mRNA_C-tenellus_contig10977.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10977.2.1
Unique NamemRNA_C-tenellus_contig10977.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10977.2.1 vs. uniprot
Match: A0A6H5KY11_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KY11_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 2.200e-70
Identity = 108/135 (80.00%), Postives = 122/135 (90.37%), Query Frame = 1
Query:   16 EKPPVRMTADSRERVDESLRFLLPQDSNIPYEVTSVVKKVVDDETYFEVMPDWAKNITVGFARMEGATVGVVANNPMYMAGCLDINSSVKG----ARFVRFCDAFNIPLVTFVDVPGFLPGTAQEHGGIIRHGAK 408
            EKPPVR T+DSR+RVDESLR+LLPQDSN+PY++  VV KVVDD TYFE+MPDWA+NITVGFARMEG  VG+VANNPM++AGCLDI+SS K     ARFVRFCDAFNIPL+TFVDVPGFLPGTAQEHGGIIRHG+K
Sbjct:  283 EKPPVRKTSDSRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKARGGAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSK 417          
BLAST of mRNA_C-tenellus_contig10977.2.1 vs. uniprot
Match: A0A836CAR6_9STRA (Propionyl-CoA carboxylase beta chain mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR6_9STRA)

HSP 1 Score: 202 bits (514), Expect = 3.510e-60
Identity = 94/136 (69.12%), Postives = 112/136 (82.35%), Query Frame = 1
Query:    1 PSATSEKPPVRMTADSRERVDESLRFLLPQDSNIPYEVTSVVKKVVDDETYFEVMPDWAKNITVGFARMEGATVGVVANNPMYMAGCLDINSSVKGARFVRFCDAFNIPLVTFVDVPGFLPGTAQEHGGIIRHGAK 408
            P +  E  PVR T D+RER   +LR ++PQD NIPY++  +V KV+DD  ++++MPD+AKNI VGF RMEG TVGVVANNP  +AGCLDINSS KGARFVRFCD+FNIPL+TFVDVPGFLPGT QE+GGIIRHGAK
Sbjct:  262 PLSNREAVPVRSTCDTRERAIPALRRIIPQDPNIPYDMVEIVSKVLDDNNFYQIMPDYAKNIVVGFGRMEGRTVGVVANNPSSLAGCLDINSSTKGARFVRFCDSFNIPLLTFVDVPGFLPGTDQEYGGIIRHGAK 397          
BLAST of mRNA_C-tenellus_contig10977.2.1 vs. uniprot
Match: A0A7S3HMU7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HMU7_9STRA)

HSP 1 Score: 193 bits (491), Expect = 8.340e-59
Identity = 91/136 (66.91%), Postives = 111/136 (81.62%), Query Frame = 1
Query:    1 PSATSEKPPVRMTADSRERVDESLRFLLPQDSNIPYEVTSVVKKVVDDETYFEVMPDWAKNITVGFARMEGATVGVVANNPMYMAGCLDINSSVKGARFVRFCDAFNIPLVTFVDVPGFLPGTAQEHGGIIRHGAK 408
            P +  + P  R T DSR R++ESLRF +P D N+PY++  VVKKVVD+    E+MP++AKNI  GFARMEG TVG+VANNP ++AGCLDI+SS+K ARFVRF D+FNIP+VTFVDVPGFLPGT QEHGGIIR+GAK
Sbjct:   65 PLSNKDTPAPRPTHDSRHRIEESLRFQVPDDPNVPYDMLEVVKKVVDEGVVTEIMPNYAKNIICGFARMEGRTVGIVANNPGHLAGCLDIDSSIKAARFVRFLDSFNIPIVTFVDVPGFLPGTVQEHGGIIRNGAK 200          
BLAST of mRNA_C-tenellus_contig10977.2.1 vs. uniprot
Match: UPI001ACBDBBC (Partial propionyl-CoA carboxylase beta chain n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=UPI001ACBDBBC)

HSP 1 Score: 191 bits (484), Expect = 1.610e-58
Identity = 88/131 (67.18%), Postives = 106/131 (80.92%), Query Frame = 1
Query:   16 EKPPVRMTADSRERVDESLRFLLPQDSNIPYEVTSVVKKVVDDETYFEVMPDWAKNITVGFARMEGATVGVVANNPMYMAGCLDINSSVKGARFVRFCDAFNIPLVTFVDVPGFLPGTAQEHGGIIRHGAK 408
            EK P+R T D+ ER+D SL  L+P + N PY++  ++ K VDD  +FE+ PD AKNI +GFARMEG TVG+VAN PM MAGCLDI SS+K  RFVRFCDAFNIP+VTFVDVPGF+PGTAQE+GGII+HGAK
Sbjct:    3 EKAPIRPTTDAAERLDMSLDTLVPDNPNKPYDIKELIIKTVDDCDFFEIQPDHAKNIVIGFARMEGQTVGIVANQPMVMAGCLDIKSSIKAGRFVRFCDAFNIPIVTFVDVPGFMPGTAQEYGGIIKHGAK 133          
BLAST of mRNA_C-tenellus_contig10977.2.1 vs. uniprot
Match: A0A4R3J9A7_9PROT (Propionyl-CoA carboxylase carboxyltransferase subunit n=1 Tax=Varunaivibrio sulfuroxidans TaxID=1773489 RepID=A0A4R3J9A7_9PROT)

HSP 1 Score: 197 bits (501), Expect = 2.350e-58
Identity = 91/136 (66.91%), Postives = 114/136 (83.82%), Query Frame = 1
Query:    1 PSATSEKPPVRMTADSRERVDESLRFLLPQDSNIPYEVTSVVKKVVDDETYFEVMPDWAKNITVGFARMEGATVGVVANNPMYMAGCLDINSSVKGARFVRFCDAFNIPLVTFVDVPGFLPGTAQEHGGIIRHGAK 408
            P++  EKPP+R T DS  R + SL  L+P + N PY++  V++K+VD+E +FE+ P++A NI +GFARMEG+TVG+VAN PM +AGCLDINSS+K ARFVRFCDAFNIPLVTFVDVPGFLPGTAQE+GGII+HGAK
Sbjct:  246 PASNREKPPLRPTQDSDRRSEMSLDTLVPDNPNKPYDIKEVIEKIVDEEDFFELQPNYAGNIVIGFARMEGSTVGIVANQPMVLAGCLDINSSLKAARFVRFCDAFNIPLVTFVDVPGFLPGTAQEYGGIIKHGAK 381          
BLAST of mRNA_C-tenellus_contig10977.2.1 vs. uniprot
Match: A0A1E5QA07_9PROT (Methylmalonyl-CoA carboxyltransferase n=1 Tax=Magnetovibrio blakemorei TaxID=28181 RepID=A0A1E5QA07_9PROT)

HSP 1 Score: 196 bits (498), Expect = 6.540e-58
Identity = 91/136 (66.91%), Postives = 113/136 (83.09%), Query Frame = 1
Query:    1 PSATSEKPPVRMTADSRERVDESLRFLLPQDSNIPYEVTSVVKKVVDDETYFEVMPDWAKNITVGFARMEGATVGVVANNPMYMAGCLDINSSVKGARFVRFCDAFNIPLVTFVDVPGFLPGTAQEHGGIIRHGAK 408
            P+   EKPPVR TAD  +RV+ SL  L+P + N PY++  +++KVVD+  +FE+MP +A NI +GFARMEG+TVG+VAN PM +AGCLDINSS+K ARFVR+CDAFNIP+VTFVDVPGFLPGT+QEHGGII HGAK
Sbjct:  246 PANNREKPPVRPTADFSDRVEMSLDTLIPDNPNKPYDMKELIEKVVDEGDFFELMPKYAGNILIGFARMEGSTVGIVANQPMVLAGCLDINSSIKAARFVRYCDAFNIPIVTFVDVPGFLPGTSQEHGGIITHGAK 381          
BLAST of mRNA_C-tenellus_contig10977.2.1 vs. uniprot
Match: A0A6J4FDQ3_9PROT (Propionyl-CoA carboxylase beta chain n=23 Tax=Rhodospirillaceae TaxID=41295 RepID=A0A6J4FDQ3_9PROT)

HSP 1 Score: 196 bits (498), Expect = 7.230e-58
Identity = 91/136 (66.91%), Postives = 115/136 (84.56%), Query Frame = 1
Query:    1 PSATSEKPPVRMTADSRERVDESLRFLLPQDSNIPYEVTSVVKKVVDDETYFEVMPDWAKNITVGFARMEGATVGVVANNPMYMAGCLDINSSVKGARFVRFCDAFNIPLVTFVDVPGFLPGTAQEHGGIIRHGAK 408
            P++  EKPPVR TAD+ +R++ SL  L+P ++N PY++  ++ KVVD+  +FEV P +A NI VGFARMEGA+VG+VAN PM +AGCLDI+SS+K ARFVRFCDAFNIP+VTFVDVPGFLPGTAQE+GGII+HGAK
Sbjct:  251 PASNREKPPVRPTADAADRIEMSLDTLIPDNANKPYDMKELILKVVDEGDFFEVQPGYAGNIVVGFARMEGASVGIVANQPMVLAGCLDIDSSIKAARFVRFCDAFNIPVVTFVDVPGFLPGTAQEYGGIIKHGAK 386          
BLAST of mRNA_C-tenellus_contig10977.2.1 vs. uniprot
Match: A0A522LJV8_9BURK (Methylmalonyl-CoA carboxyltransferase (Fragment) n=2 Tax=Burkholderiales TaxID=80840 RepID=A0A522LJV8_9BURK)

HSP 1 Score: 190 bits (482), Expect = 9.720e-58
Identity = 87/136 (63.97%), Postives = 110/136 (80.88%), Query Frame = 1
Query:    1 PSATSEKPPVRMTADSRERVDESLRFLLPQDSNIPYEVTSVVKKVVDDETYFEVMPDWAKNITVGFARMEGATVGVVANNPMYMAGCLDINSSVKGARFVRFCDAFNIPLVTFVDVPGFLPGTAQEHGGIIRHGAK 408
            P +  EK PVR++ D  +RV+ SL  L+P + N PY++  ++ K VDD  +FE+ P++AKNI +GFARMEG TVG+VAN P+ +AGCLDI SS+K ARFVRFCDAFNIP+VTFVDVPGF+PGTAQE+GGIIRHGAK
Sbjct:   36 PLSNREKAPVRLSGDPADRVEPSLDTLVPDNPNQPYDMKELIVKTVDDGDFFELQPEYAKNIVIGFARMEGQTVGIVANQPLVLAGCLDIKSSIKAARFVRFCDAFNIPVVTFVDVPGFMPGTAQEYGGIIRHGAK 171          
BLAST of mRNA_C-tenellus_contig10977.2.1 vs. uniprot
Match: A0A0K6IWZ4_9PROT (Acetyl-CoA carboxylase, carboxyltransferase component n=6 Tax=Tepidiphilus TaxID=203470 RepID=A0A0K6IWZ4_9PROT)

HSP 1 Score: 195 bits (495), Expect = 1.820e-57
Identity = 91/131 (69.47%), Postives = 109/131 (83.21%), Query Frame = 1
Query:   16 EKPPVRMTADSRERVDESLRFLLPQDSNIPYEVTSVVKKVVDDETYFEVMPDWAKNITVGFARMEGATVGVVANNPMYMAGCLDINSSVKGARFVRFCDAFNIPLVTFVDVPGFLPGTAQEHGGIIRHGAK 408
            EKPPVR T+D+ ER++ SL  L+P + N PY++  ++ KVVD+  +FEV PD+AKNI VGF RMEG TVG VAN PM +AGCLDI SS+K ARFVRFCDAFNIP+VTFVDVPGFLPGTAQE+GGII+HGAK
Sbjct:  251 EKPPVRPTSDTAERMEPSLDTLVPDNPNQPYDIKELILKVVDEGDFFEVQPDYAKNIVVGFGRMEGRTVGFVANQPMVLAGCLDIKSSIKAARFVRFCDAFNIPIVTFVDVPGFLPGTAQEYGGIIKHGAK 381          
BLAST of mRNA_C-tenellus_contig10977.2.1 vs. uniprot
Match: A0A520D1F2_9BURK (Acyl-CoA carboxylase subunit beta (Fragment) n=1 Tax=Variovorax sp. TaxID=1871043 RepID=A0A520D1F2_9BURK)

HSP 1 Score: 190 bits (483), Expect = 2.420e-57
Identity = 85/131 (64.89%), Postives = 110/131 (83.97%), Query Frame = 1
Query:   16 EKPPVRMTADSRERVDESLRFLLPQDSNIPYEVTSVVKKVVDDETYFEVMPDWAKNITVGFARMEGATVGVVANNPMYMAGCLDINSSVKGARFVRFCDAFNIPLVTFVDVPGFLPGTAQEHGGIIRHGAK 408
            EKPPVR + D  +R D SL  L+P+++N PY++  ++ KVVDD  +FE+ PD+AKNI +GFARMEG ++G+VAN P+ +AGCLDI SS+K ARFVRFCDAFNIP+VTFVDVPGF+PGT+QE+GGII+HGAK
Sbjct:  142 EKPPVRPSGDPADRADLSLDTLVPENANKPYDMKELITKVVDDGDFFELQPDYAKNIVIGFARMEGQSIGIVANQPLVLAGCLDIKSSIKAARFVRFCDAFNIPVVTFVDVPGFMPGTSQEYGGIIKHGAK 272          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10977.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY11_9PHAE2.200e-7080.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAR6_9STRA3.510e-6069.12Propionyl-CoA carboxylase beta chain mitochondrial... [more]
A0A7S3HMU7_9STRA8.340e-5966.91Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
UPI001ACBDBBC1.610e-5867.18Partial propionyl-CoA carboxylase beta chain n=1 T... [more]
A0A4R3J9A7_9PROT2.350e-5866.91Propionyl-CoA carboxylase carboxyltransferase subu... [more]
A0A1E5QA07_9PROT6.540e-5866.91Methylmalonyl-CoA carboxyltransferase n=1 Tax=Magn... [more]
A0A6J4FDQ3_9PROT7.230e-5866.91Propionyl-CoA carboxylase beta chain n=23 Tax=Rhod... [more]
A0A522LJV8_9BURK9.720e-5863.97Methylmalonyl-CoA carboxyltransferase (Fragment) n... [more]
A0A0K6IWZ4_9PROT1.820e-5769.47Acetyl-CoA carboxylase, carboxyltransferase compon... [more]
A0A520D1F2_9BURK2.420e-5764.89Acyl-CoA carboxylase subunit beta (Fragment) n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10977contigC-tenellus_contig10977:3047..4784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LQL0
PFAMsCarboxyl_trans
Model size412
Max annot lvl2759|Eukaryota
KEGG rclassRC00097,RC00367,RC00609,RC00942
KEGG koko:K01966,ko:K01969
KEGG ReactionR01859,R04138
KEGG Pathwayko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00630,map00640,map01100,map01120,map01130,map01200
KEGG ModuleM00036,M00373,M00741
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.16e-75
EggNOG OGsCOG4799@1|root,KOG0540@2759|Eukaryota
EC2.1.3.15,6.4.1.3,6.4.1.4
DescriptionCoA carboxylase activity
Cds size411
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789157.417337-CDS-C-tenellus_contig10977:3047..31731680789157.417337-CDS-C-tenellus_contig10977:3047..3173Choristocarpus tenellus KU2346CDSC-tenellus_contig10977 3048..3173 -
1680789157.434302-CDS-C-tenellus_contig10977:4021..41741680789157.434302-CDS-C-tenellus_contig10977:4021..4174Choristocarpus tenellus KU2346CDSC-tenellus_contig10977 4022..4174 -
1680789157.444731-CDS-C-tenellus_contig10977:4652..47841680789157.444731-CDS-C-tenellus_contig10977:4652..4784Choristocarpus tenellus KU2346CDSC-tenellus_contig10977 4653..4784 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10977.2.1prot_C-tenellus_contig10977.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10977 3048..4784 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10977.2.1

>prot_C-tenellus_contig10977.2.1 ID=prot_C-tenellus_contig10977.2.1|Name=mRNA_C-tenellus_contig10977.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=137bp
PSATSEKPPVRMTADSRERVDESLRFLLPQDSNIPYEVTSVVKKVVDDET
YFEVMPDWAKNITVGFARMEGATVGVVANNPMYMAGCLDINSSVKGARFV
RFCDAFNIPLVTFVDVPGFLPGTAQEHGGIIRHGAKA
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mRNA from alignment at C-tenellus_contig10977:3047..4784-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10977.2.1 ID=mRNA_C-tenellus_contig10977.2.1|Name=mRNA_C-tenellus_contig10977.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1738bp|location=Sequence derived from alignment at C-tenellus_contig10977:3047..4784- (Choristocarpus tenellus KU2346)
CCCTCTGCAACCTCAGAGAAACCCCCAGTAAGGATGACGGCAGACTCTAG AGAGCGGGTGGATGAGTCGCTACGGTTCTTGCTCCCACAGGACTCCAACA TACCCTACGAAGTGACAAGTGTCGTCAAGAAGGTACTCTTCTTGATGGAC GTCACTCCCCTGATCCTACCCTTTGAACAGATTGGGCCCTGCCAGGGGTA AATGGTTTGCAGAGATGGGTCCAGTAGTATCCGACCCGGTGTGGGGTTTG ATTGCAGTGCAGAGTAATTGTGGGGGGGTTAAGCTGAACGTTCTCATTGT TGCTGCAGGAGGGTGGACTTGTTTTTGCAATGAAATCTGTCGTACTATTG TGTGATGTGGCGTGGGGTGAGGGGCTGCTGTACTTTGCTGTGTTGATATT GGATGTCATGCATTTGTCATTCGCCTGAAGTATGTTTTTGCTATCATGGA GGAGGACAAGTGTACTTCACAGGACATCGCCCTGACCTTTTTTTCAAGAG CTTTCTACTTTACTCTGCATATGCAAAGCTACCTTTAAGCAGAATGCTCT GCAAGAGAGAATTGCTTATAGACGCTAGTCATGCTATGCACACTGTCCCC TATTGTCCAGGTGGTGGATGATGAAACATACTTTGAGGTGATGCCCGATT GGGCCAAGAATATCACAGTTGGATTCGCACGAATGGAGGGAGCCACAGTG GGGGTTGTGGCCAACAACCCCATGTACATGGCAGGTTGTTTGGACATCAA TTCCTCTGTCAAGGTGAGACCATTAGATTGTGTACCTTGATGCATCATCC ACCAGAAGTATGGGATGCTCTTGTGTACTATGGGTTATCATCTGAAGTGG AACACATGTGTGATATCACGCAAAGCATGACTTCCTCTTGGTGATTAAAG GTTGTATGTGATTGTATTCTGTTGATAGTGATCCGCCAATCTCATGCTGC ATTCTATGGAGGAATGTATGGTGGAGTACACCTTAACGTTGCAGAGTTCA ATGAGATGCAGAGTTCCCACGATCCTCTGGTATATTCAGGAAAAAAATTG TCAACATTCCTGCAAGTAAAAGGCATATTTTTCTTTTTTGAAAATCCGCT GTGGGTTGGGGTAGGCGTCCTTTGTGGTTTTGAGTTAAATTGTCCTGTGG GCTGTAGTCAACCAGGCCCTCTTTACCCCCCCAAGTCATACCTCCTTACC TTGGCATCCACTTTTGTTAGATTGTGCTCTTTTGAACTTTGATGTGTATT TTGGTAGCGATTTATCCCCTCCATCGTAGTTAAAACCCAAGATTCCTTCC TTCCTTCCTTGCTTCCTTGCTTCCTTGCTTTCTCCCTTTCCTCCCCCCCC CCCGCTCACTGTGTTCTCAGCCTTTCACAGCACACATGCACATGAGAACA TAGTGAGTAAACACATGACCCACTGCCTCTTGATGTTTATCCGAAGGCAG GTCCTTTCAACTCACTTTCTTCTAATGTCTCAAGGCAACGCAGGTATCGC TTGAAGTGCCCCCCTCTTCCTCAACGCCATGTTTCATTCATTCTCAATGA CTTGTACTCTCACTTCTCGTCCCAATTTGACTCTACTTGACTCTGCTGGA CTCTGCTTAAGGGAGCACGGTTTGTGCGATTTTGTGATGCATTTAACATC CCCTTGGTGACGTTTGTGGATGTGCCGGGATTCCTGCCGGGGACGGCACA AGAGCATGGGGGAATCATCCGACATGGAGCCAAGGCAT
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Coding sequence (CDS) from alignment at C-tenellus_contig10977:3047..4784-

>mRNA_C-tenellus_contig10977.2.1 ID=mRNA_C-tenellus_contig10977.2.1|Name=mRNA_C-tenellus_contig10977.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=411bp|location=Sequence derived from alignment at C-tenellus_contig10977:3047..4784- (Choristocarpus tenellus KU2346)
CCCTCTGCAACCTCAGAGAAACCCCCAGTAAGGATGACGGCAGACTCTAG
AGAGCGGGTGGATGAGTCGCTACGGTTCTTGCTCCCACAGGACTCCAACA
TACCCTACGAAGTGACAAGTGTCGTCAAGAAGGTGGTGGATGATGAAACA
TACTTTGAGGTGATGCCCGATTGGGCCAAGAATATCACAGTTGGATTCGC
ACGAATGGAGGGAGCCACAGTGGGGGTTGTGGCCAACAACCCCATGTACA
TGGCAGGTTGTTTGGACATCAATTCCTCTGTCAAGGGAGCACGGTTTGTG
CGATTTTGTGATGCATTTAACATCCCCTTGGTGACGTTTGTGGATGTGCC
GGGATTCCTGCCGGGGACGGCACAAGAGCATGGGGGAATCATCCGACATG
GAGCCAAGGCA
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