mRNA_C-tenellus_contig10947.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10947.2.1
Unique NamemRNA_C-tenellus_contig10947.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10947.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10947contigC-tenellus_contig10947:2550..2963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size414
Hectar predicted targeting categorymitochondrion
Exons1
Cds size306
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.1345387-UTR-C-tenellus_contig10947:2549..26031680789156.1345387-UTR-C-tenellus_contig10947:2549..2603Choristocarpus tenellus KU2346UTRC-tenellus_contig10947 2550..2603 -
1680789156.1539626-UTR-C-tenellus_contig10947:2909..29631680789156.1539626-UTR-C-tenellus_contig10947:2909..2963Choristocarpus tenellus KU2346UTRC-tenellus_contig10947 2910..2963 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.1442971-CDS-C-tenellus_contig10947:2603..29091680789156.1442971-CDS-C-tenellus_contig10947:2603..2909Choristocarpus tenellus KU2346CDSC-tenellus_contig10947 2604..2909 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10947.2.1prot_C-tenellus_contig10947.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10947 2604..2909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10947.2.1

>prot_C-tenellus_contig10947.2.1 ID=prot_C-tenellus_contig10947.2.1|Name=mRNA_C-tenellus_contig10947.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=102bp
MLNLIKSTVMRSSVRRVSFYPPIDTHLRKNLLVGEEFPLFIVSGVYLKIE
GKVETCLELVFPFPVVYAVNWNPLCPAPFLCMFQALQQNNVINILHCILP
L*
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mRNA from alignment at C-tenellus_contig10947:2550..2963-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10947.2.1 ID=mRNA_C-tenellus_contig10947.2.1|Name=mRNA_C-tenellus_contig10947.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=414bp|location=Sequence derived from alignment at C-tenellus_contig10947:2550..2963- (Choristocarpus tenellus KU2346)
CATCGCCATGCTTATTTTGTTATTTGTTGAACTTCTCGCCTAGTCTGGCC
TGTCATGTTGAATCTGATCAAATCCACCGTGATGAGGTCTTCAGTAAGGA
GAGTCTCTTTCTACCCACCCATAGATACACATCTGAGGAAAAATCTTCTT
GTGGGTGAGGAATTCCCCCTTTTCATCGTTTCTGGTGTATACCTGAAAAT
TGAGGGGAAAGTGGAGACTTGCTTGGAATTAGTTTTCCCCTTCCCAGTTG
TCTATGCCGTGAACTGGAATCCCCTCTGCCCTGCCCCCTTCCTGTGCATG
TTTCAAGCCCTCCAGCAGAATAATGTCATCAACATCTTGCATTGCATCTT
GCCGTTATGATACAGCAACAGTTGTTCTCAGGTAGCATTGTCCTTCAGGT
GTAAATACACTTCG
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Coding sequence (CDS) from alignment at C-tenellus_contig10947:2550..2963-

>mRNA_C-tenellus_contig10947.2.1 ID=mRNA_C-tenellus_contig10947.2.1|Name=mRNA_C-tenellus_contig10947.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=306bp|location=Sequence derived from alignment at C-tenellus_contig10947:2550..2963- (Choristocarpus tenellus KU2346)
ATGTTGAATCTGATCAAATCCACCGTGATGAGGTCTTCAGTAAGGAGAGT
CTCTTTCTACCCACCCATAGATACACATCTGAGGAAAAATCTTCTTGTGG
GTGAGGAATTCCCCCTTTTCATCGTTTCTGGTGTATACCTGAAAATTGAG
GGGAAAGTGGAGACTTGCTTGGAATTAGTTTTCCCCTTCCCAGTTGTCTA
TGCCGTGAACTGGAATCCCCTCTGCCCTGCCCCCTTCCTGTGCATGTTTC
AAGCCCTCCAGCAGAATAATGTCATCAACATCTTGCATTGCATCTTGCCG
TTATGA
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