mRNA_C-tenellus_contig1090.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1090.4.1
Unique NamemRNA_C-tenellus_contig1090.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1090.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1090contigC-tenellus_contig1090:10778..12676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size308
Hectar predicted targeting categoryother localisation
Exons3
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.0314279-CDS-C-tenellus_contig1090:10777..108681680789154.0314279-CDS-C-tenellus_contig1090:10777..10868Choristocarpus tenellus KU2346CDSC-tenellus_contig1090 10778..10868 +
1680789154.0406413-CDS-C-tenellus_contig1090:11057..111791680789154.0406413-CDS-C-tenellus_contig1090:11057..11179Choristocarpus tenellus KU2346CDSC-tenellus_contig1090 11058..11179 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.0501318-UTR-C-tenellus_contig1090:11179..111931680789154.0501318-UTR-C-tenellus_contig1090:11179..11193Choristocarpus tenellus KU2346UTRC-tenellus_contig1090 11180..11193 +
1680789154.0607586-UTR-C-tenellus_contig1090:12595..126761680789154.0607586-UTR-C-tenellus_contig1090:12595..12676Choristocarpus tenellus KU2346UTRC-tenellus_contig1090 12596..12676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1090.4.1prot_C-tenellus_contig1090.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1090 10778..11179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1090.4.1

>prot_C-tenellus_contig1090.4.1 ID=prot_C-tenellus_contig1090.4.1|Name=mRNA_C-tenellus_contig1090.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=71bp
MPLSLCEYTAHPSIPPQQHRTLSKQTLVPIDPPPLELHRLANRRTPQPSY
SLVCPHPQAWHSRETIFSAC*
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mRNA from alignment at C-tenellus_contig1090:10778..12676+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1090.4.1 ID=mRNA_C-tenellus_contig1090.4.1|Name=mRNA_C-tenellus_contig1090.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1899bp|location=Sequence derived from alignment at C-tenellus_contig1090:10778..12676+ (Choristocarpus tenellus KU2346)
ATGCCATTGAGTCTATGCGAATACACAGCACATCCGTCCATTCCCCCCCA
ACAACATAGAACTCTCAGCAAGCAGACCCTGGTACCCATAGGTAATGTTA
TCCAAAATAGCATAATCCTTTCGTACTCAACGGAACATATATACGCAATG
TCTTCCTTGGCTACGATACCTGTCAAATTATCTTCCACCAATAATACCCC
AGATTCTTAGCAATCGTAGTCAACTTTCGTCTTTGTCGCTCTGCCCTTCC
CATACCCCAACACCCACCACTGCTTGTCAGACCCGCCACCGCTAGAGCTC
CATCGGCTTGCGAATCGACGTACTCCCCAGCCATCATATTCGCTAGTCTG
CCCACATCCTCAAGCATGGCATAGTCGAGAGACTATATTTTCAGCATGTT
AAGTGAAATTGTCCAGGTGTGTACAAGCGGAGGAAGAGGACAACTGATGA
GGATGTATGTCAGTCGGACACACATTACAAATCATACACGACAACAGCTG
TTTGTTACCAGACTATCTCTTGATTCGGGACATACCATCTCACTAACTAC
AGATAACTAATTACATCATGAATGAGGTTCTCAGGGTTCTGATAATCAAA
CATCATAGAGGGGAACCAAGCACTATAAAGCACAATCTGGTGTTTGTTGA
GGAGTTCCCAGACTCTTGTGCCAGAAATAGATATCCCCACTCTTAATTTC
GTTTGTTCACAGAGAAGATGACCATCTCGGTGAGCACGATTTACGTAGTT
GTGATTTTCTTCTCAAGAACAGAGTTCTATCATTACCTGATCAACATCGC
CACAATAATCCCCTACACGGTCCACAACCATACAACCCATTTTGTCTGTA
CAAAATACAACTTCGCCAGATGAAGTACAAAATGACACTTCTGGTCTTCA
ATCACACAATGTACTACAGTCAACTCTCATCCATTTAACATAGGCCAATC
AAGTACATCAAAATGTATCATAACAAACAAAGAACAAATGCTAGAATAAA
TCCATGGGAGCAGTTTGTTTTTACTGTGAGGTCTAGTTTAATCAGTCAGA
AATTGTACTCCAATTCGAATATGTAATGTGACTAATATTAGTGCTTGCCT
ATGGACTGATGCAGTGGGTGATACAAAACTTGCTTCTACTTTGCATTTGT
TTAGTGAATGACGTGCACAATTATTAGGGCAGCTACTTGGGCGTACAATG
TTACCAAGATTCCATTATCTTTCAACGTTTGGGAGGAGATGGGCACCTTG
AGGGGGCGATAGTCCCAACTGGCGGTCATGTATGAAAATTGAGATGTGGA
TATTTACATTCTTTGGCTTTGCCTCCACCATCCAGTGGTTGAGTTAGGTG
ACAGGGGAAATGGTGCATTAGGGTGAGGACCAACATTGTGGGATTAATTT
TTTCAATTGTCTAATTTTTCGTTCCAATTGGGTGCAATTCCAGACACACG
GCTTACAACGCAAATTTTGTTCTCAATCAAGACTTTTTGTTGTCCTAAAT
CCCTATCAGAAACTTTGCAGATGCATAATCAGACACCGACCCTACTTTGT
GGGCTCAAAATCCTAGCACACACAAGACTTATGAGGAGCAAGCACGCTGC
ACAATGTACTCAATACCAGCATGGATCACCACAATGTGAATTGAGCGAGA
GGTACAGAGGTCCAGATCCACAAAACTGAACAATAAAATGTCCCTTGGCC
ATCCAGCACCTTCCCTCCAGTCTCTTTACCTCCCCTACTACCCCCCATTC
ACCCACTGCTTCTTACCTTACTATCAATTTCCACCTGACCTCCCTCCACA
TGTTTTTGTCCAGTGCAGTTGTTTCCAGCCATCACCTGCTCGAAGGTTCC
CCTCACAGCCCCCTCAGAAGGCAATGCAGTCATATGGTTGCAGGATTCC
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Coding sequence (CDS) from alignment at C-tenellus_contig1090:10778..12676+

>mRNA_C-tenellus_contig1090.4.1 ID=mRNA_C-tenellus_contig1090.4.1|Name=mRNA_C-tenellus_contig1090.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=213bp|location=Sequence derived from alignment at C-tenellus_contig1090:10778..12676+ (Choristocarpus tenellus KU2346)
ATGCCATTGAGTCTATGCGAATACACAGCACATCCGTCCATTCCCCCCCA
ACAACATAGAACTCTCAGCAAGCAGACCCTGGTACCCATAGACCCGCCAC
CGCTAGAGCTCCATCGGCTTGCGAATCGACGTACTCCCCAGCCATCATAT
TCGCTAGTCTGCCCACATCCTCAAGCATGGCATAGTCGAGAGACTATATT
TTCAGCATGTTAA
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