mRNA_C-tenellus_contig10953.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10953.1.1
Unique NamemRNA_C-tenellus_contig10953.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10953.1.1 vs. uniprot
Match: D7FTI7_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI7_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 9.130e-33
Identity = 65/105 (61.90%), Postives = 67/105 (63.81%), Query Frame = 1
Query:   22 VQVEIFAAGDGINYPQKGQTV---------------------------------IPGLDDGVSQLSIGERAKVTIPPGSAYGARGFPGLVPPSSTLIFDLELITF 237
            V VEIFAAGDGINYPQKGQTV                                 +PGLDDGVSQLSIGERAKVTIP  SAYGARGFPGLVPP S L+FDLELITF
Sbjct:    6 VSVEIFAAGDGINYPQKGQTVTVHYTGYLEDGTQFDSSRNRGKPFKFKLGSEQVVPGLDDGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITF 110          
BLAST of mRNA_C-tenellus_contig10953.1.1 vs. uniprot
Match: A0A836CL56_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL56_9STRA)

HSP 1 Score: 108 bits (270), Expect = 5.350e-29
Identity = 55/106 (51.89%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   19 PVQVEIFAAGDGINYPQKGQTV---------------------------------IPGLDDGVSQLSIGERAKVTIPPGSAYGARGFPGLVPPSSTLIFDLELITF 237
            PV VEI  AGDG+NYP+KGQ V                                 +PGLD+G +QLSIGERAK+T+PP  AYGA+GFPGLVPP+STL+FD+ELITF
Sbjct:    2 PVTVEILVAGDGVNYPRKGQMVTVHYTAYLDDGTQFDSSRERGKPFKFKLGSEQVVPGLDEGAAQLSIGERAKITMPPSMAYGAKGFPGLVPPNSTLVFDMELITF 107          
BLAST of mRNA_C-tenellus_contig10953.1.1 vs. uniprot
Match: F0YHE6_AURAN (Peptidylprolyl isomerase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHE6_AURAN)

HSP 1 Score: 106 bits (264), Expect = 4.920e-28
Identity = 58/105 (55.24%), Postives = 64/105 (60.95%), Query Frame = 1
Query:   22 VQVEIFAAGDGINYPQKGQTV---------------------------------IPGLDDGVSQLSIGERAKVTIPPGSAYGARGFPGLVPPSSTLIFDLELITF 237
            + VEIFAAGDG+NYP+KGQTV                                 IPGLD GVSQLSIGERAK+ IPP  AYG RGFPGL+P +S LIFDLELITF
Sbjct:    7 IAVEIFAAGDGVNYPRKGQTVTVHYSGYLPSGDMFDSSRDRGKPFKFKLGGEQVIPGLDAGVSQLSIGERAKIVIPPDMAYGDRGFPGLIPRNSALIFDLELITF 111          
BLAST of mRNA_C-tenellus_contig10953.1.1 vs. uniprot
Match: A0A6U1QP22_9STRA (Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QP22_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.060e-28
Identity = 59/107 (55.14%), Postives = 65/107 (60.75%), Query Frame = 1
Query:   16 GPVQVEIFAAGDGINYPQKGQTV---------------------------------IPGLDDGVSQLSIGERAKVTIPPGSAYGARGFPGLVPPSSTLIFDLELITF 237
            G V+VEIFAAGDGINYPQ G+TV                                 I GLD+GVSQLSIGERAK+TIP    YG RGFPGLVPP+S L+FDLELITF
Sbjct:    6 GEVKVEIFAAGDGINYPQPGKTVTVHYTGFLPDGTQFDSSRDRGKPFKFKLGAEQVISGLDEGVSQLSIGERAKITIPSQKGYGERGFPGLVPPNSQLVFDLELITF 112          
BLAST of mRNA_C-tenellus_contig10953.1.1 vs. uniprot
Match: A0A7S2C1G0_9STRA (Peptidylprolyl isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1G0_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.750e-27
Identity = 59/105 (56.19%), Postives = 63/105 (60.00%), Query Frame = 1
Query:   22 VQVEIFAAGDGINYPQKGQTV---------------------------------IPGLDDGVSQLSIGERAKVTIPPGSAYGARGFPGLVPPSSTLIFDLELITF 237
            V VEIFAAGDGINYP+KGQTV                                 I GLD GVSQLSIGERAK++IP   AYG RGFPGLVPP S L+FDLELITF
Sbjct:    6 VAVEIFAAGDGINYPRKGQTVTVHYTGYLPDGDTFDSSRDRGKPFKFKLGAEQVILGLDQGVSQLSIGERAKISIPAALAYGERGFPGLVPPDSELVFDLELITF 110          
BLAST of mRNA_C-tenellus_contig10953.1.1 vs. uniprot
Match: A0A8J2T2V8_9STRA (Peptidylprolyl isomerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2V8_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.380e-26
Identity = 55/105 (52.38%), Postives = 64/105 (60.95%), Query Frame = 1
Query:   22 VQVEIFAAGDGINYPQKGQTV---------------------------------IPGLDDGVSQLSIGERAKVTIPPGSAYGARGFPGLVPPSSTLIFDLELITF 237
            + VEIFAAGDG+NYP++GQTV                                 IPGLD GVSQLSIGERAK++IP   AYG RGFPGL+P +S L+FDLELITF
Sbjct:    8 IAVEIFAAGDGVNYPRQGQTVTVHYSGYLPNGEIFDSSRDRGKPFKFKLGGEQVIPGLDAGVSQLSIGERAKISIPSDMAYGERGFPGLIPRNSALVFDLELITF 112          
BLAST of mRNA_C-tenellus_contig10953.1.1 vs. uniprot
Match: K3WSB6_GLOUD (Peptidylprolyl isomerase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSB6_GLOUD)

HSP 1 Score: 100 bits (248), Expect = 1.720e-25
Identity = 54/109 (49.54%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   10 RGGPVQVEIFAAGDGINYPQKGQTV---------------------------------IPGLDDGVSQLSIGERAKVTIPPGSAYGARGFPGLVPPSSTLIFDLELITF 237
            R G +QVE+F AGDGINYP+KGQTV                                 IPGLD+GV +L + ERAK+ IP   AYG +GFPGLVPP+S LIFDLEL+TF
Sbjct:   12 RPGDIQVEVFIAGDGINYPKKGQTVVVHYTGYLQDGRKFDSSRDREKPFKFKLGAEQVIPGLDEGVERLCMKERAKIFIPADKAYGRKGFPGLVPPNSNLIFDLELLTF 120          
BLAST of mRNA_C-tenellus_contig10953.1.1 vs. uniprot
Match: A0A485LR83_9STRA (Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485LR83_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.810e-25
Identity = 51/109 (46.79%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   10 RGGPVQVEIFAAGDGINYPQKGQTV---------------------------------IPGLDDGVSQLSIGERAKVTIPPGSAYGARGFPGLVPPSSTLIFDLELITF 237
            + G VQVE+F AGDG+NYP+KGQTV                                 IPGLD+G+ QL + ERAK+ IP   AYG +GFPGLVPP++ L+FD+ELITF
Sbjct:   17 KAGEVQVEVFVAGDGVNYPKKGQTVVVHYTAYLQDGKKFDSSRDRDKPFKFKLGAEQVIPGLDEGIEQLCMKERAKIYIPADKAYGKKGFPGLVPPNTNLVFDIELITF 125          
BLAST of mRNA_C-tenellus_contig10953.1.1 vs. uniprot
Match: A0A024TRW9_9STRA (Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TRW9_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.810e-25
Identity = 51/109 (46.79%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   10 RGGPVQVEIFAAGDGINYPQKGQTV---------------------------------IPGLDDGVSQLSIGERAKVTIPPGSAYGARGFPGLVPPSSTLIFDLELITF 237
            + G +QVE+F AGDGINYPQKGQTV                                 IPGLD+G+ +L + ERAK+ IP   AYG +GFPGLVPP++ L+FD+ELITF
Sbjct:   17 KAGEIQVEVFVAGDGINYPQKGQTVVVHYTAYLQDGKKFDSSRDRDKPFKFKLGAEQVIPGLDEGIERLCMKERAKIYIPSDKAYGKKGFPGLVPPNTNLVFDIELITF 125          
BLAST of mRNA_C-tenellus_contig10953.1.1 vs. uniprot
Match: A0A2D4BKI0_PYTIN (Peptidylprolyl isomerase n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BKI0_PYTIN)

HSP 1 Score: 97.4 bits (241), Expect = 2.050e-24
Identity = 51/109 (46.79%), Postives = 63/109 (57.80%), Query Frame = 1
Query:   10 RGGPVQVEIFAAGDGINYPQKGQTV---------------------------------IPGLDDGVSQLSIGERAKVTIPPGSAYGARGFPGLVPPSSTLIFDLELITF 237
            R G +QVE+F AGDGINYP+KGQTV                                 IPGLD+ V +L + ERAK+ IP   AYG +GFPGLVPP++ L+FDLEL+TF
Sbjct:   13 RAGEIQVEVFVAGDGINYPKKGQTVVVHYIAYLQDGKKFDSSRDREKPFKFKLGAEQVIPGLDEAVERLCMKERAKIFIPSDKAYGRKGFPGLVPPNTNLVFDLELLTF 121          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10953.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTI7_ECTSI9.130e-3361.90Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A836CL56_9STRA5.350e-2951.89Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
F0YHE6_AURAN4.920e-2855.24Peptidylprolyl isomerase n=1 Tax=Aureococcus anoph... [more]
A0A6U1QP22_9STRA5.060e-2855.14Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japoni... [more]
A0A7S2C1G0_9STRA2.750e-2756.19Peptidylprolyl isomerase n=1 Tax=Florenciella parv... [more]
A0A8J2T2V8_9STRA2.380e-2652.38Peptidylprolyl isomerase n=1 Tax=Pelagomonas calce... [more]
K3WSB6_GLOUD1.720e-2549.54Peptidylprolyl isomerase n=1 Tax=Globisporangium u... [more]
A0A485LR83_9STRA2.810e-2546.79Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID... [more]
A0A024TRW9_9STRA2.810e-2546.79Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID... [more]
A0A2D4BKI0_PYTIN2.050e-2446.79Peptidylprolyl isomerase n=2 Tax=Pythium TaxID=479... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10953contigC-tenellus_contig10953:902..2168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FTI7
PFAMsFKBP_C,MtN3_slv
Model size243
Max annot lvl2759|Eukaryota
KEGG koko:K09568,ko:K15382
KEGG TC9.A.58.1
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.5e-33
EggNOG OGsCOG0545@1|root,KOG0544@2759|Eukaryota
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-21_001540.1
EC5.2.1.8
DescriptionPeptidyl-prolyl cis-trans isomerase
Cds size243
COG categoryO
BRITEko00000,ko01000,ko02000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.3302853-CDS-C-tenellus_contig10953:901..9821680789156.3302853-CDS-C-tenellus_contig10953:901..982Choristocarpus tenellus KU2346CDSC-tenellus_contig10953 902..982 +
1680789156.3421206-CDS-C-tenellus_contig10953:1239..12961680789156.3421206-CDS-C-tenellus_contig10953:1239..1296Choristocarpus tenellus KU2346CDSC-tenellus_contig10953 1240..1296 +
1680789156.3534558-CDS-C-tenellus_contig10953:2063..21681680789156.3534558-CDS-C-tenellus_contig10953:2063..2168Choristocarpus tenellus KU2346CDSC-tenellus_contig10953 2064..2168 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10953.1.1prot_C-tenellus_contig10953.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10953 902..2168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10953.1.1

>prot_C-tenellus_contig10953.1.1 ID=prot_C-tenellus_contig10953.1.1|Name=mRNA_C-tenellus_contig10953.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=81bp
MPQRGGPVQVEIFAAGDGINYPQKGQTVIPGLDDGVSQLSIGERAKVTIP
PGSAYGARGFPGLVPPSSTLIFDLELITFI*
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mRNA from alignment at C-tenellus_contig10953:902..2168+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10953.1.1 ID=mRNA_C-tenellus_contig10953.1.1|Name=mRNA_C-tenellus_contig10953.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1267bp|location=Sequence derived from alignment at C-tenellus_contig10953:902..2168+ (Choristocarpus tenellus KU2346)
ATGCCCCAGCGGGGTGGACCTGTTCAGGTTGAGATATTCGCGGCTGGAGA TGGTATCAACTATCCACAGAAGGGGCAGACAGTGACCGTGCACTATACTG GATACCTCGAGGATGGAACCCAATTCGACTCTTCTCGCAACCGTGGGAAG CCATTCAAGTTTAAGTTGGGGAGCGAGCAGGTGGGAAAATGCCGTATCTG AAGCGCACAAGACGAGCAAGCATTTTCTTGTCGGCTTCGTGGCTTGCCTC GGACTGGTAATATTTTTTGTTCCCTATGCTCATCAGGAATTCGCTCATCT ACCTGGTACATCACCATTATTACGTTGTTGATCTCAAGGTTATTCCAGGT TTGGATGATGGAGTAAGTCAACTTAGCATCGGCGAGCGAGCCAAGGTGAG CAAGTATTGCTCTATTACTCCCTTTAGACCTTCCTCTACAAGACCTTGAT TTCCCCTGCTATTACCTTTGCCTGCAATAATGTTTTTCTGGAACATGAAA ATGGTTGGATGAATGCATCTAGTCCTACTCAGCGATAAAAAAATAGATTT AAAAGTAACGGTGGATAGGTAGCTAAGTTAAATAGTAATGTAGAGAAATT GAGGAACGAAAAACAATCATCCGTAGGGACGTACTGATGATTTCGATACT TTTTTGGGGGTATGAGGTAGTTTCAGACTGTGGAGTATTTATGTTTGCAG CATACTGCACGATATCCAGCTGAAAACACACAGAGAGAAGGTACAACAAA ATCGACGATCTTGAAATAACCTACTGAATGAAAAAGTACCCATCCCATGC TTCACCTGGACCATGGTCGCCTTTAAAATTCTTCCTTCTTCCTTCTGTGG TAATAAATTTTCCAGTCATACTTTCAAGCACATTCCAGAAGTTAAAAAAT AGACCACTCCCACAAAAAATTGTAAGTATGCACAATTGGTTCCAAGTAAA AATTCTTCAACCGATCCATTTTTTGCCTCATTCTGCAGCAACCATTTTAC TCCTACTCTAACACTTCAAATGGTAGATACGAAATGCAGTTAACAGGTGG TGGTGGTAGGAATGACATTGTTTGCCTTCACCAAAATACCCTTAAGTCAT GCGATTTTCAATGTAAAAATAATCATATTGTCACATGTTCTATTGTTGTG GAAATCGCTCAGGTGACTATTCCACCAGGATCTGCCTATGGAGCACGAGG CTTCCCAGGTCTTGTGCCTCCAAGCTCCACATTAATTTTTGACTTGGAGT TGATTACCTTCATTTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10953:902..2168+

>mRNA_C-tenellus_contig10953.1.1 ID=mRNA_C-tenellus_contig10953.1.1|Name=mRNA_C-tenellus_contig10953.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=243bp|location=Sequence derived from alignment at C-tenellus_contig10953:902..2168+ (Choristocarpus tenellus KU2346)
ATGCCCCAGCGGGGTGGACCTGTTCAGGTTGAGATATTCGCGGCTGGAGA
TGGTATCAACTATCCACAGAAGGGGCAGACAGTTATTCCAGGTTTGGATG
ATGGAGTAAGTCAACTTAGCATCGGCGAGCGAGCCAAGGTGACTATTCCA
CCAGGATCTGCCTATGGAGCACGAGGCTTCCCAGGTCTTGTGCCTCCAAG
CTCCACATTAATTTTTGACTTGGAGTTGATTACCTTCATTTGA
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