mRNA_C-tenellus_contig10931.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10931.1.1
Unique NamemRNA_C-tenellus_contig10931.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10931.1.1 vs. uniprot
Match: D8LQA2_ECTSI (Cationic amino acid transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQA2_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 2.200e-55
Identity = 97/137 (70.80%), Postives = 112/137 (81.75%), Query Frame = 1
Query:   16 YNTLSDNRMAASRRFDGIIGSRALLRKPMPVVLEEVTQDKLERHLTLFDLVVIGVAGTIGSGMFALVGLIASSYAGPAGVISWTLAGLGCMLSGLSYAELSSMIPSEGGAYAYAYVALGELPAMLTGWLLTLEVGNS 426
            YNTLS N    SRR  G+ G  AL+RKP+ VVL E + D L RHLTLFDLVVIGVAGT+GSG+FA+VGLI S+YAGPA V+SW LAG+GC+ SGLSYAELSS+IPSEGG YAYA+VALGELPA++T W LTLE G S
Sbjct:    6 YNTLSQNTRTPSRRLPGLPGVPALIRKPLAVVLMEASNDPLVRHLTLFDLVVIGVAGTVGSGIFAIVGLIGSTYAGPAAVVSWVLAGIGCVFSGLSYAELSSIIPSEGGTYAYAFVALGELPAIVTAWCLTLEFGIS 142          
BLAST of mRNA_C-tenellus_contig10931.1.1 vs. uniprot
Match: A0A7R9UE61_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE61_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.460e-39
Identity = 73/116 (62.93%), Postives = 88/116 (75.86%), Query Frame = 1
Query:   79 RALLRKPMPVVLEEVTQDKLERHLTLFDLVVIGVAGTIGSGMFALVGLIASSYAGPAGVISWTLAGLGCMLSGLSYAELSSMIPSEGGAYAYAYVALGELPAMLTGWLLTLEVGNS 426
            R  LRKP+ VV  E    KL RHL+LFDL+ IG+ GT+GSG+F L GLIA  YAGPA V+SW  AG GC+LSG++YAE+SS +PS G +YAY YVALGELPA++ GW LTLE G S
Sbjct:   29 RVFLRKPLAVVEAEERGSKLGRHLSLFDLLCIGIGGTVGSGVFVLCGLIAHEYAGPAVVLSWLTAGFGCVLSGMNYAEMSSRVPSAGSSYAYTYVALGELPAVVAGWCLTLEYGIS 144          
BLAST of mRNA_C-tenellus_contig10931.1.1 vs. uniprot
Match: D0NIV1_PHYIT (Amino Acid-Polyamine-Organocation (APC) Family n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NIV1_PHYIT)

HSP 1 Score: 137 bits (346), Expect = 5.210e-36
Identity = 72/121 (59.50%), Postives = 89/121 (73.55%), Query Frame = 1
Query:   82 ALLRKPMPV------VLEEVTQDKLERHLTLFDLVVIGVAGTIGSGMFALVGLIASSYAGPAGVISWTLAGLGCMLSGLSYAELSSMIPSEGGAYAYAYVALGELPAMLTGWLLTLEVGNS 426
            A  RKP+ V      V E     ++ER L LFDL++IG+ GT+GSG+FA  GLIASSYAGPA  +SW LAG+GC+LSGLS+ EL+ +IPS G  YAYAY ALGELPA++ G+LLTLE G S
Sbjct:    7 AFWRKPLHVETSSHSVQESDNAPEMERTLGLFDLIMIGIGGTVGSGVFATAGLIASSYAGPAATLSWLLAGIGCLLSGLSFMELACLIPSAGSTYAYAYHALGELPALIAGFLLTLEYGVS 127          
BLAST of mRNA_C-tenellus_contig10931.1.1 vs. uniprot
Match: A0A8J5IHE5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IHE5_9STRA)

HSP 1 Score: 135 bits (340), Expect = 3.140e-35
Identity = 70/121 (57.85%), Postives = 89/121 (73.55%), Query Frame = 1
Query:   82 ALLRKPMPV------VLEEVTQDKLERHLTLFDLVVIGVAGTIGSGMFALVGLIASSYAGPAGVISWTLAGLGCMLSGLSYAELSSMIPSEGGAYAYAYVALGELPAMLTGWLLTLEVGNS 426
            A  RKP+ +      V +     ++ER L LFDL++IG+ GT+GSG+FA  GLIASSYAGPA  +SW LAG+GC+LSGLS+ EL+ +IPS G  YAYAY ALGELPA++ G+LLTLE G S
Sbjct:    7 AFWRKPLRLETSSHSVQQSEDAPEMERTLGLFDLIMIGIGGTVGSGVFATAGLIASSYAGPAATLSWLLAGIGCLLSGLSFMELACLIPSAGSTYAYAYHALGELPALIAGFLLTLEYGVS 127          
BLAST of mRNA_C-tenellus_contig10931.1.1 vs. uniprot
Match: A0A833TAT7_PHYIN (AA permease C-terminal domain-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TAT7_PHYIN)

HSP 1 Score: 137 bits (346), Expect = 3.860e-35
Identity = 72/121 (59.50%), Postives = 89/121 (73.55%), Query Frame = 1
Query:   82 ALLRKPMPV------VLEEVTQDKLERHLTLFDLVVIGVAGTIGSGMFALVGLIASSYAGPAGVISWTLAGLGCMLSGLSYAELSSMIPSEGGAYAYAYVALGELPAMLTGWLLTLEVGNS 426
            A  RKP+ V      V E     ++ER L LFDL++IG+ GT+GSG+FA  GLIASSYAGPA  +SW LAG+GC+LSGLS+ EL+ +IPS G  YAYAY ALGELPA++ G+LLTLE G S
Sbjct:    7 AFWRKPLHVETSSHSVQESDNAPEMERTLGLFDLIMIGIGGTVGSGVFATAGLIASSYAGPAATLSWLLAGIGCLLSGLSFMELACLIPSAGSTYAYAYHALGELPALIAGFLLTLEYGVS 127          
BLAST of mRNA_C-tenellus_contig10931.1.1 vs. uniprot
Match: A0A835ZA89_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA89_9STRA)

HSP 1 Score: 137 bits (345), Expect = 7.400e-35
Identity = 67/111 (60.36%), Postives = 86/111 (77.48%), Query Frame = 1
Query:   94 KPMPVVLEEVTQDKLERHLTLFDLVVIGVAGTIGSGMFALVGLIASSYAGPAGVISWTLAGLGCMLSGLSYAELSSMIPSEGGAYAYAYVALGELPAMLTGWLLTLEVGNS 426
            KP+ V+  E +  +LER L L+DLV IG+ GTIGSG+F + GLI    AGPAGV SW +AGLGC+LSG+++AE+SS++PS G AYAYAYVALGELPA++  W L+LE G S
Sbjct:   41 KPLRVIHAEESCQELERTLGLWDLVAIGIGGTIGSGVFVMCGLIGGEVAGPAGVFSWLVAGLGCLLSGVAFAEMSSLVPSAGSAYAYAYVALGELPAVVIAWCLSLEYGIS 151          
BLAST of mRNA_C-tenellus_contig10931.1.1 vs. uniprot
Match: V9F4V2_PHYPR (AA_permease_C domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9F4V2_PHYPR)

HSP 1 Score: 136 bits (343), Expect = 1.070e-34
Identity = 71/121 (58.68%), Postives = 89/121 (73.55%), Query Frame = 1
Query:   82 ALLRKPMPV------VLEEVTQDKLERHLTLFDLVVIGVAGTIGSGMFALVGLIASSYAGPAGVISWTLAGLGCMLSGLSYAELSSMIPSEGGAYAYAYVALGELPAMLTGWLLTLEVGNS 426
            A  RKP+ +      V E     ++ER L LFDL++IG+ GT+GSG+FA  GLIASSYAGPA  +SW LAG+GC+LSGLS+ EL+ +IPS G  YAYAY ALGELPA++ G+LLTLE G S
Sbjct:    7 AFWRKPLHLETSSHSVQESENAPEMERTLGLFDLIMIGIGGTVGSGVFATAGLIASSYAGPAATLSWLLAGIGCLLSGLSFMELACLIPSAGSTYAYAYHALGELPALVAGFLLTLEYGVS 127          
BLAST of mRNA_C-tenellus_contig10931.1.1 vs. uniprot
Match: W2ZBC9_PHYPR (AA_permease_C domain-containing protein n=1 Tax=Phytophthora parasitica P10297 TaxID=1317064 RepID=W2ZBC9_PHYPR)

HSP 1 Score: 136 bits (343), Expect = 1.070e-34
Identity = 71/121 (58.68%), Postives = 89/121 (73.55%), Query Frame = 1
Query:   82 ALLRKPMPV------VLEEVTQDKLERHLTLFDLVVIGVAGTIGSGMFALVGLIASSYAGPAGVISWTLAGLGCMLSGLSYAELSSMIPSEGGAYAYAYVALGELPAMLTGWLLTLEVGNS 426
            A  RKP+ +      V E     ++ER L LFDL++IG+ GT+GSG+FA  GLIASSYAGPA  +SW LAG+GC+LSGLS+ EL+ +IPS G  YAYAY ALGELPA++ G+LLTLE G S
Sbjct:    7 AFWRKPLHLETSSHSVQESENAPEMERTLGLFDLIMIGIGGTVGSGVFATAGLIASSYAGPAATLSWLLAGIGCLLSGLSFMELACLIPSAGSTYAYAYHALGELPALVAGFLLTLEYGVS 127          
BLAST of mRNA_C-tenellus_contig10931.1.1 vs. uniprot
Match: A0A225WEL0_9STRA (Amino Acid-Polyamine-Organocation (APC) protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WEL0_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.270e-34
Identity = 71/119 (59.66%), Postives = 91/119 (76.47%), Query Frame = 1
Query:   82 ALLRKPMPVVLEE--VTQDK--LERHLTLFDLVVIGVAGTIGSGMFALVGLIASSYAGPAGVISWTLAGLGCMLSGLSYAELSSMIPSEGGAYAYAYVALGELPAMLTGWLLTLEVGNS 426
            A  RKP+ + +    V +D+  +ER L LFDL++IG+ GT+GSG+FA  GLIASSYAGPA  +SW LAG+GC+LSGLS+ EL+ +IPS G  YAYAY ALGELPA++ G+LLTLE G S
Sbjct:    7 AFWRKPLHLEMSSHSVQEDEPEMERTLGLFDLLMIGIGGTVGSGVFATAGLIASSYAGPAATLSWLLAGVGCLLSGLSFMELACLIPSAGSTYAYAYHALGELPALIAGFLLTLEYGVS 125          
BLAST of mRNA_C-tenellus_contig10931.1.1 vs. uniprot
Match: A0A484DZC6_BRELC (AA_permease_C domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZC6_BRELC)

HSP 1 Score: 135 bits (341), Expect = 1.890e-34
Identity = 73/121 (60.33%), Postives = 89/121 (73.55%), Query Frame = 1
Query:   82 ALLRKPMPV------VLEEVTQDKLERHLTLFDLVVIGVAGTIGSGMFALVGLIASSYAGPAGVISWTLAGLGCMLSGLSYAELSSMIPSEGGAYAYAYVALGELPAMLTGWLLTLEVGNS 426
            A  RKP+ +      V E     +LER L LFDL++IG+ GT+GSG+FA  GLIASSYAGPA  +SW LAG GC+LSGLS+ ELS +IPS G +YAYAY ALGELPA++ G+LLTLE G S
Sbjct:    7 AFWRKPLHLETLSHSVQEPKDAPELERTLGLFDLLMIGIGGTVGSGVFATSGLIASSYAGPAATLSWLLAGAGCLLSGLSFMELSCLIPSAGSSYAYAYHALGELPALIAGFLLTLEYGVS 127          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10931.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQA2_ECTSI2.200e-5570.80Cationic amino acid transporter-like protein n=2 T... [more]
A0A7R9UE61_9STRA2.460e-3962.93Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
D0NIV1_PHYIT5.210e-3659.50Amino Acid-Polyamine-Organocation (APC) Family n=1... [more]
A0A8J5IHE5_9STRA3.140e-3557.85Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A833TAT7_PHYIN3.860e-3559.50AA permease C-terminal domain-containing protein n... [more]
A0A835ZA89_9STRA7.400e-3560.36Amino acid permease-domain-containing protein n=1 ... [more]
V9F4V2_PHYPR1.070e-3458.68AA_permease_C domain-containing protein n=9 Tax=Ph... [more]
W2ZBC9_PHYPR1.070e-3458.68AA_permease_C domain-containing protein n=1 Tax=Ph... [more]
A0A225WEL0_9STRA1.270e-3459.66Amino Acid-Polyamine-Organocation (APC) protein n=... [more]
A0A484DZC6_BRELC1.890e-3460.33AA_permease_C domain-containing protein n=1 Tax=Br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10931contigC-tenellus_contig10931:3800..5180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LQA2
PFAMsAA_permease_2,AA_permease_C
Model size426
Max annot lvl2759|Eukaryota
KEGG koko:K03294
KEGG TC2.A.3.2
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0016020,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
Exons4
Evalue3.61e-56
EggNOG OGsCOG0531@1|root,KOG1286@2759|Eukaryota
Descriptionamino acid transport
Cds size426
COG categoryE
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.4436066-CDS-C-tenellus_contig10931:3799..38941680789155.4436066-CDS-C-tenellus_contig10931:3799..3894Choristocarpus tenellus KU2346CDSC-tenellus_contig10931 3800..3894 +
1680789155.4623373-CDS-C-tenellus_contig10931:4022..41081680789155.4623373-CDS-C-tenellus_contig10931:4022..4108Choristocarpus tenellus KU2346CDSC-tenellus_contig10931 4023..4108 +
1680789155.4829624-CDS-C-tenellus_contig10931:4452..44931680789155.4829624-CDS-C-tenellus_contig10931:4452..4493Choristocarpus tenellus KU2346CDSC-tenellus_contig10931 4453..4493 +
1680789155.4920046-CDS-C-tenellus_contig10931:4976..51801680789155.4920046-CDS-C-tenellus_contig10931:4976..5180Choristocarpus tenellus KU2346CDSC-tenellus_contig10931 4977..5180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10931.1.1prot_C-tenellus_contig10931.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10931 3800..5180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10931.1.1

>prot_C-tenellus_contig10931.1.1 ID=prot_C-tenellus_contig10931.1.1|Name=mRNA_C-tenellus_contig10931.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=142bp
MGKFYYNTLSDNRMAASRRFDGIIGSRALLRKPMPVVLEEVTQDKLERHL
TLFDLVVIGVAGTIGSGMFALVGLIASSYAGPAGVISWTLAGLGCMLSGL
SYAELSSMIPSEGGAYAYAYVALGELPAMLTGWLLTLEVGNS
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mRNA from alignment at C-tenellus_contig10931:3800..5180+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10931.1.1 ID=mRNA_C-tenellus_contig10931.1.1|Name=mRNA_C-tenellus_contig10931.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1381bp|location=Sequence derived from alignment at C-tenellus_contig10931:3800..5180+ (Choristocarpus tenellus KU2346)
ATGGGAAAGTTCTACTACAATACGCTCTCAGATAACAGGATGGCAGCCTC CAGGCGATTTGATGGGATCATTGGATCAAGGGCCCTTCTCCGCAAGTAAG CAGCCAAACATCAAACCGTCTGAGTAACCACATGTCCCTCGCTTAGATGA CATGACCAATGGTGGTACATCACCACAGCCGAAGTGAGTACAATTTATCT TCTACTCTGTACAATCCTCTCAGGCCAATGCCAGTGGTCCTTGAAGAGGT CACGCAGGACAAACTGGAGAGGCACCTCACTCTCTTCGACCTGGTGGTGA TTGGTGTAGGTGAGAGTGTTCGCCCTTTCCCTTACCCTTCCAAGATATAC CATTTTGATTGCAAATGCGTTGCCCACTATAATTTTCCATGTCTCAGTGT AAAACTGGGATTGCTGTTGCGACACTCCTCATCTCAGGCTACTTCTCTCG CACTGCCACTAACAACGGCAATTTCGATAGAGGGTTGGGTCACCTGTCGC TATGTGACCGTAAAGTGTACTTGTCACACTACATTCTTGACAAAAGATTG ACACGGGAAAAATTGAACATCGTCACCGTAGCACCGTCACCACGTCTAAC ATTTGTACTCCTGCCAACTTCCTTGTACCTCTCATTTGCACACCTTCAAC CAGCTGGTACAATCGGGAGTGGAATGTTCGCTCTCGTCGGCCTGGTGAGT TTCCCTTTCCGTTTTGTTTGCCCCTATTCCTCTAATCTCATGCAGACCAG TTCCGAATATCGTCCACTTTGAAGTGTGTAACATGCTACTTCATGTGGAT TTGTGTACAACATTTTTAGGTAGTTGATGTAGGGGACCCCAGCATTCTGG GGAAGGTGATGATTTTCACTAATGGACAATTAGGAGCGGGAAATATGGTT GTGATCTTGAGAGCACCACCTTTGATTATGATAGTTCTGTTTTGTCGATG ATTTTTGTCATGGAGTTGAGTATCAAACTAGCCCAGGAATGAATTAGGAA GCGTGTATTTTGGTATCCTTTCTACAACCCCTCTCTTCGTCATGCCAGGT TCTCTCTCTCTCTCCCAGGTTGCTGTTGTTCACTTAGTTACTGCTTGATA TTTTCTTCCTGCTTGTACCCCCAATGTCGTTTTCACCAACAACATGCCTG ACTTCTCTCCCTATAATGCTCCGAAAGATTGCTAGCAGCTATGCGGGGCC AGCAGGGGTGATCAGCTGGACCCTTGCTGGACTTGGTTGCATGCTTAGTG GTCTGTCTTACGCGGAGCTGTCATCCATGATCCCCTCTGAAGGTGGGGCC TATGCATACGCCTATGTGGCTCTTGGAGAACTCCCTGCCATGCTCACCGG GTGGTTATTGACTCTAGAGGTAGGGAACAGC
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Coding sequence (CDS) from alignment at C-tenellus_contig10931:3800..5180+

>mRNA_C-tenellus_contig10931.1.1 ID=mRNA_C-tenellus_contig10931.1.1|Name=mRNA_C-tenellus_contig10931.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=426bp|location=Sequence derived from alignment at C-tenellus_contig10931:3800..5180+ (Choristocarpus tenellus KU2346)
ATGGGAAAGTTCTACTACAATACGCTCTCAGATAACAGGATGGCAGCCTC
CAGGCGATTTGATGGGATCATTGGATCAAGGGCCCTTCTCCGCAAGCCAA
TGCCAGTGGTCCTTGAAGAGGTCACGCAGGACAAACTGGAGAGGCACCTC
ACTCTCTTCGACCTGGTGGTGATTGGTGTAGCTGGTACAATCGGGAGTGG
AATGTTCGCTCTCGTCGGCCTGATTGCTAGCAGCTATGCGGGGCCAGCAG
GGGTGATCAGCTGGACCCTTGCTGGACTTGGTTGCATGCTTAGTGGTCTG
TCTTACGCGGAGCTGTCATCCATGATCCCCTCTGAAGGTGGGGCCTATGC
ATACGCCTATGTGGCTCTTGGAGAACTCCCTGCCATGCTCACCGGGTGGT
TATTGACTCTAGAGGTAGGGAACAGC
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