mRNA_C-tenellus_contig10968.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10968.1.1
Unique NamemRNA_C-tenellus_contig10968.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10968.1.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.220e-33
Identity = 59/70 (84.29%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    1 AMRAKADGKPLGFVFMSVDAATQISHALPALYPPTHGGDRGYSERQKIMAAHVEGQFAEVFFTPQNLGGG 210
            AMRAKADGKPL FVFMS+DAA   SHALPA+YPPTHGGDRGYSERQKIMA H+EGQF EV+FTPQ LGGG
Sbjct:  117 AMRAKADGKPLNFVFMSIDAANSTSHALPAIYPPTHGGDRGYSERQKIMAVHIEGQFVEVYFTPQYLGGG 186
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10968.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUU1_9PHAE2.220e-3384.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10968contigC-tenellus_contig10968:3902..4330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size210
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.8905628-CDS-C-tenellus_contig10968:3901..39921680789156.8905628-CDS-C-tenellus_contig10968:3901..3992Choristocarpus tenellus KU2346CDSC-tenellus_contig10968 3902..3992 -
1680789156.9007106-CDS-C-tenellus_contig10968:4211..43271680789156.9007106-CDS-C-tenellus_contig10968:4211..4327Choristocarpus tenellus KU2346CDSC-tenellus_contig10968 4212..4327 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.9134107-UTR-C-tenellus_contig10968:4327..43301680789156.9134107-UTR-C-tenellus_contig10968:4327..4330Choristocarpus tenellus KU2346UTRC-tenellus_contig10968 4328..4330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10968.1.1prot_C-tenellus_contig10968.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10968 3902..4327 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10968.1.1

>prot_C-tenellus_contig10968.1.1 ID=prot_C-tenellus_contig10968.1.1|Name=mRNA_C-tenellus_contig10968.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=69bp
MRAKADGKPLGFVFMSVDAATQISHALPALYPPTHGGDRGYSERQKIMAA
HVEGQFAEVFFTPQNLGGG
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mRNA from alignment at C-tenellus_contig10968:3902..4330-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10968.1.1 ID=mRNA_C-tenellus_contig10968.1.1|Name=mRNA_C-tenellus_contig10968.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=429bp|location=Sequence derived from alignment at C-tenellus_contig10968:3902..4330- (Choristocarpus tenellus KU2346)
GCCATGCGGGCCAAAGCCGACGGTAAACCTCTCGGCTTCGTGTTCATGTC
TGTAGACGCGGCGACCCAGATATCCCACGCCCTCCCAGCACTTTACCCAC
CTACCCACGGAGGAGACAGGTAACCACACGCACGCATAGTCCATTTGTCA
ACAAGTTTGCAGCCACAAGCAGAAGAGAATAGACCACCCTGTTTTATTGA
ACGAGTGAGTGCAAAGTCCCAACAAATAACCGCCAAAACAGACGCACATA
ATTCCACTACCTATTCCGTTCATCATGATGATGACGCCCCGTAACACCTT
TCTTTACACCTTTCTTTGGTTCATGTCCTTAATATCAGGGGCTACTCCGA
GCGCCAGAAGATCATGGCCGCACACGTCGAAGGCCAGTTCGCGGAGGTGT
TCTTTACTCCTCAAAATCTTGGAGGAGGT
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Coding sequence (CDS) from alignment at C-tenellus_contig10968:3902..4330-

>mRNA_C-tenellus_contig10968.1.1 ID=mRNA_C-tenellus_contig10968.1.1|Name=mRNA_C-tenellus_contig10968.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=207bp|location=Sequence derived from alignment at C-tenellus_contig10968:3902..4330- (Choristocarpus tenellus KU2346)
ATGCGGGCCAAAGCCGACGGTAAACCTCTCGGCTTCGTGTTCATGTCTGT
AGACGCGGCGACCCAGATATCCCACGCCCTCCCAGCACTTTACCCACCTA
CCCACGGAGGAGACAGGGGCTACTCCGAGCGCCAGAAGATCATGGCCGCA
CACGTCGAAGGCCAGTTCGCGGAGGTGTTCTTTACTCCTCAAAATCTTGG
AGGAGGT
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