mRNA_C-tenellus_contig10969.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10969.2.1
Unique NamemRNA_C-tenellus_contig10969.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10969.2.1 vs. uniprot
Match: D7FKZ1_ECTSI (Oxoglutarate dehydrogenase E1 subunit, C-terminal n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKZ1_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 1.010e-43
Identity = 65/87 (74.71%), Postives = 77/87 (88.51%), Query Frame = 1 
Query:    1 GRTDIAIARVEQISPFPFDRVAEEAAQYPNAEVCWVQEEPKNMGAWTFVNPCIETSTRDINNAERRPRYIGRTTSAAPATGLSKVRA 261
            GRTDIAIARVEQ++PFPFD+VA++  +Y NAEVCW QEEPKNMGAW+FV PCI+TSTR +NN ER+PRYIGR T+AAPATG SK+ A
Sbjct:   15 GRTDIAIARVEQVTPFPFDKVAKQIKRYSNAEVCWAQEEPKNMGAWSFVRPCIKTSTRKLNNMERKPRYIGRPTAAAPATGHSKLHA 101
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BLAST of mRNA_C-tenellus_contig10969.2.1 vs. uniprot
Match: A0A835Z9M1_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9M1_9STRA)

HSP 1 Score: 137 bits (346), Expect = 7.170e-36
Identity = 64/85 (75.29%), Postives = 76/85 (89.41%), Query Frame = 1 
Query:    1 GRTDIAIARVEQISPFPFDRVAEEAAQYPNAEVCWVQEEPKNMGAWTFVNPCIETSTRDINNAERRPRYIGRTTSAAPATGLSKV 255
            GR DIAIARVEQI+PFPFDRVAEEAA+YP A+V WVQEEPKNMGA+++V P + T+TRDINN E+RP Y+GR TSAAPATG++KV
Sbjct:  904 GRNDIAIARVEQIAPFPFDRVAEEAAKYPEADVLWVQEEPKNMGAYSYVMPRMMTATRDINNHEKRPIYVGRDTSAAPATGMAKV 988
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BLAST of mRNA_C-tenellus_contig10969.2.1 vs. uniprot
Match: A0A3L6UQ42_9STRA (Transket_pyr domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6UQ42_9STRA)

HSP 1 Score: 120 bits (302), Expect = 9.640e-32
Identity = 56/85 (65.88%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    1 GRTDIAIARVEQISPFPFDRVAEEAAQYPNAEVCWVQEEPKNMGAWTFVNPCIETSTRDINNAERRPRYIGRTTSAAPATGLSKV 255
            G  DIA+ RVEQI+PFPFD+VAE+AA+Y NAE+ WVQEEP+NMG WT+V+P IET+   I++  RRP YIGR TSAAPATG   V
Sbjct:  177 GINDIALVRVEQIAPFPFDKVAEQAAKYKNAEIKWVQEEPENMGFWTYVSPRIETALTKISHDSRRPTYIGRPTSAAPATGYGAV 261
[Close]
BLAST of mRNA_C-tenellus_contig10969.2.1 vs. uniprot
Match: A0A7S1BUA0_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BUA0_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.500e-31
Identity = 55/85 (64.71%), Postives = 70/85 (82.35%), Query Frame = 1 
Query:    1 GRTDIAIARVEQISPFPFDRVAEEAAQYPNAEVCWVQEEPKNMGAWTFVNPCIETSTRDINNAERRPRYIGRTTSAAPATGLSKV 255
            GRTD+A+ R+EQISPF FDRVAE+   YPNAE+ W Q+EPKNMGA+++V+P I T+TRD+N  E+R RY+GR  SAAPATG+ KV
Sbjct:  964 GRTDVALVRLEQISPFAFDRVAEQVKLYPNAEIVWAQQEPKNMGAYSYVDPRIMTATRDLNGEEKRARYVGRKVSAAPATGMPKV 1048
[Close]
BLAST of mRNA_C-tenellus_contig10969.2.1 vs. uniprot
Match: A0A7S0AIH5_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AIH5_9STRA)

HSP 1 Score: 119 bits (297), Expect = 3.000e-31
Identity = 52/85 (61.18%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:    1 GRTDIAIARVEQISPFPFDRVAEEAAQYPNAEVCWVQEEPKNMGAWTFVNPCIETSTRDINNAERRPRYIGRTTSAAPATGLSKV 255
            GRTD+A+ R+EQI+PFPFDR+A     YPNAEV + Q+EPKNMG +++  P I T+TR+IN  E+RPRY+GR  SAAPATG+ KV
Sbjct:  149 GRTDVALVRIEQIAPFPFDRIASNVKWYPNAEVIFAQQEPKNMGPYSYCLPRIMTATREINGDEKRPRYVGRAVSAAPATGMGKV 233
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BLAST of mRNA_C-tenellus_contig10969.2.1 vs. uniprot
Match: A0A7S1D6S6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D6S6_CYCTE)

HSP 1 Score: 115 bits (289), Expect = 2.270e-30
Identity = 50/85 (58.82%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:    1 GRTDIAIARVEQISPFPFDRVAEEAAQYPNAEVCWVQEEPKNMGAWTFVNPCIETSTRDINNAERRPRYIGRTTSAAPATGLSKV 255
            G  ++A+ R+EQI+PF FDRVA++AA YPNAEV W Q+EPKNMGA+ +V P I T+TR++N+ E+R R++GR  SAAPATG+ K+
Sbjct:  116 GMDNVALVRLEQIAPFAFDRVAQQAALYPNAEVVWAQQEPKNMGAYAYVMPRIMTATRELNSNEKRARFVGRPVSAAPATGMGKI 200
[Close]
BLAST of mRNA_C-tenellus_contig10969.2.1 vs. uniprot
Match: A0A7S1ZPM0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZPM0_TRICV)

HSP 1 Score: 116 bits (290), Expect = 3.130e-30
Identity = 51/85 (60.00%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:    1 GRTDIAIARVEQISPFPFDRVAEEAAQYPNAEVCWVQEEPKNMGAWTFVNPCIETSTRDINNAERRPRYIGRTTSAAPATGLSKV 255
             R D+AI R+EQI+PF FDRVA+   +Y NAEV W Q+EPKNMGA+++V P + T+TR+IN  E+RPRY+GR  SAAPATG+ K+
Sbjct:  144 SRVDVAIVRLEQIAPFAFDRVAQACNKYNNAEVVWAQQEPKNMGAYSYVLPRVMTATREINTDEKRPRYVGRPVSAAPATGMGKI 228
[Close]
BLAST of mRNA_C-tenellus_contig10969.2.1 vs. uniprot
Match: A0A1W0A9U0_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9U0_9STRA)

HSP 1 Score: 121 bits (304), Expect = 3.340e-30
Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:   10 DIAIARVEQISPFPFDRVAEEAAQYPNAEVCWVQEEPKNMGAWTFVNPCIETSTRDINNAERRPRYIGRTTSAAPATGLSKV 255
            D+A+ RVEQI+PFPFD+VAE AA+YPNA++ WVQEEP+NMG WT+VNP IET+ + IN   RRP YIGR  SAAPATG   V
Sbjct:  921 DVALVRVEQIAPFPFDKVAEFAAKYPNADIKWVQEEPENMGFWTYVNPRIETALKTINKDSRRPSYIGRDASAAPATGFHAV 1002
[Close]
BLAST of mRNA_C-tenellus_contig10969.2.1 vs. uniprot
Match: A0A1E7FW89_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FW89_9STRA)

HSP 1 Score: 121 bits (304), Expect = 3.350e-30
Identity = 55/83 (66.27%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:    7 TDIAIARVEQISPFPFDRVAEEAAQYPNAEVCWVQEEPKNMGAWTFVNPCIETSTRDINNAERRPRYIGRTTSAAPATGLSKV 255
            TD+A+ R+EQI+PF FDRVAE AA+Y NAEV W Q+EPKNMG +++VNP I T+TR+IN  E RPRY+GR  SAAPATG+S V
Sbjct:  943 TDVALVRIEQIAPFAFDRVAESAAKYCNAEVIWAQQEPKNMGPYSYVNPRIMTATREINGKEMRPRYVGRAVSAAPATGMSLV 1025
[Close]
BLAST of mRNA_C-tenellus_contig10969.2.1 vs. uniprot
Match: A0A397B104_9STRA (Transket_pyr domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B104_9STRA)

HSP 1 Score: 120 bits (302), Expect = 6.010e-30
Identity = 56/85 (65.88%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    1 GRTDIAIARVEQISPFPFDRVAEEAAQYPNAEVCWVQEEPKNMGAWTFVNPCIETSTRDINNAERRPRYIGRTTSAAPATGLSKV 255
            G  DIA+ RVEQI+PFPFD+VAE+AA+Y NAE+ WVQEEP+NMG WT+V+P IET+   I++  RRP YIGR TSAAPATG   V
Sbjct:  639 GINDIALVRVEQIAPFPFDKVAEQAAKYKNAEIKWVQEEPENMGFWTYVSPRIETALTKISHDSRRPTYIGRPTSAAPATGYGAV 723
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10969.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKZ1_ECTSI1.010e-4374.71Oxoglutarate dehydrogenase E1 subunit, C-terminal ... [more]
A0A835Z9M1_9STRA7.170e-3675.29Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A3L6UQ42_9STRA9.640e-3265.88Transket_pyr domain-containing protein n=1 Tax=Aph... [more]
A0A7S1BUA0_9STRA1.500e-3164.71Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A7S0AIH5_9STRA3.000e-3161.18Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S1D6S6_CYCTE2.270e-3058.82Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S1ZPM0_TRICV3.130e-3060.00Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1W0A9U0_9STRA3.340e-3067.07Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A1E7FW89_9STRA3.350e-3066.27Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A397B104_9STRA6.010e-3065.88Transket_pyr domain-containing protein n=2 Tax=Aph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10969contigC-tenellus_contig10969:4129..4921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog325452.fgenesh_scip_prom.46568.7587
PFAMs2-oxogl_dehyd_N,E1_dh,OxoGdeHyase_C,Transket_pyr
Model size264
Max annot lvl4776|Peronosporales
KEGG rclassRC00004,RC00027,RC00627,RC02743,RC02833,RC02883
KEGG koko:K00164
KEGG ReactionR00621,R01933,R01940,R03316,R08549
KEGG Pathwayko00020,ko00310,ko00380,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map00380,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011,M00032
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.95e-31
EggNOG OGsCOG0567@1|root,KOG0450@2759|Eukaryota,3QE1R@4776|Peronosporales
EC1.2.4.2
Description2-oxoglutarate dehydrogenase N-terminus
Cds size264
COG categoryG
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.9487436-CDS-C-tenellus_contig10969:4128..42961680789156.9487436-CDS-C-tenellus_contig10969:4128..4296Choristocarpus tenellus KU2346CDSC-tenellus_contig10969 4129..4296 -
1680789156.9619374-CDS-C-tenellus_contig10969:4825..49211680789156.9619374-CDS-C-tenellus_contig10969:4825..4921Choristocarpus tenellus KU2346CDSC-tenellus_contig10969 4826..4921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10969.2.1prot_C-tenellus_contig10969.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10969 4129..4921 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10969.2.1

>prot_C-tenellus_contig10969.2.1 ID=prot_C-tenellus_contig10969.2.1|Name=mRNA_C-tenellus_contig10969.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=88bp
GRTDIAIARVEQISPFPFDRVAEEAAQYPNAEVCWVQEEPKNMGAWTFVN
PCIETSTRDINNAERRPRYIGRTTSAAPATGLSKVRA*
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mRNA from alignment at C-tenellus_contig10969:4129..4921-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10969.2.1 ID=mRNA_C-tenellus_contig10969.2.1|Name=mRNA_C-tenellus_contig10969.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=793bp|location=Sequence derived from alignment at C-tenellus_contig10969:4129..4921- (Choristocarpus tenellus KU2346)
GGCCGCACAGACATCGCCATTGCTCGCGTGGAGCAAATCTCTCCCTTCCC
CTTCGATCGTGTGGCTGAGGAGGCCGCCCAGTACCCCAATGCCGAGGTGT
GTATTAACTGAGGACTATAGCACTAGCTCTTCTTTTTCCCCCTCCAAGGG
TGTAAAATTATTTTTATTGTTTTTGTTGGTGTAGCTTTTCCTGGTCATTA
TGATAAGTGTAAGGTTTCTCTCTCCAGCGTGTCCTGGAAGTAGTGCACAG
TTCCTCTTGTTTCTGTATGTATTGTTTCTATATATATATACTTTCTCCTG
GTTCCTGTCAAGTGTTGTCGTCTTTTTCATGGCCTTGTACCCAATGCCGT
TCAGGAAGGTGCCTTGCCCTTCTTCGTGCAATATTGTAGCATTCACATAT
TAAGGGGGGGGGGGGGATGGGGGGGGTATTTTCCCTTAATTCCTGCCCTT
TTGCCCTCATGTTTGCCAGGGGAGAGGACTATGATTCTTGGTTCCAAAAC
AATTACCGTTCGTGCATGGTATCCATCCACGAACCTTCACTCTACATCAA
CAATTCTGTCCTATGGTATTTGATGGTCTAACACCCCCAAGCCTTTCAAC
ACCATGCACATGAAAACATGAAAAGGTGTGCTGGGTCCAGGAGGAGCCCA
AGAACATGGGTGCCTGGACGTTTGTCAACCCCTGCATTGAAACCTCTACC
AGGGACATCAACAATGCAGAGAGGCGACCGCGCTACATTGGACGGACCAC
ATCTGCAGCCCCAGCTACTGGCCTGAGCAAGGTGAGGGCCTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10969:4129..4921-

>mRNA_C-tenellus_contig10969.2.1 ID=mRNA_C-tenellus_contig10969.2.1|Name=mRNA_C-tenellus_contig10969.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=264bp|location=Sequence derived from alignment at C-tenellus_contig10969:4129..4921- (Choristocarpus tenellus KU2346)
GGCCGCACAGACATCGCCATTGCTCGCGTGGAGCAAATCTCTCCCTTCCC
CTTCGATCGTGTGGCTGAGGAGGCCGCCCAGTACCCCAATGCCGAGGTGT
GCTGGGTCCAGGAGGAGCCCAAGAACATGGGTGCCTGGACGTTTGTCAAC
CCCTGCATTGAAACCTCTACCAGGGACATCAACAATGCAGAGAGGCGACC
GCGCTACATTGGACGGACCACATCTGCAGCCCCAGCTACTGGCCTGAGCA
AGGTGAGGGCCTAG
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