mRNA_C-tenellus_contig10936.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10936.1.2
Unique NamemRNA_C-tenellus_contig10936.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10936.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10936contigC-tenellus_contig10936:477..2137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1083
Hectar predicted targeting categoryother localisation
Exons3
Cds size675
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.5246606-UTR-C-tenellus_contig10936:476..6341680789155.5246606-UTR-C-tenellus_contig10936:476..634Choristocarpus tenellus KU2346UTRC-tenellus_contig10936 477..634 +
1680789155.5749955-UTR-C-tenellus_contig10936:1887..21371680789155.5749955-UTR-C-tenellus_contig10936:1887..2137Choristocarpus tenellus KU2346UTRC-tenellus_contig10936 1888..2137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.538196-CDS-C-tenellus_contig10936:634..10521680789155.538196-CDS-C-tenellus_contig10936:634..1052Choristocarpus tenellus KU2346CDSC-tenellus_contig10936 635..1052 +
1680789155.552481-CDS-C-tenellus_contig10936:1243..12821680789155.552481-CDS-C-tenellus_contig10936:1243..1282Choristocarpus tenellus KU2346CDSC-tenellus_contig10936 1244..1282 +
1680789155.564121-CDS-C-tenellus_contig10936:1669..18871680789155.564121-CDS-C-tenellus_contig10936:1669..1887Choristocarpus tenellus KU2346CDSC-tenellus_contig10936 1670..1887 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10936.1.2prot_C-tenellus_contig10936.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10936 635..1887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10936.1.2

>prot_C-tenellus_contig10936.1.2 ID=prot_C-tenellus_contig10936.1.2|Name=mRNA_C-tenellus_contig10936.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=225bp
MLFSFDMPGVRRKHWLHRDKLKDRPPTEDFHSILEPMLHIEPLASASQSH
PCELACSTQHFAVCGDWMVSRTDSLREENWISSTPCCSSSKEVTGEENDW
KDKESNCWLSDEENDEGFSFVMSSAWAERFRNSKPVQRCLRRLGGKNRKH
PGERDGKSGGNGKKKGRGAQSHTEDTDLICIVKPKPLHQCSEGEQGERIF
RQLEQDAVRYACQHRHSTREGFRK*
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mRNA from alignment at C-tenellus_contig10936:477..2137+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10936.1.2 ID=mRNA_C-tenellus_contig10936.1.2|Name=mRNA_C-tenellus_contig10936.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1661bp|location=Sequence derived from alignment at C-tenellus_contig10936:477..2137+ (Choristocarpus tenellus KU2346)
AACAGGAATGCACGGTTTTGACCTACGGTGTGATCATGGTTTCAGAAACC
CACCTTTAATGATCCCACCTCATTTTTCTGAAGGTTAGATCAATAGAAGT
GTCGAAATCTACCCTGAGGAATCGCACATCTTTGTGTTCGTAACTTCATT
TCTTTTGGATGTTGTTTTCCTTTGACATGCCAGGCGTCCGAAGAAAACAT
TGGTTACACAGAGACAAGCTTAAGGATCGTCCTCCAACAGAGGATTTTCA
TAGCATTCTTGAACCCATGTTACATATAGAGCCATTGGCAAGTGCGAGCC
AGTCGCACCCTTGTGAATTGGCATGTTCAACGCAGCACTTCGCTGTGTGT
GGGGATTGGATGGTCTCTAGAACTGATTCTCTAAGGGAAGAAAATTGGAT
CAGTTCAACTCCATGCTGTAGCTCTAGTAAGGAGGTCACTGGTGAGGAGA
ATGACTGGAAGGATAAGGAAAGCAACTGTTGGCTGAGCGACGAGGAGAAC
GACGAGGGATTTAGCTTCGTCATGTCATCGGCCTGGGCAGAGCGTTTTCG
CAACTCGAAACCTGTACAGCGATGTTGTAAGTGGAAGTGTGGTGGCTACT
CCTAGAGAGCTCTAATTGTCGAGACTTGCTCAGCTTTGTGTTGGCATGTT
CCATAATGCTAACGATGGTGGTTGTGTATCAACAACATGCAGTCTCTCAT
TGACTTACCGTCAACTTTCTCCCTCACCCATTTGCTACACGACTCTATGG
ATGCACTGTAAACTCAGTGCGACGGCTTGGAGGCAAGAACCGAAAGCATC
CTGGAGGTGATAACTGATTTTACACGCTTTGCGTTGAGCATGGAGGGAAT
TGGTATCTACGTAACTTAGAAGAAACCACTGGGCCCTATCATGAAGGGGT
GCTGTTTTTGGCAAGCAACATGAGTGCACTCGCACACTATTGGGCTGTTG
GTTTAAACTGCTACCTAGTTCTGCTGGATCTTGGGAGATGTTACTCAATA
GTGTTGTCTTGCTAAGGAAGGCTTCATTGTGGTGGATTGCCATAGATCAA
AGCGCTTCAAGATATGCCACCATACAGTATATTACCACTCCTCCTTTCTA
TGAATTTCCAACACAGTAATCTCTATCTGTCCTTCTGCCCCACGCTTCTT
TAAATCTTCCCTATCCTGCCTGACAACCCTATGCCTTGTCTAGAACGAGA
TGGAAAGAGTGGAGGCAATGGCAAGAAAAAGGGCCGAGGGGCCCAGAGTC
ACACAGAGGACACTGATTTGATATGCATCGTGAAACCCAAGCCCCTGCAT
CAGTGCAGTGAAGGGGAGCAGGGAGAGAGAATATTTCGTCAGCTGGAGCA
GGATGCAGTACGGTATGCATGCCAGCACCGACATAGCACACGGGAAGGTT
TTAGGAAATGACATACAAAATATTCTTCTTGATACTGGTACTTACCGTAT
CAGGTTATATGTGCACTGCACTGATGTGTTCGAATGTGTTATTTCAGACA
GTGCAAATGCAACGAAATTTCCATTTTGATCTGGCTGCATACTAGTGCAA
GGACTTAATTTAATCATGGTTCCAAGTTATATACTGTACACATTTCACTG
CTGGATTACAGACTACCTCCTCTTCAAGTTTAGTACTAACTCTGAAGAAC
CTTTTCCTGCC
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Coding sequence (CDS) from alignment at C-tenellus_contig10936:477..2137+

>mRNA_C-tenellus_contig10936.1.2 ID=mRNA_C-tenellus_contig10936.1.2|Name=mRNA_C-tenellus_contig10936.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=675bp|location=Sequence derived from alignment at C-tenellus_contig10936:477..2137+ (Choristocarpus tenellus KU2346)
ATGTTGTTTTCCTTTGACATGCCAGGCGTCCGAAGAAAACATTGGTTACA
CAGAGACAAGCTTAAGGATCGTCCTCCAACAGAGGATTTTCATAGCATTC
TTGAACCCATGTTACATATAGAGCCATTGGCAAGTGCGAGCCAGTCGCAC
CCTTGTGAATTGGCATGTTCAACGCAGCACTTCGCTGTGTGTGGGGATTG
GATGGTCTCTAGAACTGATTCTCTAAGGGAAGAAAATTGGATCAGTTCAA
CTCCATGCTGTAGCTCTAGTAAGGAGGTCACTGGTGAGGAGAATGACTGG
AAGGATAAGGAAAGCAACTGTTGGCTGAGCGACGAGGAGAACGACGAGGG
ATTTAGCTTCGTCATGTCATCGGCCTGGGCAGAGCGTTTTCGCAACTCGA
AACCTGTACAGCGATGTTTGCGACGGCTTGGAGGCAAGAACCGAAAGCAT
CCTGGAGAACGAGATGGAAAGAGTGGAGGCAATGGCAAGAAAAAGGGCCG
AGGGGCCCAGAGTCACACAGAGGACACTGATTTGATATGCATCGTGAAAC
CCAAGCCCCTGCATCAGTGCAGTGAAGGGGAGCAGGGAGAGAGAATATTT
CGTCAGCTGGAGCAGGATGCAGTACGGTATGCATGCCAGCACCGACATAG
CACACGGGAAGGTTTTAGGAAATGA
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