mRNA_C-tenellus_contig10990.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10990.2.1
Unique NamemRNA_C-tenellus_contig10990.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10990.2.1 vs. uniprot
Match: D8LRQ6_ECTSI (Methyltransferase type 12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRQ6_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 4.300e-17
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1
Query:    4 LAAKSQEGNEMVAQLVKSLGSALVYADPGNFETNRKLWNNYAAEWDPEA 150
            L  KS+ GNEMV+ LV+SLGSALVY D GNF+TNRKLW+NYAAEW+P+A
Sbjct:    8 LTEKSKAGNEMVSNLVQSLGSALVYPDAGNFDTNRKLWDNYAAEWEPDA 56          
BLAST of mRNA_C-tenellus_contig10990.2.1 vs. uniprot
Match: A0A7S2SUS9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUS9_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.680e-11
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1
Query:   16 SQEGNEMVAQLVKSLGSALVYADPGNFETNRKLWNNYAAEWDP 144
            +QEG+ MV +L+KSL  A+VY D GNF+TNRKLW+ YA EWDP
Sbjct:   20 AQEGSPMVLELLKSLNQAVVYPDAGNFDTNRKLWDLYAGEWDP 62          
BLAST of mRNA_C-tenellus_contig10990.2.1 vs. uniprot
Match: A0A0G4GCV4_9ALVE (Uncharacterized protein (Fragment) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GCV4_9ALVE)

HSP 1 Score: 62.0 bits (149), Expect = 1.800e-11
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 1
Query:   13 KSQEGNEMVAQLVKSLGSALVYADPGNFETNRKLWNNYAAEWDP 144
            KS++ +  V  LV+SLGSALVY +  N ETNRKLWN YA +WDP
Sbjct:   16 KSEDKSSAVLDLVRSLGSALVYPESTNIETNRKLWNQYAKQWDP 59          
BLAST of mRNA_C-tenellus_contig10990.2.1 vs. uniprot
Match: A0A0G4GG79_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GG79_VITBC)

HSP 1 Score: 60.5 bits (145), Expect = 2.290e-9
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1
Query:   25 GNEMVAQLVKSLGSALVYADPGNFETNRKLWNNYAAEWDPE 147
            GN ++ QLV++L SA+VY+D GNFETN+KLWN YA  W  E
Sbjct:   22 GNPLLVQLVQTLNSAVVYSDAGNFETNKKLWNEYAKSWRAE 62          
BLAST of mRNA_C-tenellus_contig10990.2.1 vs. uniprot
Match: A0A835Z8T5_9STRA (Methyltransferase type 12 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8T5_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.300e-7
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1
Query:    4 LAAKSQ-EGNEMVAQLVKSLGSALVY-ADPGNFETNRKLWNNYAAEWDPEA 150
            LA ++Q   + M+A L+KSLG A+VY  D GN +TNRKLW+ YA+EW  +A
Sbjct:    8 LAERAQASASPMIANLIKSLGQAIVYYPDAGNLDTNRKLWDAYASEWSQDA 58          
BLAST of mRNA_C-tenellus_contig10990.2.1 vs. uniprot
Match: A0A7S3UJ34_OXYMA (Hypothetical protein (Fragment) n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3UJ34_OXYMA)

HSP 1 Score: 51.2 bits (121), Expect = 8.420e-7
Identity = 24/43 (55.81%), Postives = 27/43 (62.79%), Query Frame = 1
Query:   22 EGNEMVAQLVKSLGSALVYADPGNFETNRKLWNNYAAEWDPEA 150
            E    VA LV +L  A+VY D  N  TNRKLW+ YAA WDP A
Sbjct:   11 ESQPSVAGLVDALAPAMVYTDAPNAVTNRKLWDAYAAAWDPSA 53          
BLAST of mRNA_C-tenellus_contig10990.2.1 vs. uniprot
Match: A0A7S3XH85_OXYMA (Hypothetical protein (Fragment) n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3XH85_OXYMA)

HSP 1 Score: 51.2 bits (121), Expect = 1.860e-6
Identity = 24/43 (55.81%), Postives = 27/43 (62.79%), Query Frame = 1
Query:   22 EGNEMVAQLVKSLGSALVYADPGNFETNRKLWNNYAAEWDPEA 150
            E    VA LV +L  A+VY D  N  TNRKLW+ YAA WDP A
Sbjct:   11 ESQPSVAGLVDALAPAMVYTDAPNAVTNRKLWDAYAAAWDPSA 53          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10990.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LRQ6_ECTSI4.300e-1773.47Methyltransferase type 12 n=1 Tax=Ectocarpus silic... [more]
A0A7S2SUS9_9STRA1.680e-1165.12Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0G4GCV4_9ALVE1.800e-1161.36Uncharacterized protein (Fragment) n=1 Tax=Chromer... [more]
A0A0G4GG79_VITBC2.290e-960.98Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A835Z8T5_9STRA1.300e-752.94Methyltransferase type 12 n=1 Tax=Tribonema minus ... [more]
A0A7S3UJ34_OXYMA8.420e-755.81Hypothetical protein (Fragment) n=1 Tax=Oxyrrhis m... [more]
A0A7S3XH85_OXYMA1.860e-655.81Hypothetical protein (Fragment) n=1 Tax=Oxyrrhis m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10990contigC-tenellus_contig10990:3379..3534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRQ6
Model size156
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue7.05e-18
EggNOG OGs2CCND@1|root,2S208@2759|Eukaryota
DescriptionMethyltransferase domain
Cds size156
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789157.894988-CDS-C-tenellus_contig10990:3378..35341680789157.894988-CDS-C-tenellus_contig10990:3378..3534Choristocarpus tenellus KU2346CDSC-tenellus_contig10990 3379..3534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10990.2.1prot_C-tenellus_contig10990.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10990 3379..3534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10990.2.1

>prot_C-tenellus_contig10990.2.1 ID=prot_C-tenellus_contig10990.2.1|Name=mRNA_C-tenellus_contig10990.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=52bp
MLAAKSQEGNEMVAQLVKSLGSALVYADPGNFETNRKLWNNYAAEWDPEA
R*
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mRNA from alignment at C-tenellus_contig10990:3379..3534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10990.2.1 ID=mRNA_C-tenellus_contig10990.2.1|Name=mRNA_C-tenellus_contig10990.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=156bp|location=Sequence derived from alignment at C-tenellus_contig10990:3379..3534- (Choristocarpus tenellus KU2346)
ATGCTTGCTGCCAAGTCGCAGGAGGGGAACGAGATGGTGGCCCAACTTGT GAAGAGCCTCGGTTCGGCCCTTGTCTATGCGGATCCTGGTAACTTTGAAA CCAACCGTAAGCTGTGGAATAACTACGCGGCTGAGTGGGATCCAGAGGCC AGGTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10990:3379..3534-

>mRNA_C-tenellus_contig10990.2.1 ID=mRNA_C-tenellus_contig10990.2.1|Name=mRNA_C-tenellus_contig10990.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=156bp|location=Sequence derived from alignment at C-tenellus_contig10990:3379..3534- (Choristocarpus tenellus KU2346)
ATGCTTGCTGCCAAGTCGCAGGAGGGGAACGAGATGGTGGCCCAACTTGT
GAAGAGCCTCGGTTCGGCCCTTGTCTATGCGGATCCTGGTAACTTTGAAA
CCAACCGTAAGCTGTGGAATAACTACGCGGCTGAGTGGGATCCAGAGGCC
AGGTAG
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