mRNA_C-tenellus_contig10947.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10947.4.1
Unique NamemRNA_C-tenellus_contig10947.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10947.4.1 vs. uniprot
Match: D8LNQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ9_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.010e-17
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    1 AVELCVEWLWEIREKVLPQEYFVLVCTFVGIQVVGLNEGLLVGAGCSVLSFVVSYASEQR 180
            AVEL VEWLWE+REK+L  EYFVL+ TFV IQVVGLN+GL+ G   S   FV+SYASE++
Sbjct:  357 AVELSVEWLWEVREKLLAYEYFVLLATFVAIQVVGLNQGLVAGVAFSTAIFVISYASERK 416          
BLAST of mRNA_C-tenellus_contig10947.4.1 vs. uniprot
Match: A0A835ZH57_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH57_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.670e-12
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 AVELCVEWLWEIREKVLPQEYFVLVCTFVGIQVVGLNEGLLVGAGCSVLSFVVSYASEQ 177
            A EL +EWL E+R K+L  EY VL+ TF  IQ+ GLN GL++G  C++L FV SYASE 
Sbjct:  455 AWELMIEWLLEVRSKLLWHEYLVLLLTFSAIQLFGLNTGLIIGIACAMLGFVTSYASES 513          
BLAST of mRNA_C-tenellus_contig10947.4.1 vs. uniprot
Match: A0A7S3XM01_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XM01_HETAK)

HSP 1 Score: 63.5 bits (153), Expect = 1.630e-10
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 AVELCVEWLWEIREKVLPQEYFVLVCTFVGIQVVGLNEGLLVGAGCSVLSFVVSYASEQR 180
            A+EL +EWL E+R K+ P EY VL+ TF+ I +  L +G+L+G   +VL F+V YA E +
Sbjct:  183 AIELMLEWLVEVRAKLPPGEYLVLLVTFLAINITSLEQGMLIGVAAAVLRFIVLYAQEHQ 242          
BLAST of mRNA_C-tenellus_contig10947.4.1 vs. uniprot
Match: M4BA94_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BA94_HYAAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.510e-7
Identity = 24/59 (40.68%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 AVELCVEWLWEIREKVLPQEYFVLVCTFVGIQVVGLNEGLLVGAGCSVLSFVVSYASEQ 177
            AV+L +EWL  +  K+LP+EY VL  +F+ I +V L  G+++G G ++L+F++ YA  +
Sbjct:  526 AVDLMMEWLVHVYHKILPREYIVLWLSFIAINMVSLELGMVLGIGFAILNFMIGYAQVR 584          
BLAST of mRNA_C-tenellus_contig10947.4.1 vs. uniprot
Match: A0A662XN69_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XN69_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.030e-7
Identity = 24/59 (40.68%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 AVELCVEWLWEIREKVLPQEYFVLVCTFVGIQVVGLNEGLLVGAGCSVLSFVVSYASEQ 177
            A++L VEWL  +  K+LP+EY VL  +F+ I +V L  G+++G G ++L+F++ YA  +
Sbjct:   19 AIDLMVEWLVHVYHKILPREYVVLWLSFIAINLVSLELGMVLGIGFAILNFLLGYAQVR 77          
BLAST of mRNA_C-tenellus_contig10947.4.1 vs. uniprot
Match: A0A5D6Y9G9_9STRA (Sulfate_transp domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y9G9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.040e-7
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    1 AVELCVEWLWEIREKVLPQEYFVLVCTFVGIQVVGLNEGLLVGAGCSVLSFVVSYASEQ 177
            A++L VEWL  +  K+LP+EY VL  +FV I  V L  G+L+G G ++L+F++ YA  +
Sbjct:  429 AIDLLVEWLVHVYHKILPREYVVLWLSFVAINWVSLELGMLLGIGFAILNFMLGYAEVR 487          
BLAST of mRNA_C-tenellus_contig10947.4.1 vs. uniprot
Match: H3GTT6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTT6_PHYRM)

HSP 1 Score: 55.1 bits (131), Expect = 2.820e-7
Identity = 24/59 (40.68%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 AVELCVEWLWEIREKVLPQEYFVLVCTFVGIQVVGLNEGLLVGAGCSVLSFVVSYASEQ 177
            A++L +EWL  +  KVLP+EY VL  +F+ I +V L  G+++G G ++L+F++ YA  +
Sbjct:  457 AIDLMMEWLVHVYHKVLPREYVVLWLSFIAINMVSLELGMVLGVGFAILNFLLGYAQVR 515          
BLAST of mRNA_C-tenellus_contig10947.4.1 vs. uniprot
Match: A0A3F2RX17_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RX17_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.840e-7
Identity = 23/59 (38.98%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 AVELCVEWLWEIREKVLPQEYFVLVCTFVGIQVVGLNEGLLVGAGCSVLSFVVSYASEQ 177
            A++L VEWL  +  K+LP+EY VL  +F+ I +V L  G+++G G ++++F++ YA  +
Sbjct: 1819 AIDLMVEWLVHVYHKILPREYVVLWLSFIAINLVSLELGMVLGVGFAIINFLLGYAQVR 1877          
BLAST of mRNA_C-tenellus_contig10947.4.1 vs. uniprot
Match: D0MXB6_PHYIT (Sulfate Permease (SulP) Family n=3 Tax=Phytophthora TaxID=4783 RepID=D0MXB6_PHYIT)

HSP 1 Score: 54.7 bits (130), Expect = 3.850e-7
Identity = 22/59 (37.29%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 AVELCVEWLWEIREKVLPQEYFVLVCTFVGIQVVGLNEGLLVGAGCSVLSFVVSYASEQ 177
            A++L +EWL  +  K+LP+EY VL+ +F+ I +V L  G+++G G ++++F+  YA  +
Sbjct:  488 AIDLMMEWLVHVYHKILPREYVVLLLSFIAINMVSLELGMILGIGFAIINFLFGYAQVR 546          
BLAST of mRNA_C-tenellus_contig10947.4.1 vs. uniprot
Match: A0A484E0J7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E0J7_BRELC)

HSP 1 Score: 54.3 bits (129), Expect = 5.270e-7
Identity = 22/59 (37.29%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 AVELCVEWLWEIREKVLPQEYFVLVCTFVGIQVVGLNEGLLVGAGCSVLSFVVSYASEQ 177
            A++L +EWL  + +K+LP+EY VL  +F+ I +V L  G+++G G ++++F++ YA  +
Sbjct:  458 AIDLMLEWLVHVYQKILPREYVVLWLSFIAINMVSLELGMVLGIGFAIINFLLGYAQVR 516          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10947.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNQ9_ECTSI1.010e-1766.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZH57_9STRA2.670e-1255.93Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S3XM01_HETAK1.630e-1046.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
M4BA94_HYAAE1.510e-740.68Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A662XN69_9STRA2.030e-740.68Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
A0A5D6Y9G9_9STRA2.040e-744.07Sulfate_transp domain-containing protein (Fragment... [more]
H3GTT6_PHYRM2.820e-740.68Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A3F2RX17_9STRA2.840e-738.98Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
D0MXB6_PHYIT3.850e-737.29Sulfate Permease (SulP) Family n=3 Tax=Phytophthor... [more]
A0A484E0J7_BRELC5.270e-737.29Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10947contigC-tenellus_contig10947:4355..5176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LNQ9
PFAMsSTAS,Sulfate_transp,cNMP_binding
Model size184
Max annot lvl2759|Eukaryota
KEGG koko:K03321
KEGG TC2.A.53.3
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.66e-18
EggNOG OGsCOG0659@1|root,KOG0236@2759|Eukaryota
Descriptionsecondary active sulfate transmembrane transporter activity
Cds size183
COG categoryU
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.1902525-CDS-C-tenellus_contig10947:4354..44561680789156.1902525-CDS-C-tenellus_contig10947:4354..4456Choristocarpus tenellus KU2346CDSC-tenellus_contig10947 4355..4456 -
1680789156.2017064-CDS-C-tenellus_contig10947:5095..51761680789156.2017064-CDS-C-tenellus_contig10947:5095..5176Choristocarpus tenellus KU2346CDSC-tenellus_contig10947 5096..5176 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10947.4.1prot_C-tenellus_contig10947.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10947 4355..5176 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10947.4.1

>prot_C-tenellus_contig10947.4.1 ID=prot_C-tenellus_contig10947.4.1|Name=mRNA_C-tenellus_contig10947.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=61bp
AVELCVEWLWEIREKVLPQEYFVLVCTFVGIQVVGLNEGLLVGAGCSVLS
FVVSYASEQR*
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mRNA from alignment at C-tenellus_contig10947:4355..5176-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10947.4.1 ID=mRNA_C-tenellus_contig10947.4.1|Name=mRNA_C-tenellus_contig10947.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=822bp|location=Sequence derived from alignment at C-tenellus_contig10947:4355..5176- (Choristocarpus tenellus KU2346)
GCTGTGGAGCTGTGTGTGGAATGGCTGTGGGAGATCCGAGAAAAGGTCTT ACCCCAGGAGTACTTTGTGCTTGTGTGCACGGTAAGCTGGCTGCTGGTAA TGATTGAAAGAGCCTTTGATGCCCTTTCCCCTTATGAATTAATCAGCAGT GGCCATTGTTCATGACTGAAAATTGCAATCTTGTAGATGGCACTGTGCTG CTATGAGTGTTTATTAACAGACTAGATATGGGGGCGGTCTTACATGCCCG TTTCATCTCTTTGTTTTCGTTTCGTTGGTTTTGAGAGACCTCTAGTCGTG ATGAGCAGTTGTTGTGTAACTGTGTTAAGAGCTTTGCCATGTAGTGTTTG TATCTATTGGATTGGCTTGTGGGCTTGACCCTTCCTGCCCGCAGCTACTC TTGTACTCTGTCTAGGGAAGGGTGGCAGTGAACGCAAGACTCTATGAAGG AGAGGAAATCTGCGACTGATTAGTTGGTTATGGCAGGATTGAGGGGGAAA TAATTTTGCACTACAGGCAACTTACACACTAATGGAACAACTCTTATTTT TCCCTCGTTTGAAGATCCGCTGGCTTTAAACAGATCTCTACCTCCGTCTC TCCATATTTGGTATCACTTGCAGATCTCACCCACTCACACTTTCTGGATC TGGTTGGTTGATGTTGAATGTCCCATTCATTGTTTCTCTTTCTCCCTGTG GTGTGCAACCCCTGCTTTAGTTTGTTGGGATCCAGGTGGTGGGTCTCAAT GAAGGCCTCTTGGTGGGAGCTGGATGTTCTGTGCTGAGCTTTGTAGTCAG CTATGCCTCAGAACAAAGGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10947:4355..5176-

>mRNA_C-tenellus_contig10947.4.1 ID=mRNA_C-tenellus_contig10947.4.1|Name=mRNA_C-tenellus_contig10947.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=183bp|location=Sequence derived from alignment at C-tenellus_contig10947:4355..5176- (Choristocarpus tenellus KU2346)
GCTGTGGAGCTGTGTGTGGAATGGCTGTGGGAGATCCGAGAAAAGGTCTT
ACCCCAGGAGTACTTTGTGCTTGTGTGCACGTTTGTTGGGATCCAGGTGG
TGGGTCTCAATGAAGGCCTCTTGGTGGGAGCTGGATGTTCTGTGCTGAGC
TTTGTAGTCAGCTATGCCTCAGAACAAAGGTGA
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