mRNA_C-tenellus_contig1092.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1092.1.1
Unique NamemRNA_C-tenellus_contig1092.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1092.1.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 289 bits (740), Expect = 3.000e-83
Identity = 179/438 (40.87%), Postives = 229/438 (52.28%), Query Frame = 1 
Query:    7 SKWCHPFVIPPDHHTNRKILNKLSAAEAEYDDGI---GGRAPPEFKIGVRWEHTSGTRSIYLYAKVWVLNKTGVSLAYQSPGMRKQPENRRVGDGHSKAAKRMPKFPLYHTDEDALSFSRDTLSASKLDAPAGMEDSGHGQGLGKDNEERNRGEQTLPLMLHCRSKMLQLMPLAMAYHAQDPPLYLGDPRSQSSESPLPCISFSGRRTRGHHSGTGGGKDYLEGRYQMYFDNPSLQVSLPKELTRPDRRRIHLLTWDDPSEGYMSFIPSKDCIVYVGLDIRLANASVGPPKWLALLGYTRCTHLTATAV-ARPHDTAQCGFAIFRRFHRGMVKALLGPNVDAHGGCGDSITEGREQGVGGGKLPSAMYFVVVVEASAEEIATEVDVGHVVMHRNVKQQVCFYRSHRWRLNPAFSPGDPLYVDRGASYS-VAALPHGAR 1305
            S +C  ++I    HTNR +LN++ + EA +  G    GG   PEFK G  WEHT G R I+LY+KVWVLNKTGVSLAY++    K+       D   K   R P    Y TD D + FSR    A +  +  G + +G G     +      GE   PLML CR+  LQ MP AMA  A    L L + RS  SE PLPC++                       + +Y D P  +V LP+E+    RRR+HLLT    + G ++F PS+DC VY+GLD RL  A  GPPKWLAL G+ R   L  +    +P D A  GF ++ RF RG+    LG N+D  G   D ++E R     GG  P+AMYFVVVV     E   EVD+G V MHR+V +       HRWR+ P F PGDP Y DR +S + V  LP   R
Sbjct: 1586 SDFCKSYIIEAKRHTNRTLLNRMKSKEAVFSHGARGSGGARRPEFKFGAVWEHTPGNRHIHLYSKVWVLNKTGVSLAYRASIPTKE------DDRKEKVFVRRPYNASYRTDGDTMLFSRYMTGAKRCKSFGGGDKTGGGGATASEIG----GEAGFPLMLTCRANTLQTMPYAMADSAVGAALLLSETRSSKSEQPLPCLTVPAADDAXXXXXXXXXXXAESSSWPLYCDYPPARVRLPEEVVSERRRRVHLLTLRSDT-GSVTFTPSRDCRVYIGLDKRLLAADPGPPKWLALQGFERREGLDVSVTDVQPADLAPQGFGLYSRFCRGLSVVPLGQNLDHDG---DGVSERR-----GG--PAAMYFVVVVRVPESEAVGEVDIGPVAMHRSVGKIFDMREHHRWRMKPNFKPGDPCYTDRPSSENTVTGLPEKLR 2002
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BLAST of mRNA_C-tenellus_contig1092.1.1 vs. uniprot
Match: A0A6H5KB17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB17_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 5.050e-75
Identity = 174/434 (40.09%), Postives = 226/434 (52.07%), Query Frame = 1 
Query:    7 SKWCHPFVIPPDHHTNRKILNKLSAAEAEYDDGI---GGRAPPEFKIGVRWEHTSGTRSIYLYAKVWVLNKTGVSLAYQSPGMRKQPENRRVGDGHSKAAKRMPKFPLYHTDEDALSFSRDTLSASKLDAPAGMEDSGHGQGLGKDNEERNRGEQTLPLMLHCRSKMLQLMPLAMAYHAQDPPLYLGDPRSQSSESPLPCISFSGRRTRGHHSGTGGGKDYLEGRYQMYFDNPSLQVSLPKELTRPDRRRIHLLTWDDPSEGYMSFIPSKDCIVYVGLDIRLANASVGPPKWLALLGYTRCTHLTATAV-ARPHDTAQCGFAIFRRFHRGMVKALLGPNVDAHGGCGDSITEGREQGVGGGKLPSAMYFVVVVEASAEEIATEVDVGHVVMHRNVKQQVCFYRSHRWRLNPAFSPGDPLYVDRGASYS-VAALP 1293
            S +C  ++I    HTNR +LN++ + EA +  G    GG   PEFK GV WEHT G R I+LY+KVWVLNKTGVSLAY++    K        D   K   R P    Y TD D + FSR      +  +  G + +G G    ++      GE   PLML C +  LQ MP AMA  A    L L + RS  SE PLPC++          +   G +      + +Y D P  +V LP+E+    RRR+HLLT    + G ++F PS+DC VY+GLD RL  A  GPPKWLAL G+ R   L  +    +P D A  GF ++ RF RG+    LG N+D  G   D ++E R     GG  P+AMYFVVV+     E   EVD+G V MHR+V + V    S R  L      GDP Y DR +S + V  LP
Sbjct:  173 SDFCKSYIIEAKRHTNRTLLNRIKSKEAVFSHGARGSGGARRPEFKFGVIWEHTPGNRHIHLYSKVWVLNKTGVSLAYRASIPTKD------DDRKEKVFVRRPYNASYRTDGDTMLFSRYMTGTKRCKSFGGGDKTGGGGATAREIG----GEAGFPLMLTCHANTLQTMPYAMADSAVGADLLLSETRSSKSEQPLPCLTVPAADDADADAXXXGAES---SSWPLYCDYPPARVRLPEEVLSEGRRRVHLLTLRSDT-GSVTFTPSRDCRVYIGLDKRLLAADPGPPKWLALQGFERREGLDVSVTDVQPADLAPQGFGLYSRFCRGLSVVPLGKNLDHDG---DGVSERR-----GG--PAAMYFVVVLRVPESEAVGEVDIGPVAMHRSVAKIVSSEASVRGFL------GDPCYTDRPSSENTVTGLP 576
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1092.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB77_ECTSI3.000e-8340.87SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KB17_9PHAE5.050e-7540.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1092contigC-tenellus_contig1092:2202..4899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LB77
PFAMsACBP,RIC1
Model size1305
Max annot lvl2759|Eukaryota
KEGG koko:K20476
Hectar predicted targeting categoryother localisation
Exons7
Evalue4.92e-84
EggNOG OGsKOG2006@1|root,KOG2006@2759|Eukaryota
DescriptionRab guanyl-nucleotide exchange factor activity
Cds size1305
COG categoryS
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1092.1.1prot_C-tenellus_contig1092.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1092 2202..4899 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.718475-CDS-C-tenellus_contig1092:2201..23121680789154.718475-CDS-C-tenellus_contig1092:2201..2312Choristocarpus tenellus KU2346CDSC-tenellus_contig1092 2202..2312 -
1680789154.7306485-CDS-C-tenellus_contig1092:2511..28901680789154.7306485-CDS-C-tenellus_contig1092:2511..2890Choristocarpus tenellus KU2346CDSC-tenellus_contig1092 2512..2890 -
1680789154.743293-CDS-C-tenellus_contig1092:3204..32561680789154.743293-CDS-C-tenellus_contig1092:3204..3256Choristocarpus tenellus KU2346CDSC-tenellus_contig1092 3205..3256 -
1680789154.7524152-CDS-C-tenellus_contig1092:3313..34411680789154.7524152-CDS-C-tenellus_contig1092:3313..3441Choristocarpus tenellus KU2346CDSC-tenellus_contig1092 3314..3441 -
1680789154.762556-CDS-C-tenellus_contig1092:3513..36861680789154.762556-CDS-C-tenellus_contig1092:3513..3686Choristocarpus tenellus KU2346CDSC-tenellus_contig1092 3514..3686 -
1680789154.7725666-CDS-C-tenellus_contig1092:3791..40611680789154.7725666-CDS-C-tenellus_contig1092:3791..4061Choristocarpus tenellus KU2346CDSC-tenellus_contig1092 3792..4061 -
1680789154.7864351-CDS-C-tenellus_contig1092:4707..48991680789154.7864351-CDS-C-tenellus_contig1092:4707..4899Choristocarpus tenellus KU2346CDSC-tenellus_contig1092 4708..4899 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1092.1.1

>prot_C-tenellus_contig1092.1.1 ID=prot_C-tenellus_contig1092.1.1|Name=mRNA_C-tenellus_contig1092.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=435bp
MYSKWCHPFVIPPDHHTNRKILNKLSAAEAEYDDGIGGRAPPEFKIGVRW
EHTSGTRSIYLYAKVWVLNKTGVSLAYQSPGMRKQPENRRVGDGHSKAAK
RMPKFPLYHTDEDALSFSRDTLSASKLDAPAGMEDSGHGQGLGKDNEERN
RGEQTLPLMLHCRSKMLQLMPLAMAYHAQDPPLYLGDPRSQSSESPLPCI
SFSGRRTRGHHSGTGGGKDYLEGRYQMYFDNPSLQVSLPKELTRPDRRRI
HLLTWDDPSEGYMSFIPSKDCIVYVGLDIRLANASVGPPKWLALLGYTRC
THLTATAVARPHDTAQCGFAIFRRFHRGMVKALLGPNVDAHGGCGDSITE
GREQGVGGGKLPSAMYFVVVVEASAEEIATEVDVGHVVMHRNVKQQVCFY
RSHRWRLNPAFSPGDPLYVDRGASYSVAALPHGAR
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mRNA from alignment at C-tenellus_contig1092:2202..4899-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1092.1.1 ID=mRNA_C-tenellus_contig1092.1.1|Name=mRNA_C-tenellus_contig1092.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2698bp|location=Sequence derived from alignment at C-tenellus_contig1092:2202..4899- (Choristocarpus tenellus KU2346)
ATGTACAGCAAGTGGTGTCACCCATTTGTAATCCCTCCAGATCATCACAC
CAATCGGAAAATACTGAACAAGCTCTCTGCCGCTGAGGCTGAGTACGATG
ATGGTATCGGTGGAAGGGCTCCCCCAGAGTTCAAGATTGGAGTGCGCTGG
GAACACACCTCAGGAACAAGAAGTATTTACCTATATGCCAAGGTTCAAGT
GGCAAATGTATTAGAGAGAAATGTGTGAACGAAAGGGGACCAAAGAAGTG
GTAACAAGGGTTCATTTGCTAGAATTATTGCAAATCCTGCCCTCCTGCCT
CTTTTGTTGAAGAATTGGAAATGGTTTAATGTTGAGAAGATGCTAGTCTT
CATTTTATGTTAGAGGTGCTATTTCTCTAATCGATCTTTGCCTGTGAAGA
CTTACCCTTTCCTATTCCTCCTGTATGATTTTTTTTGCCAGGATTAGAAC
TGGAGCTCTTCAGGAATTTAACCATGTCTCAAACATCATGCTTTTTGTTA
TTCCTACCTTGACCCACCTGACTACACCTCCTCCTTCCCATTTTTTTTTA
CCACTGGTGTTCTTGCTCCCTCCCCTTTCCACTCCTTTCTTTCCTTGGTC
GAAAGATTGTAAGTTGCATTCGATCCAGTAGGGTCTCATCTCTCCATTTT
TGAATAATCAAGGTTGGTAAGTCCGCCAACACATCATTTTTTAATTTCTT
CTTTTTGTCCTTTGTGGTTAAGGTTGTAGTCACCGTCAGTACAGAATGCT
ATTATGTCATTCATAGCTCTGATATTTTGGAAGTTAGCATGTAATCTCTG
TATTTCTATCTGGACCTCCCTCGTTGCACTTCCTGCAGGTATGGGTCCTG
AACAAGACTGGCGTGTCACTAGCTTACCAATCCCCAGGAATGCGGAAACA
ACCCGAAAATAGACGAGTTGGAGATGGACATAGCAAAGCAGCAAAGCGTA
TGCCGAAGTTTCCGCTGTACCACACGGATGAGGATGCCCTTTCTTTCTCT
CGGGACACCCTCAGTGCTAGTAAACTAGATGCACCAGCAGGGATGGAGGA
TAGTGGACATGGCCAAGGGCTGGGAAAGGATAATGAGGAAAGGAACAGAG
GAGAACAAGTGGGGGAGAGGATGGAAGAGATGGGAGAGGTGGAATGGGTA
GGAAACGAAAAGGGGGAGGAAGAGGAAGTCAAGGCTGAGCCAGTGGTCTT
TGGAGAAATGGAGACGCTTCCCTTGATGTTGCACTGCCGCAGCAAGATGC
TTCAGCTGATGCCATTAGCCATGGCATACCACGCCCAAGATCCTCCCCTT
TACCTTGGCGATCCCCGCTCCCAGAGCTCTGAATCCCCCCTGCCATGTAT
TTCTTTCTCGGGTAGGAGGACCAGAGGCCACCACAGGTATTCCAGCAGTA
GCAGTGTGCTCAGCAAGGGAAGCATGGACAGGGTTGATGTAATTGGAGGT
AGGCGGAGTGGGACTGGAGGAGGAAAGGATTATCTTGAGGGACGATATCA
AATGTACTTTGATAACCCTTCTTTACAAGTTAGTCTTCCTAAGGAGCTCA
CCAGGCCAGATCGAAGGAGGATTCACCTGCTGACCTGTGGCAAGGATGGA
TCAATGGGGAATGAATTTGGCCGACTGATGGGTGGAGGTGGAGGGGACGA
TCCATCTGAAGGGTACATGTCTTTTATACCATCTAAGGATTGCATGTGAG
AGAATAATTTTGAAAGCAATGGAGCATAGGGGGGTGAGGGGGGTTGAGGA
GGGCAGTGGAAAGGAGGAAGGGTCAATAGAAATATTTAATGGTGGTTGTG
GGTACTATCATTGAAGGGGGTGTACTTTGGTATGTTTTCTTATTTGTTTC
AACCTTTCTCAGACTCTCCTCATACCCATTCCATTTGATACCCCAAGCTA
CTAATCACATCCACAAACATTGAACTTTGTACGGAACCCATTTCACCTAT
TCCATGAGACAAGGTTCTTCATCATGTCGCACCACCCCTTGACACTTCTA
TTTGTGCAGCGTGTATGTTGGATTGGACATCCGACTGGCGAATGCTTCTG
TTGGGCCCCCTAAATGGCTAGCACTTCTTGGTTACACTCGCTGCACTCAT
CTTACAGCTACTGCAGTAGCCCGCCCACATGATACTGCCCAATGTGGATT
TGCTATCTTCCGACGCTTTCACCGGGGCATGGTAAAAGCACTCCTGGGAC
CTAACGTGGATGCCCATGGGGGTTGTGGTGATTCAATTACTGAAGGGAGG
GAACAAGGGGTTGGAGGTGGTAAGCTCCCATCGGCCATGTACTTTGTTGT
AGTGGTGGAGGCCTCTGCAGAGGAGATTGCGACAGAGGTGGACGTGGGTC
ATGTAGTCATGCATAGGAATGTCAAGCAGCAGGTATGTGTGGCAAGAAGA
GATATTGGAGAAGGGGAGGGCAAGTGTTAAGAGTGAGAAAGGAAGGCAGG
ATATGAAACTGGGAAAAATCGAAAGGGGGGTAATGGAAAACAATGGACTC
GCTTGTGTTACCATACACTGCATCCCAACACTTCCCTCTATCCCTCTATT
GCCTACTCCCTCATTTTATCCGTGTACCCTCCTACAGTTTTACCGTAGTC
ACCGCTGGCGCCTAAATCCTGCCTTTTCCCCTGGGGATCCACTCTATGTT
GACCGAGGTGCTTCTTACTCCGTGGCGGCATTACCACATGGGGCGAGA
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Coding sequence (CDS) from alignment at C-tenellus_contig1092:2202..4899-

>mRNA_C-tenellus_contig1092.1.1 ID=mRNA_C-tenellus_contig1092.1.1|Name=mRNA_C-tenellus_contig1092.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1305bp|location=Sequence derived from alignment at C-tenellus_contig1092:2202..4899- (Choristocarpus tenellus KU2346)
ATGTACAGCAAGTGGTGTCACCCATTTGTAATCCCTCCAGATCATCACAC
CAATCGGAAAATACTGAACAAGCTCTCTGCCGCTGAGGCTGAGTACGATG
ATGGTATCGGTGGAAGGGCTCCCCCAGAGTTCAAGATTGGAGTGCGCTGG
GAACACACCTCAGGAACAAGAAGTATTTACCTATATGCCAAGGTATGGGT
CCTGAACAAGACTGGCGTGTCACTAGCTTACCAATCCCCAGGAATGCGGA
AACAACCCGAAAATAGACGAGTTGGAGATGGACATAGCAAAGCAGCAAAG
CGTATGCCGAAGTTTCCGCTGTACCACACGGATGAGGATGCCCTTTCTTT
CTCTCGGGACACCCTCAGTGCTAGTAAACTAGATGCACCAGCAGGGATGG
AGGATAGTGGACATGGCCAAGGGCTGGGAAAGGATAATGAGGAAAGGAAC
AGAGGAGAACAAACGCTTCCCTTGATGTTGCACTGCCGCAGCAAGATGCT
TCAGCTGATGCCATTAGCCATGGCATACCACGCCCAAGATCCTCCCCTTT
ACCTTGGCGATCCCCGCTCCCAGAGCTCTGAATCCCCCCTGCCATGTATT
TCTTTCTCGGGTAGGAGGACCAGAGGCCACCACAGTGGGACTGGAGGAGG
AAAGGATTATCTTGAGGGACGATATCAAATGTACTTTGATAACCCTTCTT
TACAAGTTAGTCTTCCTAAGGAGCTCACCAGGCCAGATCGAAGGAGGATT
CACCTGCTGACCTGGGACGATCCATCTGAAGGGTACATGTCTTTTATACC
ATCTAAGGATTGCATCGTGTATGTTGGATTGGACATCCGACTGGCGAATG
CTTCTGTTGGGCCCCCTAAATGGCTAGCACTTCTTGGTTACACTCGCTGC
ACTCATCTTACAGCTACTGCAGTAGCCCGCCCACATGATACTGCCCAATG
TGGATTTGCTATCTTCCGACGCTTTCACCGGGGCATGGTAAAAGCACTCC
TGGGACCTAACGTGGATGCCCATGGGGGTTGTGGTGATTCAATTACTGAA
GGGAGGGAACAAGGGGTTGGAGGTGGTAAGCTCCCATCGGCCATGTACTT
TGTTGTAGTGGTGGAGGCCTCTGCAGAGGAGATTGCGACAGAGGTGGACG
TGGGTCATGTAGTCATGCATAGGAATGTCAAGCAGCAGGTATGTTTTTAC
CGTAGTCACCGCTGGCGCCTAAATCCTGCCTTTTCCCCTGGGGATCCACT
CTATGTTGACCGAGGTGCTTCTTACTCCGTGGCGGCATTACCACATGGGG
CGAGA
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