mRNA_C-tenellus_contig11018.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11018.1.1
Unique NamemRNA_C-tenellus_contig11018.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11018.1.1 vs. uniprot
Match: A0A6H5LC81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC81_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 3.590e-90
Identity = 156/268 (58.21%), Postives = 205/268 (76.49%), Query Frame = 1 
Query:    1 MPSISGFIQSLLAEDMYATGMIEKLDERIQELNSGQLKLLVRFCKRKIPGLTNKTIVDAYSKLLKKATVETERRHEDEVREERDRLRQLKAAHAGVNAKAWDTSHAELDRELAIFQHFLKAKARRVAEEEVMGEEMERLHDQLMALPERRVAADKKK-ALWSLTGAVFIITG--VGLAFLPVALAAAISIAVLTCCTGICSIGLGQLQGRVVTPCSDEKLIKAATRAKAKTLLRVYREEVKRNYEEFERAFAEDMKWRDNWVKACRQE 795
            MPSI+GFIQSLL+EDMYATGM+EK+DERI +LN+GQL+LL+ F + K+PGLTN T++DAY+KLL+KATVE E+RHE+EV  ER+RL+QLKAAHAGVNAKAWDTSHA LD+ELA FQ FLK+KARR+AEE+V+ EEME+LH+QLMALP RR AA+ K+ A W+ +  +F + G  + L  +PV +  A+   + TC        +G L+G VVTP  D+  I+  TR +AK  L+ YR +V+R +E  E  FA DMKWRD+W +A ++E
Sbjct:    1 MPSIAGFIQSLLSEDMYATGMLEKMDERISQLNAGQLRLLISFVENKVPGLTNPTVLDAYTKLLRKATVEREKRHEEEVHGERERLKQLKAAHAGVNAKAWDTSHASLDKELAKFQKFLKSKARRIAEEQVLQEEMEKLHNQLMALPARRAAAETKRHAWWACSAVLFAVVGPILILTLVPVGVLIAVGAFLATCVLAAVCWFVGVLRGIVVTPALDDDAIEDKTRKRAKETLKGYRADVRRTFEATEEIFAADMKWRDDWAEARKKE 268
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BLAST of mRNA_C-tenellus_contig11018.1.1 vs. uniprot
Match: D7G1Z2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Z2_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 1.240e-89
Identity = 159/279 (56.99%), Postives = 207/279 (74.19%), Query Frame = 1 
Query:    1 MPSISGFIQSLLAEDMYATGMIEKLDERIQELNSGQLKLLVRFCKRKIPGLTNKTIVDAYSKLLKKATVETERRHEDEVREERDRLRQLKAAHAGVNAKAWDTSHAELDRELAIFQHFLKAKARRVAEEEVMGEEMERLHDQLMALPERRVAADKKKALWSLTGAV-FIITG--VGLAFLPVALAAAISIAVLTCCTGICSIGLGQLQGRVVTPCSDEKLIKAATRAKAKTLLRVYREEVKRNYEEFERAFAEDMKWRDNWVKACRQEKKERLCTAQNK 828
            MPSI+GFIQSLL+EDMYATGM+EK+DERI +LN+GQL+LLV + ++K+PGLTN T++DAY+KLL+KAT E E+RHE+EV  ER+RL+QLKAAHAGVNAKAWDTSHA LD+ELA FQ FLK+KARR+AEE+V+ EEME+LH+QLMALP RR AA+ K+  W   GAV F + G  + L  +PV +  A+   + TC        +G L G VVTP  D+  I+  TR +AK  L+ YR EV+R +E  E  FA +MKWRD+W +A ++E++     A  K
Sbjct:    1 MPSIAGFIQSLLSEDMYATGMLEKMDERISQLNAGQLRLLVSYVEKKVPGLTNPTVLDAYTKLLRKATAEREKRHEEEVHGERERLKQLKAAHAGVNAKAWDTSHASLDKELAKFQKFLKSKARRIAEEQVLQEEMEKLHNQLMALPARRAAAETKRHAWWACGAVLFAVVGPILILTLVPVGVLIAVGAFLATCVLAAVCWFVGVLSGIVVTPALDDDAIEDKTRKRAKETLKGYRAEVRRTFEATEEIFAAEMKWRDDWAEARKKERRNEXXQANEK 279
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11018.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LC81_9PHAE3.590e-9058.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1Z2_ECTSI1.240e-8956.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11018contigC-tenellus_contig11018:3430..5127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size888
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003610.1
Cds size888
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.5019927-CDS-C-tenellus_contig11018:3429..40831680789159.5019927-CDS-C-tenellus_contig11018:3429..4083Choristocarpus tenellus KU2346CDSC-tenellus_contig11018 3430..4083 -
1680789159.5119169-CDS-C-tenellus_contig11018:4575..47261680789159.5119169-CDS-C-tenellus_contig11018:4575..4726Choristocarpus tenellus KU2346CDSC-tenellus_contig11018 4576..4726 -
1680789159.522288-CDS-C-tenellus_contig11018:5044..51271680789159.522288-CDS-C-tenellus_contig11018:5044..5127Choristocarpus tenellus KU2346CDSC-tenellus_contig11018 5045..5127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11018.1.1prot_C-tenellus_contig11018.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11018 3430..5127 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11018.1.1

>prot_C-tenellus_contig11018.1.1 ID=prot_C-tenellus_contig11018.1.1|Name=mRNA_C-tenellus_contig11018.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=296bp
MPSISGFIQSLLAEDMYATGMIEKLDERIQELNSGQLKLLVRFCKRKIPG
LTNKTIVDAYSKLLKKATVETERRHEDEVREERDRLRQLKAAHAGVNAKA
WDTSHAELDRELAIFQHFLKAKARRVAEEEVMGEEMERLHDQLMALPERR
VAADKKKALWSLTGAVFIITGVGLAFLPVALAAAISIAVLTCCTGICSIG
LGQLQGRVVTPCSDEKLIKAATRAKAKTLLRVYREEVKRNYEEFERAFAE
DMKWRDNWVKACRQEKKERLCTAQNKKMQQTHKSRVAPSSSPSSVD
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mRNA from alignment at C-tenellus_contig11018:3430..5127-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11018.1.1 ID=mRNA_C-tenellus_contig11018.1.1|Name=mRNA_C-tenellus_contig11018.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1698bp|location=Sequence derived from alignment at C-tenellus_contig11018:3430..5127- (Choristocarpus tenellus KU2346)
ATGCCTTCGATCTCCGGCTTCATTCAGAGTCTTTTGGCGGAGGACATGTA
TGCCACAGGCATGATCGAGAAGCTTGACGAGAGGTGATCGAAGGAGCATC
TTCCACAGACCACTATGCACACAGGCGCGTGCATGTCGTAGACCCTTGGA
CTCATAAAAAGTAGTTGTGTCGGCCATAACCTATACCATATCGGGCCGAA
CTAAGGTGCAAAGTTCTAACCGCAACAGGTCGGTAAATTTTCGTTCTAGA
CTTACCTCTTTGATATTGCTTGCAGAATTAAGCCCTTCCCAATCGATGTG
GTGGCATGAAAGGACCGTGGTGCGAATCGTTATTTCGACGATGCACATAG
CCCCCATATCAGTATTCTTTTGATCCCACATGATGAATTTGTGGCCAACA
GGATACAAGAACTCAACAGTGGTCAGTTGAAACTCCTTGTACGTTTCTGC
AAGCGCAAGATCCCAGGACTTACAAACAAGACCATTGTTGATGCCTACAG
CAAGTTGCTGAAGAAGGCGACTGTCGAGACTGAGCGTCGTCATGAGGATG
AGGTACAATAGCGCAGTATCAGGTTCATTTGACTTCCCCTGCTTCGTTGA
GATCGAAGCATAGAGAAGTACACACTCATGAGCCGCTTGTTTGTCTAGGT
AACGAATTGGAGGGGAGAGGCATTGATCTAATGCAGAGTGTGGAGGGATA
AATGTCACCACAATATAAAATGTACATGGTGATCGCATGAACCCTGCCTG
TCTCTGAAGATACCTTTCCGTGTCCTTCTAGATCTCCTTCCCGTTCACCA
GACACGCCCACCATCCTCTTTTCAGTATTACTGTTTTTGCCAAGTCAACT
CCACCTGTGGTAGCGGAACATCATCATTGCAATGTCTCTGGCACTGTAAT
AAAGATTTACAAAAATCCACTTTCTACGAAACTGTATGGCACTCAGACGA
CAGTAATTTTGCAACCCTCAGCTCCTGCGACCAACCCTACCTGTTTACCT
CCCTGCCTACATTCCACGCTATGGATGCAATTGCACAAACTCAGGTCAGG
GAGGAACGGGATAGACTTCGTCAACTTAAGGCAGCACATGCAGGAGTGAA
TGCCAAAGCATGGGACACCTCACATGCTGAACTTGACAGGGAGCTGGCCA
TATTCCAACACTTCCTCAAGGCCAAGGCCCGCAGGGTGGCGGAAGAGGAG
GTGATGGGCGAGGAAATGGAGAGGTTGCACGACCAGCTCATGGCATTGCC
AGAGAGAAGAGTTGCTGCAGATAAGAAGAAGGCACTTTGGAGCTTGACTG
GAGCAGTGTTTATCATTACCGGTGTAGGCTTAGCTTTTCTTCCAGTTGCT
CTTGCTGCGGCAATAAGTATTGCAGTTCTAACTTGCTGTACTGGAATCTG
CAGCATAGGACTTGGCCAGCTCCAGGGGCGAGTTGTAACCCCTTGCTCAG
ATGAGAAGCTGATTAAGGCGGCAACAAGAGCAAAAGCAAAAACGTTACTG
AGAGTCTATCGTGAGGAGGTGAAGAGAAACTATGAGGAATTTGAGAGAGC
CTTTGCTGAGGATATGAAGTGGAGGGATAACTGGGTCAAGGCATGCAGGC
AAGAGAAAAAGGAAAGACTTTGCACAGCCCAGAACAAGAAAATGCAACAA
ACGCACAAGAGTCGAGTAGCTCCATCCTCTTCTCCCAGCTCTGTCGAT
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Coding sequence (CDS) from alignment at C-tenellus_contig11018:3430..5127-

>mRNA_C-tenellus_contig11018.1.1 ID=mRNA_C-tenellus_contig11018.1.1|Name=mRNA_C-tenellus_contig11018.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=888bp|location=Sequence derived from alignment at C-tenellus_contig11018:3430..5127- (Choristocarpus tenellus KU2346)
ATGCCTTCGATCTCCGGCTTCATTCAGAGTCTTTTGGCGGAGGACATGTA
TGCCACAGGCATGATCGAGAAGCTTGACGAGAGGATACAAGAACTCAACA
GTGGTCAGTTGAAACTCCTTGTACGTTTCTGCAAGCGCAAGATCCCAGGA
CTTACAAACAAGACCATTGTTGATGCCTACAGCAAGTTGCTGAAGAAGGC
GACTGTCGAGACTGAGCGTCGTCATGAGGATGAGGTCAGGGAGGAACGGG
ATAGACTTCGTCAACTTAAGGCAGCACATGCAGGAGTGAATGCCAAAGCA
TGGGACACCTCACATGCTGAACTTGACAGGGAGCTGGCCATATTCCAACA
CTTCCTCAAGGCCAAGGCCCGCAGGGTGGCGGAAGAGGAGGTGATGGGCG
AGGAAATGGAGAGGTTGCACGACCAGCTCATGGCATTGCCAGAGAGAAGA
GTTGCTGCAGATAAGAAGAAGGCACTTTGGAGCTTGACTGGAGCAGTGTT
TATCATTACCGGTGTAGGCTTAGCTTTTCTTCCAGTTGCTCTTGCTGCGG
CAATAAGTATTGCAGTTCTAACTTGCTGTACTGGAATCTGCAGCATAGGA
CTTGGCCAGCTCCAGGGGCGAGTTGTAACCCCTTGCTCAGATGAGAAGCT
GATTAAGGCGGCAACAAGAGCAAAAGCAAAAACGTTACTGAGAGTCTATC
GTGAGGAGGTGAAGAGAAACTATGAGGAATTTGAGAGAGCCTTTGCTGAG
GATATGAAGTGGAGGGATAACTGGGTCAAGGCATGCAGGCAAGAGAAAAA
GGAAAGACTTTGCACAGCCCAGAACAAGAAAATGCAACAAACGCACAAGA
GTCGAGTAGCTCCATCCTCTTCTCCCAGCTCTGTCGAT
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