mRNA_C-tenellus_contig11001.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11001.1.1
Unique NamemRNA_C-tenellus_contig11001.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11001.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11001contigC-tenellus_contig11001:110..745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size636
Hectar predicted targeting categoryother localisation
Exons1
Cds size435
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789158.878192-UTR-C-tenellus_contig11001:109..2441680789158.878192-UTR-C-tenellus_contig11001:109..244Choristocarpus tenellus KU2346UTRC-tenellus_contig11001 110..244 -
1680789158.9016564-UTR-C-tenellus_contig11001:679..7451680789158.9016564-UTR-C-tenellus_contig11001:679..745Choristocarpus tenellus KU2346UTRC-tenellus_contig11001 680..745 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789158.8898597-CDS-C-tenellus_contig11001:244..6791680789158.8898597-CDS-C-tenellus_contig11001:244..679Choristocarpus tenellus KU2346CDSC-tenellus_contig11001 245..679 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11001.1.1prot_C-tenellus_contig11001.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11001 245..679 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11001.1.1

>prot_C-tenellus_contig11001.1.1 ID=prot_C-tenellus_contig11001.1.1|Name=mRNA_C-tenellus_contig11001.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=145bp
MGEEGQRLEMEQRVSVKSPKVSDHKATTTRTRCALPGAPAMEQGKFLQHG
DTIRFVVRDPRKVQEEEVALPGQYIIGSNNNKTERLVNPLLLLPGQRPAL
ARALVGCLRLLFDVTGGYCVIIRLPDASVPGTTITPCSPYTSSK*
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mRNA from alignment at C-tenellus_contig11001:110..745-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11001.1.1 ID=mRNA_C-tenellus_contig11001.1.1|Name=mRNA_C-tenellus_contig11001.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=636bp|location=Sequence derived from alignment at C-tenellus_contig11001:110..745- (Choristocarpus tenellus KU2346)
GAGATTATTTATAGCGGTTGGCATCGCATTAGTGGAATTCGCGTTTACGT
GGAGTGCTTTCATGATATGGGCGAGGAGGGACAAAGGCTGGAGATGGAAC
AAAGGGTATCAGTGAAGTCTCCAAAGGTCTCTGATCATAAGGCAACCACG
ACGAGAACACGATGTGCTCTACCAGGAGCCCCAGCGATGGAGCAAGGAAA
GTTCCTCCAACATGGTGACACCATCAGATTTGTAGTTCGCGACCCACGCA
AGGTCCAAGAGGAGGAGGTAGCACTACCTGGACAATATATCATTGGCAGT
AATAATAATAAAACCGAAAGGCTAGTTAATCCACTCCTGCTTCTCCCTGG
ACAACGCCCAGCTTTGGCAAGGGCTCTAGTGGGATGCTTAAGGTTGTTGT
TTGATGTCACTGGAGGCTATTGCGTTATAATACGGTTGCCAGATGCATCA
GTGCCTGGAACGACAATTACTCCATGCAGTCCTTACACCTCCAGCAAGTA
GAAGAGAATATAACAGGGGGATTAATATGTTGTTCGACTGTGTCAGTTTG
ATGTTCTATTAAATTTAGAGTTTGGCGTGTGAAGGGCTTTACAGAGTCCT
ACAGTATGATATCACTATATGACATGCATGAGTGCC
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Coding sequence (CDS) from alignment at C-tenellus_contig11001:110..745-

>mRNA_C-tenellus_contig11001.1.1 ID=mRNA_C-tenellus_contig11001.1.1|Name=mRNA_C-tenellus_contig11001.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=435bp|location=Sequence derived from alignment at C-tenellus_contig11001:110..745- (Choristocarpus tenellus KU2346)
ATGGGCGAGGAGGGACAAAGGCTGGAGATGGAACAAAGGGTATCAGTGAA
GTCTCCAAAGGTCTCTGATCATAAGGCAACCACGACGAGAACACGATGTG
CTCTACCAGGAGCCCCAGCGATGGAGCAAGGAAAGTTCCTCCAACATGGT
GACACCATCAGATTTGTAGTTCGCGACCCACGCAAGGTCCAAGAGGAGGA
GGTAGCACTACCTGGACAATATATCATTGGCAGTAATAATAATAAAACCG
AAAGGCTAGTTAATCCACTCCTGCTTCTCCCTGGACAACGCCCAGCTTTG
GCAAGGGCTCTAGTGGGATGCTTAAGGTTGTTGTTTGATGTCACTGGAGG
CTATTGCGTTATAATACGGTTGCCAGATGCATCAGTGCCTGGAACGACAA
TTACTCCATGCAGTCCTTACACCTCCAGCAAGTAG
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