGACTGTGTGTGCATAATAGGTCCATGACTGATGATGATGAAGT
ACATTCAGTAATGCATGCTCTGTTCGGTTCTTGA
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