mRNA_C-tenellus_contig1094.6.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1094.6.1
Unique NamemRNA_C-tenellus_contig1094.6.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1094.6.1 vs. uniprot
Match: D8LH87_ECTSI (Biotin synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH87_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 1.930e-82
Identity = 123/145 (84.83%), Postives = 135/145 (93.10%), Query Frame = 1 
Query:    1 RMMSSYYEEARNIPM-GESRSMNGVSSTVRNDWTLEEIKEVYNMPMLELLYSASTVHRMFFNSREVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMKIDEVVEAAKRAKEAGSTRFCMGAAWRELGGKKKAFNNILDMV 432
            R++SS+Y+EARN+ M GE+RSMNG+ +TVRNDWT EEI+EVY MPMLELLY AS+VHRMFF+  EVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMKIDEV+ AAKRAKEAGSTRFCMGAAWRELG KKKAFNNILDMV
Sbjct:   28 RLLSSHYQEARNVKMMGETRSMNGIDATVRNDWTKEEIREVYEMPMLELLYRASSVHRMFFDPTEVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMKIDEVMAAAKRAKEAGSTRFCMGAAWRELGNKKKAFNNILDMV 172
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BLAST of mRNA_C-tenellus_contig1094.6.1 vs. uniprot
Match: A0A6V1MT26_HETAK (Biotin synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MT26_HETAK)

HSP 1 Score: 239 bits (609), Expect = 2.700e-75
Identity = 110/141 (78.01%), Postives = 126/141 (89.36%), Query Frame = 1 
Query:   10 SSYYEEARNIPMGESRSMNGVSSTVRNDWTLEEIKEVYNMPMLELLYSASTVHRMFFNSREVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMKIDEVVEAAKRAKEAGSTRFCMGAAWRELGGKKKAFNNILDMV 432
            SSYY EARNI MGE R +NGV + +RNDWT EE++++Y++P LELLY+ASTVHRMF+N REVQQCTL+SIKTGGCTEDCGYCSQS +HKT VKPTPQMK+ EVVEAAKRAKEAGSTRFCMGAAWRELG K+ AF +ILDMV
Sbjct:   43 SSYYREARNISMGEQRELNGVKAIIRNDWTREELQKIYDLPFLELLYTASTVHRMFWNPREVQQCTLISIKTGGCTEDCGYCSQSTKHKTHVKPTPQMKVAEVVEAAKRAKEAGSTRFCMGAAWRELGKKENAFKHILDMV 183
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BLAST of mRNA_C-tenellus_contig1094.6.1 vs. uniprot
Match: A0A7S2V700_9STRA (Biotin synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V700_9STRA)

HSP 1 Score: 236 bits (602), Expect = 2.320e-74
Identity = 108/140 (77.14%), Postives = 123/140 (87.86%), Query Frame = 1 
Query:   13 SYYEEARNIPMGESRSMNGVSSTVRNDWTLEEIKEVYNMPMLELLYSASTVHRMFFNSREVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMKIDEVVEAAKRAKEAGSTRFCMGAAWRELGGKKKAFNNILDMV 432
            SYY E RN  MGESR  NGV + VRNDWT EEI+ +Y++P ++L+Y A+TVHRM+FN+REVQQCTL+SIKTGGCTEDCGYCSQS +HKTFVKPTPQMK+ EVVEAAKRAKEAGSTRFCMGAAWRELG KK AF +ILDMV
Sbjct:   36 SYYSEPRNAKMGESREFNGVLAPVRNDWTREEIRSIYDLPFMDLVYRAATVHRMYFNAREVQQCTLISIKTGGCTEDCGYCSQSTKHKTFVKPTPQMKVAEVVEAAKRAKEAGSTRFCMGAAWRELGNKKNAFKHILDMV 175
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BLAST of mRNA_C-tenellus_contig1094.6.1 vs. uniprot
Match: A0A836CE79_9STRA (Biotin synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE79_9STRA)

HSP 1 Score: 230 bits (587), Expect = 3.310e-73
Identity = 107/130 (82.31%), Postives = 118/130 (90.77%), Query Frame = 1 
Query:   43 MGESRSMNGVSSTVRNDWTLEEIKEVYNMPMLELLYSASTVHRMFFNSREVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMKIDEVVEAAKRAKEAGSTRFCMGAAWRELGGKKKAFNNILDMV 432
            MGE+RS+NG +++VRNDWT EEI E+Y MPMLELLY A+TVHRMFFN REVQQCTLLSIKTGGCTEDC YCSQSVRHKTFVKPTPQMK+ EV+EAA RAK AGSTRFCMGAAWRE+G KK AFN+ILDMV
Sbjct:    1 MGETRSLNGFTASVRNDWTKEEIAEIYQMPMLELLYRAATVHRMFFNPREVQQCTLLSIKTGGCTEDCSYCSQSVRHKTFVKPTPQMKVQEVLEAAARAKAAGSTRFCMGAAWREMGNKKNAFNHILDMV 130
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BLAST of mRNA_C-tenellus_contig1094.6.1 vs. uniprot
Match: B8C5V3_THAPS (Biotin synthase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5V3_THAPS)

HSP 1 Score: 208 bits (530), Expect = 1.780e-64
Identity = 96/124 (77.42%), Postives = 110/124 (88.71%), Query Frame = 1 
Query:   61 MNGVSSTVRNDWTLEEIKEVYNMPMLELLYSASTVHRMFFNSREVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMKIDEVVEAAKRAKEAGSTRFCMGAAWRELGGKKKAFNNILDMV 432
            M GV++TVR+DWT +EI EVY++P  EL+Y ASTVHRM+++  EVQQCTLLSIKTGGCTEDC YCSQS RHKTFVKPTP MK+ EV+EAAKRAK+AGSTRFCMGAAWRELG KK AFN+ILDMV
Sbjct:    1 MGGVTATVRHDWTKDEIAEVYSLPFHELMYKASTVHRMYWDPSEVQQCTLLSIKTGGCTEDCSYCSQSTRHKTFVKPTPTMKVQEVLEAAKRAKDAGSTRFCMGAAWRELGNKKNAFNHILDMV 124
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BLAST of mRNA_C-tenellus_contig1094.6.1 vs. uniprot
Match: A0A7S1Y620_9STRA (Biotin synthase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y620_9STRA)

HSP 1 Score: 211 bits (536), Expect = 3.380e-64
Identity = 100/141 (70.92%), Postives = 118/141 (83.69%), Query Frame = 1 
Query:   10 SSYYEEARNIPMGESRSMNGVSSTVRNDWTLEEIKEVYNMPMLELLYSASTVHRMFFNSREVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMKIDEVVEAAKRAKEAGSTRFCMGAAWRELGGKKKAFNNILDMV 432
            +S YEE       E+RSM GV++TVR+DWT +EI ++YN+P  EL+Y ASTVHRM+++  EVQQCTLLSIKTGGCTEDC YCSQS RHKTFVKPTP MK+ EV+EAA RAK+AGSTRFCMGAAWRELG KK AFN+IL+MV
Sbjct:   66 NSLYEEE------EARSMGGVTATVRHDWTRQEIADIYNLPYHELMYRASTVHRMYWDPSEVQQCTLLSIKTGGCTEDCSYCSQSTRHKTFVKPTPTMKVQEVLEAAARAKDAGSTRFCMGAAWRELGNKKNAFNHILEMV 200
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BLAST of mRNA_C-tenellus_contig1094.6.1 vs. uniprot
Match: A0A7S1XU27_9STRA (Biotin synthase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU27_9STRA)

HSP 1 Score: 208 bits (530), Expect = 4.450e-64
Identity = 96/128 (75.00%), Postives = 110/128 (85.94%), Query Frame = 1 
Query:   49 ESRSMNGVSSTVRNDWTLEEIKEVYNMPMLELLYSASTVHRMFFNSREVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMKIDEVVEAAKRAKEAGSTRFCMGAAWRELGGKKKAFNNILDMV 432
            E R   G +  VRN WT EEI E+YN P+L+L++ A+ VHRMFF+ REVQQCTL+SIKTGGCTEDCGYCSQSV+HKTFVKPTPQMK+DEV+ AA+RAKEAGSTRFCMGAAWRELGGKK AF +IL MV
Sbjct:    8 ERRIAGGEAVQVRNSWTREEIAEIYNRPLLDLVFEAARVHRMFFDPREVQQCTLISIKTGGCTEDCGYCSQSVKHKTFVKPTPQMKVDEVLAAARRAKEAGSTRFCMGAAWRELGGKKNAFKHILSMV 135
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BLAST of mRNA_C-tenellus_contig1094.6.1 vs. uniprot
Match: K0SUP7_THAOC (Biotin synthase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SUP7_THAOC)

HSP 1 Score: 210 bits (535), Expect = 6.720e-64
Identity = 98/128 (76.56%), Postives = 112/128 (87.50%), Query Frame = 1 
Query:   49 ESRSMNGVSSTVRNDWTLEEIKEVYNMPMLELLYSASTVHRMFFNSREVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMKIDEVVEAAKRAKEAGSTRFCMGAAWRELGGKKKAFNNILDMV 432
            E+RSM GV++TVR+DWT  EI EVY +P  EL+Y ASTVHRM+++  EVQQCTLLSIKTGGCTEDC YCSQS RHKTFVKPTP MK+ EV+EAAKRAK+AGSTRFCMGAAWRELG KK AFN+IL+MV
Sbjct:   82 EARSMGGVTATVRHDWTKAEIAEVYTLPFHELMYRASTVHRMYWDPSEVQQCTLLSIKTGGCTEDCSYCSQSTRHKTFVKPTPTMKVQEVLEAAKRAKDAGSTRFCMGAAWRELGNKKNAFNHILNMV 209
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BLAST of mRNA_C-tenellus_contig1094.6.1 vs. uniprot
Match: A0A7S2PJ29_9STRA (Biotin synthase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PJ29_9STRA)

HSP 1 Score: 209 bits (533), Expect = 1.180e-63
Identity = 97/128 (75.78%), Postives = 114/128 (89.06%), Query Frame = 1 
Query:   49 ESRSMNGVSSTVRNDWTLEEIKEVYNMPMLELLYSASTVHRMFFNSREVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMKIDEVVEAAKRAKEAGSTRFCMGAAWRELGGKKKAFNNILDMV 432
            +SRSM GV+++VR++WT EEI E+Y++P  EL+Y ASTVHRM+++  EVQQCTLLSIKTGGCTEDC YCSQS RHKTFVKPTP MK+ EV+EAAKRAK+AGSTRFCMGAAWRELG KK AFN+ILDMV
Sbjct:   77 DSRSMAGVTASVRHNWTKEEIAELYSLPFHELMYRASTVHRMYWDPAEVQQCTLLSIKTGGCTEDCSYCSQSTRHKTFVKPTPTMKVQEVLEAAKRAKDAGSTRFCMGAAWRELGNKKNAFNHILDMV 204
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BLAST of mRNA_C-tenellus_contig1094.6.1 vs. uniprot
Match: A0A7S2YSA4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YSA4_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.240e-63
Identity = 93/128 (72.66%), Postives = 111/128 (86.72%), Query Frame = 1 
Query:   49 ESRSMNGVSSTVRNDWTLEEIKEVYNMPMLELLYSASTVHRMFFNSREVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMKIDEVVEAAKRAKEAGSTRFCMGAAWRELGGKKKAFNNILDMV 432
            + R M GV++ VRNDWT  EI E+Y +P +EL++ AS VHRM+++  EVQQCTLLSIKTGGCTEDCGYCSQSVR+KTFVKPTP MK+ EV++AA+RAKEAGSTRFCMGAAWRELG KK AFN+IL+MV
Sbjct:   73 DERIMGGVTARVRNDWTKAEIAEIYQLPFVELMHRASMVHRMYWDPSEVQQCTLLSIKTGGCTEDCGYCSQSVRYKTFVKPTPTMKVQEVLQAAQRAKEAGSTRFCMGAAWRELGNKKNAFNHILEMV 200
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1094.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH87_ECTSI1.930e-8284.83Biotin synthase n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
A0A6V1MT26_HETAK2.700e-7578.01Biotin synthase n=1 Tax=Heterosigma akashiwo TaxID... [more]
A0A7S2V700_9STRA2.320e-7477.14Biotin synthase n=1 Tax=Fibrocapsa japonica TaxID=... [more]
A0A836CE79_9STRA3.310e-7382.31Biotin synthase n=1 Tax=Tribonema minus TaxID=3033... [more]
B8C5V3_THAPS1.780e-6477.42Biotin synthase (Fragment) n=1 Tax=Thalassiosira p... [more]
A0A7S1Y620_9STRA3.380e-6470.92Biotin synthase n=1 Tax=Grammatophora oceanica Tax... [more]
A0A7S1XU27_9STRA4.450e-6475.00Biotin synthase (Fragment) n=1 Tax=Phaeomonas parv... [more]
K0SUP7_THAOC6.720e-6476.56Biotin synthase n=1 Tax=Thalassiosira oceanica Tax... [more]
A0A7S2PJ29_9STRA1.180e-6375.78Biotin synthase n=1 Tax=Skeletonema marinoi TaxID=... [more]
A0A7S2YSA4_9STRA1.240e-6372.66Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1094contigC-tenellus_contig1094:13917..14732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LH87
Preferred nameBIO2
PFAMsBATS,Radical_SAM
Model size435
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00041,RC00441
KEGG koko:K01012,ko:K15400
KEGG ReactionR01078,R09106
KEGG Pathwayko00073,ko00780,ko01100,map00073,map00780,map01100
KEGG ModuleM00123,M00573,M00577
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004076,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016740,GO:0016782,GO:0016783,GO:0017144,GO:0018130,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0070283,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons3
Evalue1.22e-82
EggNOG OGsCOG0502@1|root,KOG2900@2759|Eukaryota
EC2.3.1.188,2.8.1.6
Descriptionbiotin synthase activity
Cds size432
COG categoryH
BiGG ReactioniMM904.YGR286C,iND750.YGR286C
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.9607015-UTR-C-tenellus_contig1094:13916..139191680789155.9607015-UTR-C-tenellus_contig1094:13916..13919Choristocarpus tenellus KU2346UTRC-tenellus_contig1094 13917..13919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.9747043-CDS-C-tenellus_contig1094:13919..140061680789155.9747043-CDS-C-tenellus_contig1094:13919..14006Choristocarpus tenellus KU2346CDSC-tenellus_contig1094 13920..14006 +
1680789155.9835906-CDS-C-tenellus_contig1094:14261..144771680789155.9835906-CDS-C-tenellus_contig1094:14261..14477Choristocarpus tenellus KU2346CDSC-tenellus_contig1094 14262..14477 +
1680789155.9939349-CDS-C-tenellus_contig1094:14603..147321680789155.9939349-CDS-C-tenellus_contig1094:14603..14732Choristocarpus tenellus KU2346CDSC-tenellus_contig1094 14604..14732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1094.6.1prot_C-tenellus_contig1094.6.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1094 13920..14732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1094.6.1

>prot_C-tenellus_contig1094.6.1 ID=prot_C-tenellus_contig1094.6.1|Name=mRNA_C-tenellus_contig1094.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=144bp
MMSSYYEEARNIPMGESRSMNGVSSTVRNDWTLEEIKEVYNMPMLELLYS
ASTVHRMFFNSREVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQM
KIDEVVEAAKRAKEAGSTRFCMGAAWRELGGKKKAFNNILDMV*
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mRNA from alignment at C-tenellus_contig1094:13917..14732+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1094.6.1 ID=mRNA_C-tenellus_contig1094.6.1|Name=mRNA_C-tenellus_contig1094.6.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=816bp|location=Sequence derived from alignment at C-tenellus_contig1094:13917..14732+ (Choristocarpus tenellus KU2346)
AGGATGATGTCGTCGTACTACGAGGAGGCTCGCAATATCCCAATGGGGGA
GTCTCGAAGCATGAATGGTGTGAGTTCCACTGTGCGCAATGTGAGTGGTG
CCATTTGCGGTTTCAAGTGGCGAGGACAATATATCCGATCCACAAAGTTG
GAGATGCTTGTTGACGTGGTCTAAATTTGGTTTGCCCCGCTTCAGTCTTC
AATTAACAACATCACATAGGATCAACTACACTTTTCTACTCGAGGCACCA
GAAATAGAGTCTGGGTAGCGCTTCTCCCAGAATGTGTCCCACCGTGTGTT
CACGTTCCCTTACGAGGTCTACTTCAATACATGCACATGAAACAGGACTG
GACATTGGAGGAGATCAAGGAGGTTTACAACATGCCAATGCTGGAGCTTC
TATACTCTGCATCCACTGTTCACCGCATGTTCTTCAATTCCAGAGAAGTG
CAGCAATGCACTCTCCTATCGATCAAGACTGGTGGTTGTACAGAGGATTG
CGGCTACTGCTCTCAGTCAGTGCGCCACAAGACCTTCGTCAAGCCTACAC
CTCAGATGAAGGTTTCTCCTATTAGACTTATTCTTTTGTAATAGTTTCCC
TGCTTTGAGGTCTGTACTTCCTTCTTGGTCCATGAAATCTTTGCCTGATC
TCGTCGCATGTCCTGCAACTTGGTGGGGCAAATACAGATCGATGAGGTGG
TCGAGGCCGCCAAGAGGGCCAAGGAAGCTGGAAGTACCCGTTTCTGCATG
GGAGCAGCCTGGCGTGAGCTTGGTGGCAAGAAAAAAGCGTTTAACAACAT
CCTCGATATGGTGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig1094:13917..14732+

>mRNA_C-tenellus_contig1094.6.1 ID=mRNA_C-tenellus_contig1094.6.1|Name=mRNA_C-tenellus_contig1094.6.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=432bp|location=Sequence derived from alignment at C-tenellus_contig1094:13917..14732+ (Choristocarpus tenellus KU2346)
ATGATGTCGTCGTACTACGAGGAGGCTCGCAATATCCCAATGGGGGAGTC
TCGAAGCATGAATGGTGTGAGTTCCACTGTGCGCAATGACTGGACATTGG
AGGAGATCAAGGAGGTTTACAACATGCCAATGCTGGAGCTTCTATACTCT
GCATCCACTGTTCACCGCATGTTCTTCAATTCCAGAGAAGTGCAGCAATG
CACTCTCCTATCGATCAAGACTGGTGGTTGTACAGAGGATTGCGGCTACT
GCTCTCAGTCAGTGCGCCACAAGACCTTCGTCAAGCCTACACCTCAGATG
AAGATCGATGAGGTGGTCGAGGCCGCCAAGAGGGCCAAGGAAGCTGGAAG
TACCCGTTTCTGCATGGGAGCAGCCTGGCGTGAGCTTGGTGGCAAGAAAA
AAGCGTTTAACAACATCCTCGATATGGTGTGA
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