mRNA_C-tenellus_contig11000.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11000.2.1
Unique NamemRNA_C-tenellus_contig11000.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11000.2.1 vs. uniprot
Match: D7FZP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZP1_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 5.170e-20
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1
Query:    1 VVERARQEVGDEKGQLQAACYAIRFAGSVVGCLGGALLYNADEWGWGLSFQQVCL 165
            VVERAR E  + +GQ+QA CYAIRFAG+V+GCLGGALL+N   WGWGL+F+QVCL
Sbjct:  212 VVERARGEAEESRGQMQATCYAIRFAGNVIGCLGGALLFNRGAWGWGLTFRQVCL 266          
BLAST of mRNA_C-tenellus_contig11000.2.1 vs. uniprot
Match: A0A836CBB7_9STRA (Folate-biopterin transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBB7_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.560e-18
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 1
Query:    1 VVERARQEVGDEKGQLQAACYAIRFAGSVVGCLGGALLYNADEWGWGLSFQQVCL 165
            VVERAR E  +++GQLQA CYA+RF GSV+GCL GA++YN  +WGWGLSF+QVCL
Sbjct:  163 VVERARLEDTEQRGQLQATCYAVRFMGSVLGCLMGAVVYNQVQWGWGLSFRQVCL 217          
BLAST of mRNA_C-tenellus_contig11000.2.1 vs. uniprot
Match: A0A7S2XY88_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY88_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.140e-18
Identity = 38/55 (69.09%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    1 VVERARQEVGDEKGQLQAACYAIRFAGSVVGCLGGALLYNADEWGWGLSFQQVCL 165
            VVER R E    KGQ QA CYA+RF GSV GCLGG LLYN+  WGWGL+F QVCL
Sbjct:  171 VVERGRTEEEGSKGQAQATCYAVRFGGSVAGCLGGTLLYNSTNWGWGLTFPQVCL 225          
BLAST of mRNA_C-tenellus_contig11000.2.1 vs. uniprot
Match: D7G1P4_ECTSI (Biopterin transport-related protein BT1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1P4_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.820e-11
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 VVERARQEVGDEKGQLQAACYAIRFAGSVVGCLGGALLYNADEWGWGLSFQQV 159
            +VER++ E  + +G +QA  Y++RF GS++G   G LLYN DEWGWGLS QQ+
Sbjct:  193 LVERSKHEPAETRGSMQAIGYSVRFVGSLLGSTMGLLLYNKDEWGWGLSIQQL 245          
BLAST of mRNA_C-tenellus_contig11000.2.1 vs. uniprot
Match: A0A6V1WMI5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WMI5_HETAK)

HSP 1 Score: 65.1 bits (157), Expect = 6.350e-11
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    1 VVERARQEVGDEKGQLQAACYAIRFAGSVVGCLGGALLYNADEWGWGLSFQQV 159
            VVER++ E  DE+G +QA  Y IRF GS++G   GA+LYN D WGWGL+  Q+
Sbjct:  183 VVERSQHESDDERGTIQAQGYIIRFVGSILGSAMGAVLYNRDTWGWGLTTPQM 235          
BLAST of mRNA_C-tenellus_contig11000.2.1 vs. uniprot
Match: A0A7S3GWJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GWJ9_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.050e-10
Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    4 VERARQEVGDEKGQLQAACYAIRFAGSVVGCLGGALLYNADEWGWGLSFQQV 159
            V+R+R E  D++GQ+QA+ Y++RFAG V+G + GA + N D WG GL+FQQV
Sbjct:  157 VQRSRFEKEDQRGQMQASFYSVRFAGGVIGAICGASVCNKDTWGVGLTFQQV 208          
BLAST of mRNA_C-tenellus_contig11000.2.1 vs. uniprot
Match: D8LI15_ECTSI (Folate/biopterin transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI15_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 6.920e-9
Identity = 24/53 (45.28%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    1 VVERARQEVGDEKGQLQAACYAIRFAGSVVGCLGGALLYNADEWGWGLSFQQV 159
            VVE+ ++E     G +QA+ Y  R+ GS +G +GGA+LYN D WGWGL+  ++
Sbjct:  245 VVEKTQRESMSNMGNIQASGYIARYFGSAIGAVGGAVLYNKDTWGWGLTISEL 297          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11000.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FZP1_ECTSI5.170e-2070.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CBB7_9STRA1.560e-1869.09Folate-biopterin transporter n=1 Tax=Tribonema min... [more]
A0A7S2XY88_9STRA2.140e-1869.09Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7G1P4_ECTSI1.820e-1152.83Biopterin transport-related protein BT1 n=2 Tax=Ec... [more]
A0A6V1WMI5_HETAK6.350e-1154.72Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3GWJ9_9STRA1.050e-1053.85Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
D8LI15_ECTSI6.920e-945.28Folate/biopterin transporter n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11000contigC-tenellus_contig11000:5101..5265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZP1
PFAMsBT1
Model size165
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.48e-21
EggNOG OGs29S8M@1|root,2RXD7@2759|Eukaryota
DescriptionBT1 family
Cds size165
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789158.8482134-CDS-C-tenellus_contig11000:5100..52651680789158.8482134-CDS-C-tenellus_contig11000:5100..5265Choristocarpus tenellus KU2346CDSC-tenellus_contig11000 5101..5265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11000.2.1prot_C-tenellus_contig11000.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11000 5101..5265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11000.2.1

>prot_C-tenellus_contig11000.2.1 ID=prot_C-tenellus_contig11000.2.1|Name=mRNA_C-tenellus_contig11000.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=55bp
VVERARQEVGDEKGQLQAACYAIRFAGSVVGCLGGALLYNADEWGWGLSF
QQVCL
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mRNA from alignment at C-tenellus_contig11000:5101..5265-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11000.2.1 ID=mRNA_C-tenellus_contig11000.2.1|Name=mRNA_C-tenellus_contig11000.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=165bp|location=Sequence derived from alignment at C-tenellus_contig11000:5101..5265- (Choristocarpus tenellus KU2346)
GTGGTGGAGCGGGCGAGGCAAGAGGTGGGCGATGAGAAGGGTCAACTTCA AGCTGCCTGCTACGCAATTCGATTTGCAGGCAGTGTGGTGGGGTGCCTGG GGGGTGCCTTGCTGTACAATGCGGACGAGTGGGGCTGGGGGCTTAGCTTC CAGCAGGTTTGTTTG
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Coding sequence (CDS) from alignment at C-tenellus_contig11000:5101..5265-

>mRNA_C-tenellus_contig11000.2.1 ID=mRNA_C-tenellus_contig11000.2.1|Name=mRNA_C-tenellus_contig11000.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=165bp|location=Sequence derived from alignment at C-tenellus_contig11000:5101..5265- (Choristocarpus tenellus KU2346)
GTGGTGGAGCGGGCGAGGCAAGAGGTGGGCGATGAGAAGGGTCAACTTCA
AGCTGCCTGCTACGCAATTCGATTTGCAGGCAGTGTGGTGGGGTGCCTGG
GGGGTGCCTTGCTGTACAATGCGGACGAGTGGGGCTGGGGGCTTAGCTTC
CAGCAGGTTTGTTTG
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