mRNA_C-tenellus_contig11021.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE) HSP 1 Score: 233 bits (595), Expect = 4.230e-71 Identity = 121/282 (42.91%), Postives = 181/282 (64.18%), Query Frame = 1 Query: 22 EVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAADKDWELKHWDAKQAFIQANISEKIFVRLCDGCGISSGMILRLVKALYGTKQASREFNNRLVHVLEQCGLEQCRADPYVLRYIRDGVVCAMIAPHVDDLLVAGKIDVSIWICSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTIGQTRYIKSVCQRFGMDGAKKRSVPHDLSRTLD-KSENHPSVDGNAPYREAVGSLMWASVMTRLDIANAIREVAKYSSNPNVTHWRAVRCILAYL 864 ++V+ KARL AKGF+Q G+DY +TF+PT + AS ++V+ LA + EL HWD +QAF+Q+ + ++F++L GCG SG ++RL K+LYG KQASR F RLV L++ G EQ +DP VLR++ V M+A HVDD+L AG ++ + + + + + G++ +++GC RDR A T+ + Q YI+SV +RF + + S+P S T D +S G+ P+RE VGSLMW + TR DI+NA+R VA++S P +HW+A + IL YL Sbjct: 42 KIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTTSLAEVVVAALGDFLPTKSLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNV--CRTSSIP--ASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYL 319
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 244 bits (623), Expect = 8.020e-70 Identity = 122/287 (42.51%), Postives = 187/287 (65.16%), Query Frame = 1 Query: 4 KTNKFGEVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAADKDWELKHWDAKQAFIQANISEKIFVRLCDGCGISSGMILRLVKALYGTKQASREFNNRLVHVLEQCGLEQCRADPYVLRYIRDGVVCAMIAPHVDDLLVAGKIDVSIWICSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTIGQTRYIKSVCQRFGMDGAKKRSVPHDLSRTLDKSENHPSVDGNAPYREAVGSLMWASVMTRLDIANAIREVAKYSSNPNVTHWRAVRCILAYL 864 K ++ G++V+ KARL AKGF+Q G+DY +TF+PT + AS ++V+ LA + EL HWD +QAF+Q+ + ++F+++ GCG S ++RL K+LYG KQASR F RLV L++ G EQ +DP VLR++ V M+A HVDD+L AG ++ + + + + ++ G++++++GCE RDR A T+ I Q YI+SV +RF + + S+P L+ D+S G+ P+RE VGSLMW + TR DI+NA+R VA++S P +HW+A + IL YL Sbjct: 943 KADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNI--VRTSSIPASLNND-DRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYL 1226
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE) HSP 1 Score: 241 bits (615), Expect = 6.570e-69 Identity = 121/287 (42.16%), Postives = 186/287 (64.81%), Query Frame = 1 Query: 4 KTNKFGEVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAADKDWELKHWDAKQAFIQANISEKIFVRLCDGCGISSGMILRLVKALYGTKQASREFNNRLVHVLEQCGLEQCRADPYVLRYIRDGVVCAMIAPHVDDLLVAGKIDVSIWICSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTIGQTRYIKSVCQRFGMDGAKKRSVPHDLSRTLDKSENHPSVDGNAPYREAVGSLMWASVMTRLDIANAIREVAKYSSNPNVTHWRAVRCILAYL 864 K ++ G++V+ KARL AKGF+Q G+DY +TF+PT + AS ++V+ LA + EL HWD +QAF+Q+ + ++F+++ GCG S ++RL K+LYG KQASR F RLV L++ G EQ +DP VL ++ V M+A HVDD+L AG ++ + + + + ++ G++++++GCE RDR A T+ I Q YI+SV +RF + + S+P L+ D+S G+ P+RE VGSLMW + TR DI+NA+R VA++S P +HW+A + IL YL Sbjct: 733 KADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLCFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNI--VRTSSIPASLNND-DRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYL 1016
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 238 bits (606), Expect = 2.880e-68 Identity = 123/288 (42.71%), Postives = 186/288 (64.58%), Query Frame = 1 Query: 4 KTNKFGEVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAADKDWELKHWDAKQAFIQANISEKIFVRLCDGCGISSGMILRLVKALYGTKQASREFNNRLVHVLEQCGLEQCRADPYVLRYIRDGVVCAMIAPHVDDLLVAGKIDVSIWICSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTIGQTRYIKSVCQRFGMDGAKKRSVPHDLSRTLD-KSENHPSVDGNAPYREAVGSLMWASVMTRLDIANAIREVAKYSSNPNVTHWRAVRCILAYL 864 K ++ G++V+ KARL AKGF+Q G+DY +TF+PT + AS ++V+ LA + EL HWD +QAF+Q+ + ++F++L GCG SG ++RL K+LYG KQASR F RLV L++ G EQ +DP VLR++ V M+A HVDD+L AG ++ + + + + ++ G++ +++GC RDR A T+ + Q YI+SV +RF + + S+P S T D +S G+ P+RE VGSLMW + TR DI+NA+R VA++S P +HW+A + IL YL Sbjct: 502 KADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNV--CRTSSIP--ASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYL 785
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE) HSP 1 Score: 232 bits (591), Expect = 7.300e-68 Identity = 115/282 (40.78%), Postives = 182/282 (64.54%), Query Frame = 1 Query: 19 GEVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAADKDWELKHWDAKQAFIQANISEKIFVRLCDGCGISSGMILRLVKALYGTKQASREFNNRLVHVLEQCGLEQCRADPYVLRYIRDGVVCAMIAPHVDDLLVAGKIDVSIWICSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTIGQTRYIKSVCQRFGMDGAKKRSVPHDLSRTLDKSENHPSVDGNAPYREAVGSLMWASVMTRLDIANAIREVAKYSSNPNVTHWRAVRCILAYL 864 G++V+ KARL AKGF+Q G+DY +TF+PT + AS+++++ LA D E H+D +QAF+Q+ + ++F++L GC +G ++RL K+LYG +QASR F+ RLV L++ G EQ +DP VL ++ V MIA HVDD+L AG ++ + + + ++ G++ +++GC +RDR A T+ + Q YI+SV +RF + + S+P L+ +S G+ P+R+ VGSLMW + TR DI+NA+R VA++S PN +HW+A + IL YL Sbjct: 208 GKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLLVALACKYDLEFLHFDIEQAFVQSELDHEVFMKLPPGCESMTGKVVRLDKSLYGLRQASRTFHKRLVSDLKRIGFEQSLSDPCVLHFMMGDEVLGMIAIHVDDILYAGIERLAEMVVEALGDSLPTKNLGEVRFFLGCAFARDREAGTIEMSQESYIRSVLERFNV--CRTSSIPASLTNDY-RSVIEDEGAGDVPFRDVVGSLMWIANQTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYL 486
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 238 bits (606), Expect = 1.350e-67 Identity = 123/288 (42.71%), Postives = 186/288 (64.58%), Query Frame = 1 Query: 4 KTNKFGEVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAADKDWELKHWDAKQAFIQANISEKIFVRLCDGCGISSGMILRLVKALYGTKQASREFNNRLVHVLEQCGLEQCRADPYVLRYIRDGVVCAMIAPHVDDLLVAGKIDVSIWICSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTIGQTRYIKSVCQRFGMDGAKKRSVPHDLSRTLD-KSENHPSVDGNAPYREAVGSLMWASVMTRLDIANAIREVAKYSSNPNVTHWRAVRCILAYL 864 K ++ G++V+ KARL AKGF+Q G+DY +TF+PT + AS ++V+ LA + EL HWD +QAF+Q+ + ++F++L GCG SG ++RL K+LYG KQASR F RLV L++ G EQ +DP VLR++ V M+A HVDD+L AG ++ + + + + ++ G++ +++GC RDR A T+ + Q YI+SV +RF + + S+P S T D +S G+ P+RE VGSLMW + TR DI+NA+R VA++S P +HW+A + IL YL Sbjct: 769 KADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNV--CRTSSIP--ASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYL 1052
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE) HSP 1 Score: 230 bits (587), Expect = 3.800e-67 Identity = 116/287 (40.42%), Postives = 182/287 (63.41%), Query Frame = 1 Query: 4 KTNKFGEVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAADKDWELKHWDAKQAFIQANISEKIFVRLCDGCGISSGMILRLVKALYGTKQASREFNNRLVHVLEQCGLEQCRADPYVLRYIRDGVVCAMIAPHVDDLLVAGKIDVSIWICSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTIGQTRYIKSVCQRFGMDGAKKRSVPHDLSRTLDKSENHPSVDGNAPYREAVGSLMWASVMTRLDIANAIREVAKYSSNPNVTHWRAVRCILAYL 864 K ++ G++V+ KARL AKGF+Q G+DY TF+PT + AS+++++ LA + EL H D +QAF+Q + +F++L GCG SG ++RL K+LYG KQASR F RLV L++ G EQ +DP VLR++ V M+A HVDD+L AG ++ + + + + ++ G++++++GC RDR A T+ I Q YI+SV +RF + + S+P + +++S G+ P+RE VG MW + TR DI+N +R VA++S P ++HW+A + IL YL Sbjct: 221 KADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQTKLDHAVFMKLPPGCGTMSGKVVRLNKSLYGLKQASRTFYMRLVSDLKRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDILYAGSKSLAETVVAALGDSLPTKNLGEVKFFLGCAFRRDREAGTIEISQESYIRSVLERFNV--VRTSSIPASPT-VVNRSVMENEEAGDVPFREVVGCAMWIASQTRPDISNVVRAVARHSHEPKLSHWKAAQKILNYL 504
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE) HSP 1 Score: 235 bits (599), Expect = 1.410e-66 Identity = 120/287 (41.81%), Postives = 183/287 (63.76%), Query Frame = 1 Query: 4 KTNKFGEVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAADKDWELKHWDAKQAFIQANISEKIFVRLCDGCGISSGMILRLVKALYGTKQASREFNNRLVHVLEQCGLEQCRADPYVLRYIRDGVVCAMIAPHVDDLLVAGKIDVSIWICSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTIGQTRYIKSVCQRFGMDGAKKRSVPHDLSRTLDKSENHPSVDGNAPYREAVGSLMWASVMTRLDIANAIREVAKYSSNPNVTHWRAVRCILAYL 864 K ++ G++V+ KARL AKGFRQ G+DY +TF+PT + AS+++++ LA D EL HWD +QAF+Q+ + ++F++L GCG SG ++RL K+LYG KQASR F RLV L++ G EQ +DP VLR++ V M+A HVDD+L AG ++ + + + ++ G++++++GC RDR A T+ I Q YI+SV +RF + + S+P + ++S G+ P+RE VG LMW + TR DI+NA+R VA++S P W+A + IL YL Sbjct: 834 KADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSDLKRIGFEQSLSDPCVLRFMMGDEVLGMVAIHVDDILYAGTKSLAKVVVEALGDSLPTKNLGEVKFFLGCAFIRDREAGTIEISQESYIRSVLERFKI--CRTSSIPASPAND-NRSVMEDEEAGDVPFREVVGCLMWVANGTRPDISNAVRAVARHSHEPKKRDWKAAQKILNYL 1117
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE) HSP 1 Score: 227 bits (578), Expect = 8.780e-65 Identity = 121/289 (41.87%), Postives = 180/289 (62.28%), Query Frame = 1 Query: 4 KTNKFGEVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAADKDWELKHWDAKQAFIQANISEKIFVRLCDGCGISSGMILRLVKALYGTKQASREFNNRLVHVLEQCGLEQCRADPYVLRYIRDGVVCAMIAPHVDDLLVAGKIDVSIWICSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTIGQTRYIKSVCQRFGM--DGAKKRSVPHDLSRTLDKSENHPSVDGNAPYREAVGSLMWASVMTRLDIANAIREVAKYSSNPNVTHWRAVRCILAYL 864 K ++ G++V+ KARL AKGF+Q G+DY +TF+PT + AS ++V+ LA + EL HWD +QAF+Q+ + ++F++L GCG SG ++RL K+LY KQ SR F NRLV L++ G EQ +DP VLR++ V M+A HVDD+L AG ++ + + + + ++ G++++++GCE RDR A T I Q YI+SV +F + + S +D +R+L + E V P+RE VGSLMW + TR DI A R VA+ S NP W+A + IL YL Sbjct: 36 KADEIGKIVKAKARLVAKGFKQKYGVDYVETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYELKQESRTFYNRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDREAGTKEISQESYIRSVLDKFNVCSTSSTPASPANDNNRSLKEDEGAKDV----PFREVVGSLMWIANRTRCDINIATRAVARQSHNPKKRDWKASQKILNYL 320
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE) HSP 1 Score: 224 bits (571), Expect = 1.580e-63 Identity = 118/287 (41.11%), Postives = 180/287 (62.72%), Query Frame = 1 Query: 4 KTNKFGEVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAADKDWELKHWDAKQAFIQANISEKIFVRLCDGCGISSGMILRLVKALYGTKQASREFNNRLVHVLEQCGLEQCRADPYVLRYIRDGVVCAMIAPHVDDLLVAGKIDVSIWICSRIKEQFSIEDFGDLEYYMGCEISRDRTAQTVTIGQTRYIKSVCQRFGMDGAKKRSVPHDLSRTLDKSENHPSVDGNAPYREAVGSLMWASVMTRLDIANAIREVAKYSSNPNVTHWRAVRCILAYL 864 K ++ G++V+ KARL AKGF+Q G+DY +TF+PT + AS+++V+ LA + EL H D +QAF+Q+ + ++F++L GC SG I+RL K+LYG KQASR F RLV L + G EQ +DP VLR++ V +IA HVDD+L AG ++ I + + ++ G++ +++GC SRDR A T+ I Q YI+SV +RF + + S+P + +S G+ P+RE VG LMW + TR + +NA+R VA++S P + W+A + IL+YL Sbjct: 472 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNI--CRTSSIPASPANDS-RSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYL 755 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11021.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig11021.1.1 >prot_C-tenellus_contig11021.1.1 ID=prot_C-tenellus_contig11021.1.1|Name=mRNA_C-tenellus_contig11021.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=289bp RKTNKFGEVVRYKARLGAKGFRQIEGLDYQDTFAPTPSPASLKMVLGLAAback to top mRNA from alignment at C-tenellus_contig11021:2446..3312+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig11021.1.1 ID=mRNA_C-tenellus_contig11021.1.1|Name=mRNA_C-tenellus_contig11021.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=867bp|location=Sequence derived from alignment at C-tenellus_contig11021:2446..3312+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig11021:2446..3312+ >mRNA_C-tenellus_contig11021.1.1 ID=mRNA_C-tenellus_contig11021.1.1|Name=mRNA_C-tenellus_contig11021.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=867bp|location=Sequence derived from alignment at C-tenellus_contig11021:2446..3312+ (Choristocarpus tenellus KU2346)back to top |