mRNA_C-tenellus_contig10910.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10910.1.1
Unique NamemRNA_C-tenellus_contig10910.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10910.1.1 vs. uniprot
Match: A0A6H5JHS7_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHS7_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.210e-24
Identity = 57/100 (57.00%), Postives = 68/100 (68.00%), Query Frame = 2 
Query:  476 PGYEGVCCPICLSPLMNG----KEIYTTQQCRHDFHRSCLKENRRAENTGCPCCRGFLEKGLTPSPTSSERHAIDVMMREEDQREAIRRAASRARNAVTR 763
            P   G  C ICLSPL       KE+YT + C+H FHR CL ENRRA NTGCP CRG LE+GLTP  T++ER A  +  +++DQREAIR AA RAR A+ R
Sbjct:   95 PACRGGSCAICLSPLKKPSGAKKEVYTVRVCQHMFHRVCLVENRRAGNTGCPYCRGDLERGLTPEATAAERKARVLAAQQQDQREAIRNAAGRARMALAR 194
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BLAST of mRNA_C-tenellus_contig10910.1.1 vs. uniprot
Match: D7G207_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G207_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 9.550e-17
Identity = 54/122 (44.26%), Postives = 66/122 (54.10%), Query Frame = 2 
Query:  422 GNTQESWWSTYNYVTPKAPGYEGVCCPICLSPLMNGK----------EIYTTQQCRHDFHRSCLKENRRAENTGCPCCRGFLEKGLTPSPTSSERHAIDVMMREEDQREAIRRAASRARNAV 757
            GN+++S       V   A  +EG C  ICL PL +            E+Y  Q C H FHR+CL ENRRA N GCPCCRG LE+GLTP+PT++ER A            A R+A S AR A 
Sbjct:   11 GNSEQS--GEGEEVKTTAGCWEGDCV-ICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRAT-----------ADRQALSEARGAT 118
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BLAST of mRNA_C-tenellus_contig10910.1.1 vs. uniprot
Match: A0A6H5L4L7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L7_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.620e-15
Identity = 47/97 (48.45%), Postives = 55/97 (56.70%), Query Frame = 2 
Query:  497 CPICLSPLMNGK----------EIYTTQQCRHDFHRSCLKENRRAENTGCPCCRGFLEKGLTPSPTSSERHAIDVMMREEDQREAIRRAASRARNAV 757
            C ICL PL +            E+Y  Q C H FHR+CL ENRRA N GCPCCRG LE+GLTP+PT++ER A            A R+A S AR A 
Sbjct:  208 CVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRAT-----------ADRQALSEARGAT 293
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BLAST of mRNA_C-tenellus_contig10910.1.1 vs. uniprot
Match: D7FR64_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR64_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.540e-11
Identity = 34/72 (47.22%), Postives = 42/72 (58.33%), Query Frame = 2 
Query:  467 PKAPGYEGVCCPICLSPLMNG------KEIYTTQQCRHDFHRSCLKENRRAENTGCPCCRGFLEKGLTPSPT 664
            P    Y G  C ICLSPL         + +YT + C H+FHR CL  NR    T CPCCRG +E+GL+P+PT
Sbjct:   72 PTPEPYGGEDCAICLSPLRRPGGSVPERPVYTIRACEHNFHRDCLVANRAEGRTTCPCCRGEIERGLSPAPT 143
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10910.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JHS7_9PHAE2.210e-2457.00RING-type domain-containing protein n=2 Tax=Ectoca... [more]
D7G207_ECTSI9.550e-1744.26RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L4L7_9PHAE1.620e-1548.45RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FR64_ECTSI1.540e-1147.22RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10910contigC-tenellus_contig10910:2..3084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog28532.XP_010523805.1
PFAMsGUB_WAK_bind,WAK_assoc,zf-RING_2
Model size2054
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0032446,GO:0036211,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Exons3
Evalue1.9e-06
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,37HJH@33090|Viridiplantae,3GA88@35493|Streptophyta,3HSMM@3699|Brassicales
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-18_003860.1
DescriptionBEST Arabidopsis thaliana protein match is Ring U-Box superfamily protein (TAIR
Cds size645
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.3913064-UTR-C-tenellus_contig10910:1..12381680789154.3913064-UTR-C-tenellus_contig10910:1..1238Choristocarpus tenellus KU2346UTRC-tenellus_contig10910 2..1238 -
1680789154.4278657-UTR-C-tenellus_contig10910:2912..30841680789154.4278657-UTR-C-tenellus_contig10910:2912..3084Choristocarpus tenellus KU2346UTRC-tenellus_contig10910 2913..3084 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.400572-CDS-C-tenellus_contig10910:1238..12961680789154.400572-CDS-C-tenellus_contig10910:1238..1296Choristocarpus tenellus KU2346CDSC-tenellus_contig10910 1239..1296 -
1680789154.4083867-CDS-C-tenellus_contig10910:2060..22601680789154.4083867-CDS-C-tenellus_contig10910:2060..2260Choristocarpus tenellus KU2346CDSC-tenellus_contig10910 2061..2260 -
1680789154.4174025-CDS-C-tenellus_contig10910:2525..29121680789154.4174025-CDS-C-tenellus_contig10910:2525..2912Choristocarpus tenellus KU2346CDSC-tenellus_contig10910 2526..2912 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10910.1.1prot_C-tenellus_contig10910.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10910 1239..2912 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10910.1.1

>prot_C-tenellus_contig10910.1.1 ID=prot_C-tenellus_contig10910.1.1|Name=mRNA_C-tenellus_contig10910.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=215bp
MELRSRDVNVREVIDLTSPGQYSNHQVSSLEEGDLVQRRAHGVEDCDGIT
ERVFAGGANELSRQFEARMSILTPCKQITSRGDGNTQESWWSTYNYVTPK
APGYEGVCCPICLSPLMNGKEIYTTQQCRHDFHRSCLKENRRAENTGCPC
CRGFLEKGLTPSPTSSERHAIDVMMREEDQREAIRRAASRARNAVTRRNV
LRSTTSVEGPVYHW*
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mRNA from alignment at C-tenellus_contig10910:2..3084-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10910.1.1 ID=mRNA_C-tenellus_contig10910.1.1|Name=mRNA_C-tenellus_contig10910.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3083bp|location=Sequence derived from alignment at C-tenellus_contig10910:2..3084- (Choristocarpus tenellus KU2346)
TCAAAAACGCAAGAACGGTTGCGCCGCCTTATCGTGAATTTTGCGCGAGC
AACATCTAACCGTTATTACTGTTGATGATTTGGTTGAATAGTACCCCTCA
TATGTTAACAGGGTCGTCTGTCGTACAATAGGGAAGACAAGCACGCACGT
AGGACGCCCCCTGAGTTGGAACATGGAGCTCAGATCGAGGGATGTAAATG
TAAGGGAAGTAATTGACCTGACTTCACCAGGGCAATACTCTAACCATCAG
GTCAGCTCCCTTGAGGAAGGAGACCTCGTACAAAGGAGAGCACATGGTGT
TGAAGATTGTGATGGGATCACGGAAAGAGTCTTCGCTGGTGGTGCCAATG
AACTCAGTCGCCAATTCGAAGCTAGGATGAGCATTCTCACCCCCTGCAAA
CAAATTACATCCCGAGGTGACGGCAATACACAGGAAAGCTGGTGGTCAAC
CTACAACTATGTCACTCCCAAGGCCCCTGGTTATGAGGGCGTCTGCTGCC
CGATATGTCTTAGCCCCTTGATGAATGGCAAAGAGATCTATACAACACAA
CAATGCCGAGTGAGTTGAGTGGATACACGTGATATAGTGCCATAAGTTTT
GCTCGTGGTGAAGTGACCACCTCCTCAATACAGGGATTGACCTGACCATA
ATTAATGACCGACAGTGTCGGATCACCCCCTTATAGATGCGTTCCAGAAT
CTCATCTCTGAGCACTGGATTCAGTCAGGAATATAGTACACTCTTGAAGA
GCTCATGACGCTCCCTTAGCCCCTACCAAAGCTCAATCCCTCTCCCCTCC
CCCTCCTTCTGTCCGCACGCGAAGCACGATTTTCATCGGAGCTGTTTGAA
GGAGAACCGACGGGCAGAGAACACAGGCTGCCCCTGTTGCAGAGGGTTCC
TAGAGAAAGGTCTGACCCCAAGTCCAACCTCCTCTGAGAGGCACGCCATT
GATGTTATGATGAGGGAAGAAGATCAACGGGAGGCGATCAGGAGAGCAGC
GAGCAGGGCACGAAACGCCGTCACGTGAGTTGCGTCCAATGTTTCGATGT
TCCTAATGCCCTTGTTGCGAGAACTCTTGCTGTGTTGTGGTAAGAATGCA
TTGTGATTCTTGCATCACCGTATCTTCGACGTTCAATATTATATTTGAAG
AGTGAAAGTATCTTAGAGGGTTCTAGTTTTGCCCTGTTTGGGGCTTGGCT
TCCCTCGGGGTTTTTTTATGACATTTTCCTACTCCGAAATATTTCGGAGA
AGGTAAAATGTGTACGTTATGAAAAGGTGTGTCCGGAACAAGGATATTGA
CACTCCCTAACAAACACAATAGCCAAAATTACATCAAATTGCAACATTGG
ATTTTGACCCCAAATGGACGCGGTTCTACCCTCTAAGTCACTGCTGCATA
GGCATGTGCTAGGCAGCAGGCAACAGCATAGTTGTCAAATAAAAAAATGT
GAAGCCACTGACCCTGTTCACAATTTAGTTTTGTTTCAAGACGGTGGAAG
TGTTGTGGAAACAAAGGCACAGAAAGTATTTGCGATGGCTACGTTAGCCA
ACTACCATTAGAAAAGACCTGGAGAAACTAGTCTTAATTGTATGTGATGA
GAACTATACCCCTCCAAATTTTCAGACTCTTTCCCTCATCATTGTTTTGT
ATGAAGGGGTTGGACAAGTCACCTCACAAACTTGTTGGTCCTGCTCTATG
CTACCAATGTATGTTCATGGCCAACAACACCCCTAACTGCCCGCTCTTCT
CTTCCTTCTGCTGCTGTGATGACCCTTTGTTTCTTCAGCAGAAGAAACGT
GCTGAGGAGCACAACGTCAGTGGAAGGCCCTGTTTACCACTGGTAAATAA
TGATGCACATGTAGAAGCTCTATGGTTACATAGTTCCCTTCCTTTCCCAC
CCTGCCTCCCACTGACAAAAAAAAAAAAAATTGCTTCCCATCACTCAAGA
TCCTCCACGCCAATCTGGGAACTATTGCTGCTCATCCTATATGTTTGTCA
ATTAATTCGCCTGCTGTATTTTCACCATTCTATAATCATATAATGAACAG
GATGGTATAGGTGGATGAGCAAATCCCATATCTGTGTAACATGTATGTAT
ATCTTGAGGTCCACTCAACTCATGTTGAGCATCTCCATCAAAGGCTTTTG
TAAATTGTTCATTGGCTGTACTTTTCTTGGGTTGTTTTTTGTTTTTTGGG
TCGTGTGTCACAACACACTCCGCTGGGTGAGAAAAACAACACATGTATTT
GTGTATCTCTATTTTTCTTATTTTTTGTATTGCACAATCATGATGTCACC
TACAATATTCTAGTCATTTTCTTGTATGATTTCACAGAATATCGTACAAG
CTGTACAATACCGTTTTGGAGGCTGCTTTATCCAGCTGCAGCATTGGAAA
AGCATTGCTACTTCTCACCCCCCTGGCCCATTGGCTTCTGTATAGTGTTT
TTTTATTGGGGAGTTGCTGCCTGACGTGATATGGCGTTGTTTCGTGTGGT
GTTTTGAGTTGTGGGGGGTGGTATGTGCCTGTGGTGACATCTGCTACACT
TACCATCTCTCATATGCCTTTTTGAGTGTGCATCAAGGGGTTATTGGATT
GGACAGATGGGGGTGGAAAAATGTACAATAATGCCCCCCCCCCACTCACT
GCTTATCCCACTATCCTTCAAGAGAGATCGTGTGATATATCCATACCTTG
TTCTTCAAACGATTTGTGTTGTGTGTGAGCATTGGTTAGGGTTAGGGTTA
GGGTTAGGGCTAGGTATCCAGATGTAGTGCTGTTGTAGGACTCTTATGCA
ATGTTGTAGGGACAAAGGGACGATTTGTTACCTGAATATATGCATGCCTG
TATGTCCATTACCCTCCCCTCCTTCCCCAACTCAAGAGTCTACAAGATAG
GAGGGAGGGTTTGGTTTCCACATTGAACAATAGTTCCTGAATCTTGAGGA
GAATATCATCCATCAATGTGGGGTTGCCCTTCGGTGGTATAAAGTGGCAT
AATATTGTTCCTATTAGTACCTGTTGTTGAAACCTGAATCGAATGCATTG
TATATGATACATAGACTACGAAGGAAGAGGAAT
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Coding sequence (CDS) from alignment at C-tenellus_contig10910:2..3084-

>mRNA_C-tenellus_contig10910.1.1 ID=mRNA_C-tenellus_contig10910.1.1|Name=mRNA_C-tenellus_contig10910.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=645bp|location=Sequence derived from alignment at C-tenellus_contig10910:2..3084- (Choristocarpus tenellus KU2346)
ATGGAGCTCAGATCGAGGGATGTAAATGTAAGGGAAGTAATTGACCTGAC
TTCACCAGGGCAATACTCTAACCATCAGGTCAGCTCCCTTGAGGAAGGAG
ACCTCGTACAAAGGAGAGCACATGGTGTTGAAGATTGTGATGGGATCACG
GAAAGAGTCTTCGCTGGTGGTGCCAATGAACTCAGTCGCCAATTCGAAGC
TAGGATGAGCATTCTCACCCCCTGCAAACAAATTACATCCCGAGGTGACG
GCAATACACAGGAAAGCTGGTGGTCAACCTACAACTATGTCACTCCCAAG
GCCCCTGGTTATGAGGGCGTCTGCTGCCCGATATGTCTTAGCCCCTTGAT
GAATGGCAAAGAGATCTATACAACACAACAATGCCGACACGATTTTCATC
GGAGCTGTTTGAAGGAGAACCGACGGGCAGAGAACACAGGCTGCCCCTGT
TGCAGAGGGTTCCTAGAGAAAGGTCTGACCCCAAGTCCAACCTCCTCTGA
GAGGCACGCCATTGATGTTATGATGAGGGAAGAAGATCAACGGGAGGCGA
TCAGGAGAGCAGCGAGCAGGGCACGAAACGCCGTCACCAGAAGAAACGTG
CTGAGGAGCACAACGTCAGTGGAAGGCCCTGTTTACCACTGGTAA
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