mRNA_C-tenellus_contig10929.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10929.2.1
Unique NamemRNA_C-tenellus_contig10929.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10929.2.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.550e-28
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:    1 GYAGLLVAVSVIRVVEIHFMMVGHTHIKIDQIFSRFSRGIKGKNIFTRTQLGEELQASYTEVPIY 195
            GYAGLLVA  V+RVVEIHFMMVGHTH KIDQ+FSRFSRGIKGKNIFTRT L EEL+ASYTEVP++
Sbjct:  238 GYAGLLVAADVVRVVEIHFMMVGHTHTKIDQVFSRFSRGIKGKNIFTRTHLAEELRASYTEVPVF 302
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BLAST of mRNA_C-tenellus_contig10929.2.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.730e-28
Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 GYAGLLVAVSVIRVVEIHFMMVGHTHIKIDQIFSRFSRGIKGKNIFTRTQLGEELQASYTEVPIY 195
            G+AGLLVA SVIRVVEI+FMMVGHTH+KIDQIFSRFSRGIKGKNIFTRTQL E LQASYTEVP++
Sbjct:   35 GFAGLLVAASVIRVVEINFMMVGHTHMKIDQIFSRFSRGIKGKNIFTRTQLAEVLQASYTEVPVF 99
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BLAST of mRNA_C-tenellus_contig10929.2.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 4.250e-15
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 GYAGLLVAVSVIRVVEIHFMMVGHTHIKIDQIFSRFSRGIKGKNIFTRTQLGEELQASYTEVPIY 195
             + G LVA  VI   E+ F++VGHTHIKIDQ+FSRFS G  G++IFTR+QLGE  + SY E+P++
Sbjct:   59 AFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVH 123
[Close]
BLAST of mRNA_C-tenellus_contig10929.2.1 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 6.330e-15
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 GYAGLLVAVSVIRVVEIHFMMVGHTHIKIDQIFSRFSRGIKGKNIFTRTQLGEELQASYTEVPIY 195
             + G LVA  VI   E+ F++VGHTHIKIDQ+FSRFS G  G++IFTR+QLGE  + SY E+P++
Sbjct:  226 AFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGERFRESYKELPVH 290
[Close]
BLAST of mRNA_C-tenellus_contig10929.2.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.560e-14
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 GYAGLLVAVSVIRVVEIHFMMVGHTHIKIDQIFSRFSRGIKGKNIFTRTQLGEELQASYTEVPIY 195
             + G LVA  VI   E+ F++VGHTHIKIDQ+FSRFS G  G++IFTR+QLGE  + SY E+P++
Sbjct:   59 AFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVH 123
[Close]
BLAST of mRNA_C-tenellus_contig10929.2.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.620e-14
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 GYAGLLVAVSVIRVVEIHFMMVGHTHIKIDQIFSRFSRGIKGKNIFTRTQLGEELQASYTEVPIY 195
             + G LVA  VI   E+ F++VGHTHIKIDQ+FSRFS G  G++IFTR+QLGE  + SY E+P++
Sbjct:  171 AFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVH 235
[Close]
BLAST of mRNA_C-tenellus_contig10929.2.1 vs. uniprot
Match: A0A6H5JTH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTH9_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 4.470e-12
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 GYAGLLVAVSVIRVVEIHFMMVGHTHIKIDQIFSRFSRGIKGKNIFTRTQLGEELQASYTEVPIY 195
             + G LVA  V+   E+ F++VGHT IKID +FSRFS G  G++IFTR+QLGE  + SY E+P++
Sbjct:  333 AFIGGLVAAGVVVSAEVCFLIVGHTLIKIDHVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVH 397
[Close]
BLAST of mRNA_C-tenellus_contig10929.2.1 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.990e-12
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 GYAGLLVAVSVIRVVEIHFMMVGHTHIKIDQIFSRFSRGIKGKNIFTRTQLGEELQASYTEVPIY 195
             + G LVA  VI   E+ F+++GHTHIKIDQ+FSR   G  G++IFT+ QLGE  + SY E+P++
Sbjct:   59 AFIGGLVAAGVIGFAEVCFLILGHTHIKIDQVFSRLFVGTLGRSIFTKIQLGELFRESYKELPVH 123
[Close]
BLAST of mRNA_C-tenellus_contig10929.2.1 vs. uniprot
Match: A0A6H5KK38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK38_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 6.100e-12
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 GYAGLLVAVSVIRVVEIHFMMVGHTHIKIDQIFSRFSRGIKGKNIFTRTQLGEELQASYTEVPI 192
             + G LVA  VI   E+ F++VGHTH K DQ+FSR S G  G++IFTR QLGE  + SY E+P+
Sbjct:  286 AFIGGLVAAGVIGSAEVCFLIVGHTHTKTDQVFSRLSVGTLGRSIFTRIQLGELFRESYRELPV 349
[Close]
BLAST of mRNA_C-tenellus_contig10929.2.1 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 7.470e-11
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 GYAGLLVAVSVIRVVEIHFMMVGHTHIKIDQIFSRFSRGIKGKNIFTRTQLGEELQASYTEVPI 192
            G+   LV   V+R V + FMMVGHTHI+IDQ+FS F+R +KG  +FTR  L E  +++Y  +P+
Sbjct:  503 GFLAALVGRGVMRSVTLCFMMVGHTHIQIDQVFSCFARSVKGCAVFTREHLAEFFESAYKTLPV 566
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10929.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5JUU1_9PHAE3.550e-2884.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCW3_9PHAE3.730e-2887.69Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN27_9PHAE4.250e-1556.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN7_9PHAE6.330e-1556.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY2_9PHAE1.560e-1456.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA02_9PHAE1.620e-1456.92Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTH9_9PHAE4.470e-1252.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAR9_9PHAE5.990e-1250.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK38_9PHAE6.100e-1253.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJG9_9PHAE7.470e-1148.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10929contigC-tenellus_contig10929:3492..4056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7739.XP_002594671.1
Model size201
Max annot lvl33208|Metazoa
KEGG koko:K19983
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.06e-07
EggNOG OGs2CXPP@1|root,2RYXE@2759|Eukaryota,3A0MY@33154|Opisthokonta,3BPZN@33208|Metazoa
Cds size198
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789155.2894235-CDS-C-tenellus_contig10929:3491..35951680789155.2894235-CDS-C-tenellus_contig10929:3491..3595Choristocarpus tenellus KU2346CDSC-tenellus_contig10929 3492..3595 +
1680789155.30153-CDS-C-tenellus_contig10929:3961..40551680789155.30153-CDS-C-tenellus_contig10929:3961..4055Choristocarpus tenellus KU2346CDSC-tenellus_contig10929 3962..4055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10929.2.1prot_C-tenellus_contig10929.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10929 3492..4055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10929.2.1

>prot_C-tenellus_contig10929.2.1 ID=prot_C-tenellus_contig10929.2.1|Name=mRNA_C-tenellus_contig10929.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=66bp
GYAGLLVAVSVIRVVEIHFMMVGHTHIKIDQIFSRFSRGIKGKNIFTRTQ
LGEELQASYTEVPIYY
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mRNA from alignment at C-tenellus_contig10929:3492..4056+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10929.2.1 ID=mRNA_C-tenellus_contig10929.2.1|Name=mRNA_C-tenellus_contig10929.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=565bp|location=Sequence derived from alignment at C-tenellus_contig10929:3492..4056+ (Choristocarpus tenellus KU2346)
GGATACGCGGGGCTGTTGGTTGCAGTGAGTGTCATTCGTGTTGTCGAGAT
ACATTTTATGATGGTGGGGCACACGCACATCAAAATCGATCAGATCTTCT
CCAGGTAATTAGGCAAGATATATATGCAAGTTCGATAGCCACATAGTGTT
CTTATATGGACAGATACAGCCTCGAGGCTTGCAGCCCACGCTTGTTGCAT
TCCTGGAAGGTTTATGGTTGCACACTGTAATTGATCGATAGGCTTTTGAT
TTCCCCACAACGAAATTTACCTACAAGAGCAACTGCCTAAACTGTTTCGT
AACATACTCTCGAAAAAAAACAATGAACAAAAAATGTACGCATCACGAAA
TTTTATATTGATTTTTCCATATACATGCATCAGAGCATGTGCCGGCATAT
ATATCCTGCTTATCCACGTCGCTTCTTTCGCCCCCGCCTCGAAATTAACT
TGCTTGCATTTCACCTTCAGGTTCTCACGTGGAATAAAAGGCAAAAACAT
ATTCACCAGAACACAGCTGGGTGAAGAGCTGCAGGCCTCTTACACGGAGG
TTCCAATATACTACA
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Coding sequence (CDS) from alignment at C-tenellus_contig10929:3492..4056+

>mRNA_C-tenellus_contig10929.2.1 ID=mRNA_C-tenellus_contig10929.2.1|Name=mRNA_C-tenellus_contig10929.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=198bp|location=Sequence derived from alignment at C-tenellus_contig10929:3492..4056+ (Choristocarpus tenellus KU2346)
GGATACGCGGGGCTGTTGGTTGCAGTGAGTGTCATTCGTGTTGTCGAGAT
ACATTTTATGATGGTGGGGCACACGCACATCAAAATCGATCAGATCTTCT
CCAGGTTCTCACGTGGAATAAAAGGCAAAAACATATTCACCAGAACACAG
CTGGGTGAAGAGCTGCAGGCCTCTTACACGGAGGTTCCAATATACTAC
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