mRNA_C-tenellus_contig1093.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-tenellus_contig1093.2.1
Unique Name	mRNA_C-tenellus_contig1093.2.1
Type	mRNA
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)

Homology

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BLAST of mRNA_C-tenellus_contig1093.2.1 vs. uniprot
Match: D7FM05_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM05_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 2.020e-28
Identity = 65/107 (60.75%), Postives = 81/107 (75.70%), Query Frame = 1

Query:    1 MYGSTSKTTSVDQSRRLLEDSMQVSNETGQIAGNVMGQLYGQREALETSHARLGEMKDMTDTARSTLKDMENKVLVEMICLYLTIGILVVLIILVVYREVTNSGKLF 321
            MYGST+ T S  QSRRLL+DS+ V NET  +A +VM +L+GQRE LE++  RLG+M+ MTD AR  LK+ME K L + ICLYLTI +L +LI LV+YREVTN G LF
Sbjct:    1 MYGSTTTTPSSAQSRRLLDDSLAVQNETSNMADDVMARLFGQRETLESAQQRLGDMRGMTDEARLHLKEMEQKALRQKICLYLTIALLSILICLVIYREVTNGGHLF 107

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig1093.2.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig1093.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FM05_ECTSI	2.020e-28	60.75	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig1093	contig	C-tenellus_contig1093:7254..10087 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	4952.CAG82636
Preferred name	vti1
PFAMs	V-SNARE,V-SNARE_C
Model size	1820
Max annot lvl	4751\|Fungi
KEGG ko	ko:K08493
KEGG Pathway	ko04130,ko04138,map04130,map04138
Hectar predicted targeting category	other localisation
GOs	GO:0000139,GO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006892,GO:0006896,GO:0006906,GO:0006914,GO:0006996,GO:0007033,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0010008,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016482,GO:0022406,GO:0030133,GO:0030134,GO:0030135,GO:0030173,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031201,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042144,GO:0042147,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048278,GO:0048280,GO:0048284,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0061919,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0090174,GO:0097576,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0098852,GO:0140056
Exons	3
Evalue	1.46e-07
EggNOG OGs	KOG1666@1\|root,KOG1666@2759\|Eukaryota,39STY@33154\|Opisthokonta,3NWBQ@4751\|Fungi,3QQ02@4890\|Ascomycota,3RTXE@4891\|Saccharomycetes
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-22_000410.1
Description	to Saccharomyces cerevisiae VTI1 (YMR197C)
Cds size	324
COG category	U
BRITE	ko00000,ko00001,ko04131

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789155.3802948-CDS-C-tenellus_contig1093:7253..7322	1680789155.3802948-CDS-C-tenellus_contig1093:7253..7322	Choristocarpus tenellus KU2346	CDS	C-tenellus_contig1093 7254..7322 +
1680789155.3932922-CDS-C-tenellus_contig1093:7694..7781	1680789155.3932922-CDS-C-tenellus_contig1093:7694..7781	Choristocarpus tenellus KU2346	CDS	C-tenellus_contig1093 7695..7781 +
1680789155.4015532-CDS-C-tenellus_contig1093:8423..8591	1680789155.4015532-CDS-C-tenellus_contig1093:8423..8591	Choristocarpus tenellus KU2346	CDS	C-tenellus_contig1093 8424..8591 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789155.4103165-UTR-C-tenellus_contig1093:8591..10087	1680789155.4103165-UTR-C-tenellus_contig1093:8591..10087	Choristocarpus tenellus KU2346	UTR	C-tenellus_contig1093 8592..10087 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig1093.2.1	prot_C-tenellus_contig1093.2.1	Choristocarpus tenellus KU2346	polypeptide	C-tenellus_contig1093 7254..8591 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-tenellus_contig1093:7254..10087+
coding sequence from alignment at C-tenellus_contig1093:7254..10087+

protein sequence of mRNA_C-tenellus_contig1093.2.1

>prot_C-tenellus_contig1093.2.1 ID=prot_C-tenellus_contig1093.2.1|Name=mRNA_C-tenellus_contig1093.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=108bp
MYGSTSKTTSVDQSRRLLEDSMQVSNETGQIAGNVMGQLYGQREALETSH
ARLGEMKDMTDTARSTLKDMENKVLVEMICLYLTIGILVVLIILVVYREV
TNSGKLF*

mRNA from alignment at C-tenellus_contig1093:7254..10087+

Legend: CDSpolypeptideUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-tenellus_contig1093.2.1 ID=mRNA_C-tenellus_contig1093.2.1|Name=mRNA_C-tenellus_contig1093.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2834bp|location=Sequence derived from alignment at C-tenellus_contig1093:7254..10087+ (Choristocarpus tenellus KU2346)
ATGTATGGCTCTACGTCGAAAACAACGTCCGTGGACCAGTCGCGACGACT
GTTAGAGGATAGCATGCAGGTATATAGTGTTGCTTCCCCCTTCACTGTCC
CCGTCGCTGTCGTGTTGCAGAATTGTGGAAACCTTTAGGTATAAAGTTTG
AAGTAGGGCTGTTGCAAGAGGAACACGTTGTGCAAGCTTTATTTGAAGAT
AAAAGTCTGTAGTGATGTTGAAATATGTCAGAATAGGAGAGTATTTACTT
CCACTGATGCCGGTCTAGTTGGAGCACCTGTCAGGTTGAAGGATATAAGC
TGCGTCTTTCAAAGGCCTTTGTCTCTACGAGTCGGTGGGTGCATGATTTC
CGTTGTCCGTACTAATATCCACATGATTCAATTTTCTGCATAGCATCATT
TCTCGCTGTGAAATATGCCTCTGACCTGTCATTGATCGTAGGTCTCAAAC
GAGACTGGACAGATTGCGGGTAACGTCATGGGTCAGCTATATGGGCAACG
GGAGGCCCTGGAAACATCTCACGCAAGGGTAAGTTCCTGTGTTTGACTGT
ATGAAAAGAAGTGGGGAGAGGACATGGACTCAACGCTCGTCGTTCAGGTT
TAGCTGTTGAATCCTGATTGGTGGGCAAGGTTGTGCAAGTATGGGTTTGG
CGACTGTGCCTTCAAACGTTGATGCCACAACTCCCAAATGATGATGCCCT
TTCTTCCTTCCTTGCCGCTCCCTTGGTCCCGCTCCTGCTACAAGGGAGCA
CCAGCAACCCCCTTGGTAATGCTTACCATCGTGGTTCCTTCAGAAACTTT
GCTCCCCTCTCTTATACCTACTCATTCTCATTTCCTTAATCCTATGCCCA
CATCTTCGATAGCAATACTTGAAAATACGCTTGATTAATGCTATGGAATG
ACGTTGCCAGTGTGGATGATGCCTACAGAACCTAAGAGGTGTCCACCGCT
GCACAGTTGCTTCAAGTGCAAGTACCACAGTACACGATACGATTGAATCA
AAACAGAATAACACCTGCAACGTGTGAACATACATTCCGAACACCGCCCA
ATGATCAGTCTTCTTATAAAAGCACCTTGAGCAAGATAATACCTCACCTC
CCTTTTCTACGATCTTTTTATGTCTCTATCAAAACTCCCCCTTGCCCCCC
TCTCCTCCACTTCCTCGAAGTTGGGAGAAATGAAGGATATGACAGACACC
GCAAGATCTACATTGAAGGATATGGAAAACAAGGTGCTTGTGGAGATGAT
CTGTCTATACCTAACTATAGGGATATTGGTGGTCTTGATCATTCTAGTGG
TCTACAGGGAAGTCACAAACTCGGGCAAACTATTTTAGAACACAGGCAGG
GGGGAGCGGGGGAGGAGTATGGAGGGGGATACCATGTTGACTTGCCGTGA
TGGCAATGCTTACTTCACTCTTACCTGTTTCATTATGGATATGGTGTGGG
CACTCCCACAACCACTCTGTCTATGTATTTACCATTTCTTTACCATTTTT
TCAGTGGCGATGGATTTGGAGGGAGACATATCATAGCTTTGCTGCCCTTG
GCGTGGTAAAGCTGATAATTATTTTGGGTTAGGGTTAGGGGACAAGGTAG
ATGGTCTAGCTATGGTTGAAGCCTTTGCTCGAAGTTGTAGGTAATATATC
TTACAAGGTGAAGTCAACATTTAAAGCTGATAGAGTGACTATCCTTGACT
GACGGAGGTTAATGCTTCCAAGGAACATTGTATGTGTTTATATTGGTCGT
GTATTGTGATTTGTGCTGCTTTGGTGCTTTGGTACTTTGGTGTGTGTTGC
CTCACATCGGGCTTGTTGGGCAATGTTCAACTGCTGCCTTTCTTTTATCT
GTGCCATGTTCCTGACATCCTTCATAGGGACCAAAACTCGGTGAATGTGT
TTTCTATATTTATATCTCCCTCCACTCTGCAATTTATCGTCAGCAATTTA
ACATTTTATTCTTTTTCTGTGAATGCTTCAAGCAGACTCAGAATGAGTTT
TGTTTAAAAAGAAAGCATTTTCCCTTGGAATAGTGGACCTGGAGAATGAT
ATCACTTGGCCAAGATGTTTTATCAGTTTTCACTGTTTTGTGTAGGTGCT
ACTCTTGCATTTTAGACTATTGCTTTGGTGGTGCAGTGAACAATGGTATC
TCAATATCTAGATGAAGTTGGAGACCGTAGGCCACTACATCATTAGTTCT
CATGGTTGCAGCTGTTTCTGTAAATCTCCTGTTGTCAACTACCATGAATG
CGCAAGTACACAGACCCAAGTTCTGCTATCCTATTGTGCTGCTGCTATTT
TTTTGCACAGAGTTCAAGGTTTTGACTTTGGGGAGGGCTATTCACTGACA
CTTTTTAGTGCCACCTTTTGTCAAGGATACCTCCTCAGGGCCCATTGCAC
CTGAGTCTTGTGAGTTGTACATGTTGTGAAGCAGCTTTTGTTTCCTGCCC
TTAGCCTTGCCTTTGGATAGGACATGATTTATACTTATTTTAGTATTCTG
AGGTACATAGGAGGGATTGTCGTTTTAGTTCTTCATGGTACAACTTAGAA
ATTCACATGGATACAAGTATCTCATTTGTGCTGCCTGCCGTTGCCTTTGA
TAGTGAATGGTTGTTTCTATGGAAAAACGGTTTACTCAAGATAGATGAAG
GAAGATTTACCAGAATGTTTTCATATTTGCTGGATAACAAACATCGTGGA
GCAAAGGGTGCAAAACATTGTCCTGACAATGGGTTTAAGCACATGCCTAT
CCTGAAAGCAATTAATGTTACAGAGCAAATGGACTGGTGATAGTTGGATG
ACTAGAGCAACTCAACCCCATATATTGTCCGGAC

Coding sequence (CDS) from alignment at C-tenellus_contig1093:7254..10087+

>mRNA_C-tenellus_contig1093.2.1 ID=mRNA_C-tenellus_contig1093.2.1|Name=mRNA_C-tenellus_contig1093.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=324bp|location=Sequence derived from alignment at C-tenellus_contig1093:7254..10087+ (Choristocarpus tenellus KU2346)
ATGTATGGCTCTACGTCGAAAACAACGTCCGTGGACCAGTCGCGACGACT
GTTAGAGGATAGCATGCAGGTCTCAAACGAGACTGGACAGATTGCGGGTA
ACGTCATGGGTCAGCTATATGGGCAACGGGAGGCCCTGGAAACATCTCAC
GCAAGGTTGGGAGAAATGAAGGATATGACAGACACCGCAAGATCTACATT
GAAGGATATGGAAAACAAGGTGCTTGTGGAGATGATCTGTCTATACCTAA
CTATAGGGATATTGGTGGTCTTGATCATTCTAGTGGTCTACAGGGAAGTC
ACAAACTCGGGCAAACTATTTTAG