mRNA_C-tenellus_contig10982.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10982.2.1
Unique NamemRNA_C-tenellus_contig10982.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10982.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10982contigC-tenellus_contig10982:3344..4938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size665
Hectar predicted targeting categoryother localisation
Exons2
Cds size663
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789157.5851963-CDS-C-tenellus_contig10982:3343..37781680789157.5851963-CDS-C-tenellus_contig10982:3343..3778Choristocarpus tenellus KU2346CDSC-tenellus_contig10982 3344..3778 -
1680789157.5999782-CDS-C-tenellus_contig10982:4710..49381680789157.5999782-CDS-C-tenellus_contig10982:4710..4938Choristocarpus tenellus KU2346CDSC-tenellus_contig10982 4711..4938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10982.2.1prot_C-tenellus_contig10982.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10982 3344..4938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10982.2.1

>prot_C-tenellus_contig10982.2.1 ID=prot_C-tenellus_contig10982.2.1|Name=mRNA_C-tenellus_contig10982.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=221bp
GTGVCVKVSKKAAVGEEEEQEMEIKREEREEKEKTVVKLEEGEELKEDNS
QEGGDGRDSAAAAEAAATAIEELETKVDGGMTALARATAEVFMGKPSGKG
LAIEPLKTPCSPQPSAHDLLQVKGSRDTHTPPPPAAADTPASPCNINTLS
SLEWRVKAVGGGEGMNKALQDQSGEKSTVKETKRVTVTEEAVLEMSNQGV
AFHPLMWDKISNRRLQWFVGP
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mRNA from alignment at C-tenellus_contig10982:3344..4938-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10982.2.1 ID=mRNA_C-tenellus_contig10982.2.1|Name=mRNA_C-tenellus_contig10982.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1595bp|location=Sequence derived from alignment at C-tenellus_contig10982:3344..4938- (Choristocarpus tenellus KU2346)
GGAACAGGTGTGTGTGTGAAAGTGAGCAAGAAGGCAGCAGTGGGAGAGGA
AGAGGAACAGGAGATGGAGATCAAGAGAGAGGAGAGGGAGGAAAAGGAGA
AGACAGTGGTTAAGCTCGAGGAGGGTGAAGAGCTGAAGGAGGATAACTCT
CAGGAGGGTGGTGATGGCAGAGACTCAGCGGCTGCTGCTGAGGCTGCTGC
GACTGCCATTGAGGAACTTGAAACGAAGGCTAGTGTTAATGAAGTACCAA
GGATTGTGTTGCTATTGGGAGAGATAGTATGAGGGGAATGGAGATATCCA
TCGTTGTTGGAGTGACACAGGTGACTTGTGACTATAGAAGGACCTGATGA
TTAGCGGCATGGAACATAGACGTGCTTCGATATAGACCACTTCTCTGGGG
TGTGGAGTTCATGGTATTGGTTGGGATATTTTCTTGAGAATGTGGGTTGA
GTTTCTTTTTTCTTTTTTTATCCTGATCTTGTCCCTCTTCCCATTCCTTG
AAAGATGGGAACGAATGCTCGCTTTTGGGGGGGGGTGTAACTAAGAAGGG
GATTCGACAGACAATTGAAAACCATTTATTAAAATGTGATTTGAAAAAGC
TTTTCAAATGCTCCATGGGGTAAATTTCAAGCAGTTCAAATCGACACTAT
AGTTCAACTTGCATCATTCGATGCACTAAATTCAGATAAGCAATCTGGTC
TACTGCCTTACTTCAGCACCCAAGGTGGCTGAAGGAAACTTGCTCTTGAA
GACCACAGAGAGAACAATGGATACAGTTTTCACTCTAAATGGGGGGGGGG
GTTCAAAGGCATGGGACGACAACCGGAGAGTAGTGGATACTCGTTCGGAA
ATTCAATATGCGCTACAATTTAAAAAAAATGTTGCAATGTTATCATATTT
TACCGACACTGGACTTGGAATGTTTCGTGTGTGTGGTGTAAGGAGGGTCA
TAAAATCAAAAGAAATTCCATACCAGGTGGGCTCCCCTCTCTCTCCAGTA
ACACCTTCCCCATTTTCCTATCCCATCTTCTCATATTTTCTTGCTCCTGC
ATTTCCGTCGCATCCATTGGAGTACCTGAAAAAAACGGCGGCCTCAAAGT
GAATGTTTCCATCCCCATACCCCAGTCTGACTTCCCAGAGCTTACACAAA
AATGTCGCAGGTGGATGGAGGTATGACTGCCCTCGCACGAGCAACTGCAG
AGGTGTTCATGGGCAAACCGTCTGGCAAAGGACTTGCCATCGAACCCCTG
AAGACCCCCTGCTCACCACAACCAAGTGCCCACGACCTGTTGCAAGTGAA
AGGAAGTCGAGATACTCACACTCCTCCTCCTCCTGCTGCTGCTGATACTC
CAGCTTCTCCGTGCAACATCAACACCCTTTCTTCCCTTGAGTGGCGAGTG
AAAGCAGTAGGTGGTGGGGAAGGCATGAACAAGGCCCTCCAGGATCAATC
AGGAGAAAAAAGCACTGTCAAAGAAACCAAGCGTGTCACAGTAACTGAAG
AAGCAGTGTTGGAGATGAGCAATCAGGGTGTAGCATTCCATCCCCTAATG
TGGGACAAAATCTCTAATCGTCGCTTGCAGTGGTTCGTTGGGCCT
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Coding sequence (CDS) from alignment at C-tenellus_contig10982:3344..4938-

>mRNA_C-tenellus_contig10982.2.1 ID=mRNA_C-tenellus_contig10982.2.1|Name=mRNA_C-tenellus_contig10982.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=663bp|location=Sequence derived from alignment at C-tenellus_contig10982:3344..4938- (Choristocarpus tenellus KU2346)
GGAACAGGTGTGTGTGTGAAAGTGAGCAAGAAGGCAGCAGTGGGAGAGGA
AGAGGAACAGGAGATGGAGATCAAGAGAGAGGAGAGGGAGGAAAAGGAGA
AGACAGTGGTTAAGCTCGAGGAGGGTGAAGAGCTGAAGGAGGATAACTCT
CAGGAGGGTGGTGATGGCAGAGACTCAGCGGCTGCTGCTGAGGCTGCTGC
GACTGCCATTGAGGAACTTGAAACGAAGGTGGATGGAGGTATGACTGCCC
TCGCACGAGCAACTGCAGAGGTGTTCATGGGCAAACCGTCTGGCAAAGGA
CTTGCCATCGAACCCCTGAAGACCCCCTGCTCACCACAACCAAGTGCCCA
CGACCTGTTGCAAGTGAAAGGAAGTCGAGATACTCACACTCCTCCTCCTC
CTGCTGCTGCTGATACTCCAGCTTCTCCGTGCAACATCAACACCCTTTCT
TCCCTTGAGTGGCGAGTGAAAGCAGTAGGTGGTGGGGAAGGCATGAACAA
GGCCCTCCAGGATCAATCAGGAGAAAAAAGCACTGTCAAAGAAACCAAGC
GTGTCACAGTAACTGAAGAAGCAGTGTTGGAGATGAGCAATCAGGGTGTA
GCATTCCATCCCCTAATGTGGGACAAAATCTCTAATCGTCGCTTGCAGTG
GTTCGTTGGGCCT
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