mRNA_C-tenellus_contig10922.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10922.3.1
Unique NamemRNA_C-tenellus_contig10922.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10922.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10922contigC-tenellus_contig10922:2552..3162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size612
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.876323-UTR-C-tenellus_contig10922:2551..28231680789154.876323-UTR-C-tenellus_contig10922:2551..2823Choristocarpus tenellus KU2346UTRC-tenellus_contig10922 2552..2823 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.8923566-CDS-C-tenellus_contig10922:2823..31621680789154.8923566-CDS-C-tenellus_contig10922:2823..3162Choristocarpus tenellus KU2346CDSC-tenellus_contig10922 2824..3162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10922.3.1prot_C-tenellus_contig10922.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10922 2824..3162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10922.3.1

>prot_C-tenellus_contig10922.3.1 ID=prot_C-tenellus_contig10922.3.1|Name=mRNA_C-tenellus_contig10922.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=113bp
LRCLVRQPGGVSFGDLELLLENRVNTSQQVLLSRRQHKSVSHNQRVVTLH
RQLPLVPTVGWAARFGHLAAVWPFLVVAKHPTLAVPLQNWGGATPKSAVF
FKTDCSPKSNCQ*
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mRNA from alignment at C-tenellus_contig10922:2552..3162-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10922.3.1 ID=mRNA_C-tenellus_contig10922.3.1|Name=mRNA_C-tenellus_contig10922.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=611bp|location=Sequence derived from alignment at C-tenellus_contig10922:2552..3162- (Choristocarpus tenellus KU2346)
CTCCGTTGCCTTGTTCGACAACCTGGAGGTGTATCCTTTGGAGACCTTGA
ACTCCTTCTCGAGAACCGAGTCAACACCTCTCAGCAGGTTCTTTTGTCCA
GGAGGCAACATAAGAGTGTATCGCACAACCAACGTGTGGTGACCCTCCAC
AGACAACTCCCCTTAGTCCCCACAGTTGGATGGGCTGCAAGGTTCGGCCA
TCTGGCTGCTGTTTGGCCCTTTCTCGTTGTCGCAAAACACCCTACCCTTG
CTGTGCCACTCCAGAATTGGGGTGGAGCTACCCCAAAAAGTGCCGTATTT
TTCAAAACAGATTGCAGCCCAAAATCAAATTGCCAATAGACAGTGATAGA
GAGCAGATCCGGTGCTTTCACATGGTGTCCTGTTTGCATGGCATCTCGTT
GTGGATTTGGAGTTATGACTCACTGACTGGACGTTGAACAGACTTATGGG
ACAGAGGAGTATATATATAGCCAAATTGTACCATGCATGGTACGATGAAT
CAGGTAGTGATCGTGGCGTCATCTGACTCCTACCATTACCATCAAATAAC
AATTCACCGTGTGAGTCACATCTCTCTCAGTTGTCCAGCTTGGTGATGAG
CCTCCATTCTT
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Coding sequence (CDS) from alignment at C-tenellus_contig10922:2552..3162-

>mRNA_C-tenellus_contig10922.3.1 ID=mRNA_C-tenellus_contig10922.3.1|Name=mRNA_C-tenellus_contig10922.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=339bp|location=Sequence derived from alignment at C-tenellus_contig10922:2552..3162- (Choristocarpus tenellus KU2346)
CTCCGTTGCCTTGTTCGACAACCTGGAGGTGTATCCTTTGGAGACCTTGA
ACTCCTTCTCGAGAACCGAGTCAACACCTCTCAGCAGGTTCTTTTGTCCA
GGAGGCAACATAAGAGTGTATCGCACAACCAACGTGTGGTGACCCTCCAC
AGACAACTCCCCTTAGTCCCCACAGTTGGATGGGCTGCAAGGTTCGGCCA
TCTGGCTGCTGTTTGGCCCTTTCTCGTTGTCGCAAAACACCCTACCCTTG
CTGTGCCACTCCAGAATTGGGGTGGAGCTACCCCAAAAAGTGCCGTATTT
TTCAAAACAGATTGCAGCCCAAAATCAAATTGCCAATAG
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