mRNA_C-tenellus_contig10954.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10954.1.1
Unique NamemRNA_C-tenellus_contig10954.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10954.1.1 vs. uniprot
Match: D8LFA4_ECTSI (PX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA4_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 4.010e-24
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 3 
Query:  540 PVEYVAEFTRGGWIWRTSHRYRDWLALKDEIQTEFGTRHLPPKSLFPEKQNMGDILVNVIESCQGCRADCG-PLGLLEERRRGLQVSSKKFL 812
            P  Y   +TRGGWIWRTSHRY DWL+LK+ +Q +FG R+LP   LFP+K+++G I+V V+ SCQGCR   G  +G LEERRRGLQ    + L
Sbjct:   48 PTMYDVAYTRGGWIWRTSHRYSDWLSLKERLQADFGKRNLPDDELFPQKEDVGAIIVKVLSSCQGCREGGGRAVGHLEERRRGLQAYFSQVL 139
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BLAST of mRNA_C-tenellus_contig10954.1.1 vs. uniprot
Match: A0A6H5KH88_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH88_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.550e-22
Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = 3 
Query:  495 SATLRVTDYITSAQRPVEYVAEFTRGGWIWRTSHRYRDWLALKDEIQTEFGTRHLPPKSLFPEKQNMGDILVNVIESCQGCR-ADCGPLGLLEERRRGLQVSSKKFL 812
            +AT    + + ++  P  Y A +TRGGWIWRTSHRY DWL+LK+ ++ +FG R+LP   LFP+K+++G I+  V+ SCQGCR      +G +EERRRGLQ    + L
Sbjct:   40 AATEPRPNLLATSAGPTMYEAVYTRGGWIWRTSHRYSDWLSLKERLRADFGKRNLPDDELFPQKEDVGAIIGKVLSSCQGCREGGSRAVGHIEERRRGLQAYFSQVL 146
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10954.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFA4_ECTSI4.010e-2456.52PX domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KH88_9PHAE1.550e-2247.66PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10954contigC-tenellus_contig10954:2489..5327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1639
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionPhox homologous domain
Ec32 orthologEc-01_004240.1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.389005-UTR-C-tenellus_contig10954:2488..29341680789156.389005-UTR-C-tenellus_contig10954:2488..2934Choristocarpus tenellus KU2346UTRC-tenellus_contig10954 2489..2934 +
1680789156.4425974-UTR-C-tenellus_contig10954:4503..53271680789156.4425974-UTR-C-tenellus_contig10954:4503..5327Choristocarpus tenellus KU2346UTRC-tenellus_contig10954 4504..5327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.4048142-CDS-C-tenellus_contig10954:2934..30651680789156.4048142-CDS-C-tenellus_contig10954:2934..3065Choristocarpus tenellus KU2346CDSC-tenellus_contig10954 2935..3065 +
1680789156.4139864-CDS-C-tenellus_contig10954:3508..36261680789156.4139864-CDS-C-tenellus_contig10954:3508..3626Choristocarpus tenellus KU2346CDSC-tenellus_contig10954 3509..3626 +
1680789156.432654-CDS-C-tenellus_contig10954:4383..45031680789156.432654-CDS-C-tenellus_contig10954:4383..4503Choristocarpus tenellus KU2346CDSC-tenellus_contig10954 4384..4503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10954.1.1prot_C-tenellus_contig10954.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10954 2935..4503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10954.1.1

>prot_C-tenellus_contig10954.1.1 ID=prot_C-tenellus_contig10954.1.1|Name=mRNA_C-tenellus_contig10954.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=123bp
MKAKGEKAEEKAKVMTSATLRVTDYITSAQRPVEYVAEFTRGGWIWRTSH
RYRDWLALKDEIQTEFGTRHLPPKSLFPEKQNMGDILVNVIESCQGCRAD
CGPLGLLEERRRGLQVSSKKFL*
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mRNA from alignment at C-tenellus_contig10954:2489..5327+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10954.1.1 ID=mRNA_C-tenellus_contig10954.1.1|Name=mRNA_C-tenellus_contig10954.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2839bp|location=Sequence derived from alignment at C-tenellus_contig10954:2489..5327+ (Choristocarpus tenellus KU2346)
ACCAAGTGTGAGTGTGAGACCTCATCAGCAAGTTGCTGGATATTGTAGCT
CGGAAGCAACGATTGGCATCTTCTAGGAAACAGGCATGTCTGTTAACCAC
TCCCTCCACACATAGTTTCCATCTCCTTCAAACTATCTGGTCGATGCATC
TTTGATCCCAAAAATCCTACGGACACTTCTAGATCACCTCAACAGCCCGC
CTCTCGGTTCGATGACACGTTGATCAAAATGTGTATTTTACGTCTTTGAG
TTGTCGAGAAATAGTAAGGATTGTCCTGCAGGACACTCTTCGTATCTGCT
TTTCAGGGATAGCATTGCCACTCCTCACGTGTGAAACGAAGGGGCGTTAC
TTTTCCCAGATCTACCCAATACTGACTGCTGAGTTCATTCGTCGTTTTCG
AAGGACAGCGAGAACCTGGGCTGTACCATAGAAGCAGTCGGAGGTGATGA
AGGCAAAGGGTGAAAAGGCTGAGGAGAAGGCGAAGGTTATGACCTCCGCC
ACGCTCAGAGTTACAGACTACATAACTTCGGCACAGAGACCTGTCGAATA
TGTGGCGGAGTTTACTAGAGGTGGTTGGTAAGAATCTGTCGTATTGAAAT
GACCACGGTGGGACCCCATTAAAGACTTGAACTCCCAGAGTATCAGTGCT
TGGCGGTAATGCCATCCAAACCTTCATGTGTTCATTCAGGACAGTGTGCT
CTTGAATCGTAGATCTCGTCATTTTTTCTCCACCCCTCCCACTGGCACTT
CGTGCCCTTTACTGCATTTTTTCTTCTATATCACAACGCATGCTCTCATT
ACAACGTTGCTTTGACAAAGGTTTATTCTGCAAGTAGATAGCTACAATGA
ACCCAAAGAAATTTTTTGCCCTTGTGCCCAATCTTTGGCAGAGCATTTCT
GAGCGCTCCTAATACCGAGCACTCCTGATACAGAGATGCGGTGGCGTACC
TCTTGTCCATTCTGTATATCCTTTAGTGTAAACTATTTTGCCTTTGATGC
AACATTTCTTCCTATGACAGGATATGGCGGACCTCGCACCGCTATAGAGA
TTGGCTGGCTCTGAAGGATGAAATCCAGACCGAGTTCGGAACGCGCCATC
TCCCGCCTAAGTCTTTATTTCCGGAGAAGCAAAATATGGTGACGATGAGT
ATGTTTTGAGGGGGTATCAATACCTTTTAGCTTTGGATGTTCCCGTTTAT
CACTCTGTAGTGATTTCTCGGAGTATTCTGGTGGATACTCTGGCTAGTCT
TTGTTGCTTGATGATGAGTTGTTCCCCAAAGGGGACACGGGTACAATGGT
GATACAGTCAATTATGTCCATTTCTCCCAATCCTGTTGATTTTATTGCAT
GTGACTATTGAGTGGGGTTCATTGAATTATCACTTCAATGGTGCAACGCA
TGTGCCCTTGCAAAACATTGTTGGTATCCCACCTAAACGCCGAGCATAAT
ATGTTACATTTTTTCCAATACTTTGACCTGTTCTCATATGGTAAAAGTAT
TCATCGAGGAGTTTTAGCCCAAAATGCCTCGAATATAGCTCCTCTTCTTT
TACCGCAGAGCTGGAGAATGTTGATGCACACCAGAGGTGGGTGTATGGAC
GCTCTGGGTGCAATAGTCCTATATATATATATATATATATATATATAGCC
TTCATTCATGAGGTTGCTATGTTTGCTTGCCATCTCGAACCTCAATTGTT
GCTCCTCCAGGACTCACCGATCGTGTTTTCCGTGCAAGTAGAAGTCTGAT
CATTAAGGCATGTTTTGCGTCAAAATTGATAGTATTGCTCTTCACAGCAG
CTAGATCATTAAGGCATGTGCTCTATTCCACACCCCTCCAAAGTGTAACC
AAACTTAGCTCCGCTCTGTACACATGGGCTGGCTCACTTGCACAGGGGGA
TATATTGGTGAATGTGATCGAGTCATGCCAGGGCTGCAGGGCTGACTGTG
GGCCGTTGGGTTTGCTTGAGGAGCGCAGGCGAGGCCTCCAGGTGAGTTCA
AAGAAGTTTCTGTGAAAGTTCCTGATGTTGGGGGAGGGGGAGGAGTTGGG
TCAGTGCAAGAAAAGCTGTGAGAAGAAGGGGTCTTGGTAGTGCTCTGAAA
TGAAAAAAAAGCATTTGTAAGTGCAAGTTATGTCGGCTCAAAATAAATAA
ATAAATAAAAATGTGCTAAACTTGATAAGGACTAAATGGCATGCACATCT
GTAGAGCCCGGTGGCGCTCCGTGGCACTTGGTGACCAGACAATACAGCGT
GCATACCCACCATGAGAAACAACCCATATTTGTTTTGTTTTGTTTTCTTA
TTTTTTCAGTTTCGATTGTTGCACTTTGTAAAACTCGACCTTGAGTGAAA
GTATCTTATTAAGAGAGGGTATGAGTTTCGCCCTGTTCGTCCATTTGGGG
CTTGGCTTCCCGCGGGATTTTTATTTCATTTTACCTATTCTGAAACATAA
CATGTTTTGGAGTAGGTAAGACGTGTACGTTATTAAAAGGTGTGTCCGGA
ACAAGGATGGATATTGACATCTCCTAATGAACAGGATAGACAAGGTTACA
TCAAAATTGCAACATTGGATTTTGGCCCCCAAATGGACACGGCTCTCTAC
CCTCTAAGATACTTTGGTTCTCTTGGGTCAGGTGGTAACATCTTGTTTGA
TAGTAGTTGGGTTACTGAGCCGTGGTTTGGGGTTACTGCAGCCTCTTCAA
TCCCCCGCAGGTCATGGCACGCTGGGCTATTATCTATATCACATTTTGAA
TTTTGAATTTCCTTCCAGAGCGATTCGACTTTTGCAACCACTCGGAGTAG
ATCTTCCGAGAGATCATTCTGGCTCATAGTATCTTGGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10954:2489..5327+

>mRNA_C-tenellus_contig10954.1.1 ID=mRNA_C-tenellus_contig10954.1.1|Name=mRNA_C-tenellus_contig10954.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=369bp|location=Sequence derived from alignment at C-tenellus_contig10954:2489..5327+ (Choristocarpus tenellus KU2346)
ATGAAGGCAAAGGGTGAAAAGGCTGAGGAGAAGGCGAAGGTTATGACCTC
CGCCACGCTCAGAGTTACAGACTACATAACTTCGGCACAGAGACCTGTCG
AATATGTGGCGGAGTTTACTAGAGGTGGTTGGATATGGCGGACCTCGCAC
CGCTATAGAGATTGGCTGGCTCTGAAGGATGAAATCCAGACCGAGTTCGG
AACGCGCCATCTCCCGCCTAAGTCTTTATTTCCGGAGAAGCAAAATATGG
GGGATATATTGGTGAATGTGATCGAGTCATGCCAGGGCTGCAGGGCTGAC
TGTGGGCCGTTGGGTTTGCTTGAGGAGCGCAGGCGAGGCCTCCAGGTGAG
TTCAAAGAAGTTTCTGTGA
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