mRNA_C-tenellus_contig1090.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1090.2.1
Unique NamemRNA_C-tenellus_contig1090.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1090.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1090contigC-tenellus_contig1090:6519..13732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size3761
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_003810.1
Cds size678
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1090.2.1prot_C-tenellus_contig1090.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1090 6519..8634 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.1011462-CDS-C-tenellus_contig1090:6518..65991680789154.1011462-CDS-C-tenellus_contig1090:6518..6599Choristocarpus tenellus KU2346CDSC-tenellus_contig1090 6519..6599 -
1680789154.113456-CDS-C-tenellus_contig1090:8037..86341680789154.113456-CDS-C-tenellus_contig1090:8037..8634Choristocarpus tenellus KU2346CDSC-tenellus_contig1090 8038..8634 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789154.1254864-UTR-C-tenellus_contig1090:8634..111591680789154.1254864-UTR-C-tenellus_contig1090:8634..11159Choristocarpus tenellus KU2346UTRC-tenellus_contig1090 8635..11159 -
1680789154.134731-UTR-C-tenellus_contig1090:12543..128551680789154.134731-UTR-C-tenellus_contig1090:12543..12855Choristocarpus tenellus KU2346UTRC-tenellus_contig1090 12544..12855 -
1680789154.1435864-UTR-C-tenellus_contig1090:13307..134671680789154.1435864-UTR-C-tenellus_contig1090:13307..13467Choristocarpus tenellus KU2346UTRC-tenellus_contig1090 13308..13467 -
1680789154.1521592-UTR-C-tenellus_contig1090:13648..137321680789154.1521592-UTR-C-tenellus_contig1090:13648..13732Choristocarpus tenellus KU2346UTRC-tenellus_contig1090 13649..13732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1090.2.1

>prot_C-tenellus_contig1090.2.1 ID=prot_C-tenellus_contig1090.2.1|Name=mRNA_C-tenellus_contig1090.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=226bp
MPVCMVSFPPITAPTPLSKNCQHTTVWMVKALAMYSQTQEVKALVSASAR
LLSTTRFRPARRQAAVIVYNLCRNPDLVELLLMNPTCASSPERSFIVEDK
VVTLTPEDKTGHRKGGEPCAADVAMLEQRQGQGENVVVTLVRLGLNDGAK
KAAKEEIQGDDKGFDGAEENKQGGEEIGTRRMCMGALSLLARDTRASKRP
DFMHLWEMVKSYTAGVEGEDRNFQFH
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mRNA from alignment at C-tenellus_contig1090:6519..13732-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1090.2.1 ID=mRNA_C-tenellus_contig1090.2.1|Name=mRNA_C-tenellus_contig1090.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=7214bp|location=Sequence derived from alignment at C-tenellus_contig1090:6519..13732- (Choristocarpus tenellus KU2346)
AGCTGTCTGGTGGAGATGCAGAATACAGAAGGGGATCGTTTGTTCTTCTC
TGCGGTATACCTAGAGATTCTTGCGGCATTCAAGGTAGAAAATACATATT
TTTTTCAAGTTGAAAAGCTACATATGTCAATATCAATGGTTTGAATTCTG
ATGATACTCAAGGGTTCATTGTAGTCAGCAGAGGGGAGTGAACTAGTGTA
TGTAGCATTAGAATAATCTCCGTGCAAGCAATGTAACATACACATCCATC
GCCTCACCAATCCAGCCTCATGGTGAAGTCGGATCTTTTGCAAGGGCTAA
GAAGAACAAGTATATAATTTGGACGGCAACACCATGTTCTACCCACAACT
CTTGTTGAGGCACCCTAGACAGCAAGAGGAATGGTATATTTCTACCTACG
AACAGCAAAGCACTTGTATATTAAAGTAAGATCCTTGGGTGTTGAAAGTG
TGCGCAACTATCACTCCTGAAAATGTCGTTTTTGGGTGGAAGTAGGCCTT
GTGTGAGGCAAAGAACGTTGTATGTGACATCTATTTGTCACTACAGAGAC
TCACTGCAATCTTCTCCTGCAATAGGTCTGTTTTGGTTTATTGTGTTCTT
TACATAGATGCATACATGTCTTTTGACCTCGTTGATGCCTGTACTGCAAT
ATCTGTTTGTACATCTGCGGCTACTGTTGGCATAGGAGTTGCATCTTGGC
TCCTTACCTGTACAGATCTCCTGTCACACTCTCATCCAAATTAGTTGGAG
TACTTATTTTTCCCGTGAGGTTATGGATTGCTCACTATACTACTCATTTG
TGTAGCAATGTAGGCTTTTCTATCCCAACTGCTGTATGACCCAAGGAATA
CATACGTACTCATGACCACAACATAAGGACAAGGAAGGCATGGATGTCCT
TGGAACCTGCAGCTACAACTATGACTCTCAGGATAAAAAACTGAGACTGG
AGACGATCCCAACGCCCAGAGGGGTCCGAAGATCGATCACACCCATATCC
CAGCCCAAGGAAGGGGGAGCATGTGCTACCTCCATGGAGGAAGCTAACTT
TTCCAGGGAATCCTGCAACCATATGACTGCATTGCCTTCTGAGGGGGCTG
TGAGGGGAACCTTCGAGCAGGTGATGGCTGGAAACAACTGCACTGGACAA
AAACATGTGGAGGGAGGTCAGGTGGAAATTGATAGTAAGGTAAGAAGCAG
TGGGTGAATGGGGGGTAGTAGGGGAGGTAAAGAGACTGGAGGGAAGGTGC
TGGATGGCCAAGGGACATTTTATTGTTCAGTTTTGTGGATCTGGACCTCT
GTACCTCTCGCTCAATTCACATTGTGGTGATCCATGCTGGTATTGAGTAC
ATTGTGCAGCGTGCTTGCTCCTCATAAGTCTTGTGTGTGCTAGGATTTTG
AGCCCACAAAGTAGGGTCGGTGTCTGATTATGCATCTGCAAAGTTTCTGA
TAGGGATTTAGGACAACAAAAAGTCTTGATTGAGAACAAAATTTGCGTTG
TAAGCCGTGTGTCTGGAATTGCACCCAATTGGAACGAAAAATTAGACAAT
TGAAAAAATTAATCCCACAATGTTGGTCCTCACCCTAATGCACCATTTCC
CCTGTCACCTAACTCAACCACTGGATGGTGGAGGCAAAGCCAAAGAATGT
AAATATCCACATCTCAATTTTCATACATGACCGCCAGTTGGGACTATCGC
CCCCTCAAGGTGCCCATCTCCTCCCAAACGTTGAAAGATAATGGAATCTT
GGTAACATTGTACGCCCAAGTAGCTGCCCTAATAATTGTGCACGTCATTC
ACTAAACAAATGCAAAGTAGAAGCAAGTTTTGTATCACCCACTGCATCAG
TCCATAGGCAAGCACTAATATTAGTCACATTACATATTCGAATTGGAGTA
CAATTTCTGACTGATTAAACTAGACCTCACAGTAAAAACAAACTGCTCCC
ATGGATTTATTCTAGCATTTGTTCTTTGTTTGTTATGATACATTTTGATG
TACTTGATTGGCCTATGTTAAATGGATGAGAGTTGACTGTAGTACATTGT
GTGATTGAAGACCAGAAGTGTCATTTTGTACTTCATCTGGCGAAGTTGTA
TTTTGTACAGACAAAATGGGTTGTATGGTTGTGGACCGTGTAGGGGATTA
TTGTGGCGATGTTGATCAGGTAATGATAGAACTCTGTTCTTGAGAAGAAA
ATCACAACTACGTAAATCGTGCTCACCGAGATGGTCATCTTCTCTGTGAA
CAAACGAAATTAAGAGTGGGGATATCTATTTCTGGCACAAGAGTCTGGGA
ACTCCTCAACAAACACCAGATTGTGCTTTATAGTGCTTGGTTCCCCTCTA
TGATGTTTGATTATCAGAACCCTGAGAACCTCATTCATGATGTAATTAGT
TATCTGTAGTTAGTGAGATGGTATGTCCCGAATCAAGAGATAGTCTGGTA
ACAAACAGCTGTTGTCGTGTATGATTTGTAATGTGTGTCCGACTGACATA
CATCCTCATCAGTTGTCCTCTTCCTCCGCTTGTACACACCTGGACAATTT
CACTTAACATGCTGAAAATATAGTCTCTCGACTATGCCATGCTTGAGGAT
GTGGGCAGACTAGCGAATATGATGGCTGGGGAGTACGTCGATTCGCAAGC
CGATGGAGCTCTAGCGGTGGCGGGTCTGACAAGCAGTGGTGGGTGTTGGG
GTATGGGAAGGGCAGAGCGACAAAGACGAAAGTTGACTACGATTGCTAAG
AATCTGGGGTATTATTGGTGGAAGATAATTTGACAGGTATCGTAGCCAAG
GAAGACATTGCGTATATATGTTCCGTTGAGTACGAAAGGATTATGCTATT
TTGGATAACATTACCTATGGGTACCAGGGTCTGCTTGCTGAGAGTTCTAT
GTTGTTGGGGGGGAATGGACGGATGTGCTGTGTATTCGCATAGACTCAAT
GGCATGAAGGGGAGCTGAGTCGATTTCCTAACAAAGCAGAAGTTGTATTG
GATATTGGAACATTGGTTTATCTGCAACATGTGAGACATAATTCCTAGCA
ATCGGCTTGTGAAAAGTAGCACAATTTATCGCTTTGCTGATTTCAGAAAA
ATCCAGAGGATATCGTTTGCAGTATATTTTCTTTAAACCACCTACAAGGA
AATGTTTCCCTATAATTTAATCTGTAGTTGTCCCATAACAGATTTTATCC
ATTACATTTTTTGTCCATATATATAGCGCCGGATTACATTTGCTAATCAA
TGTTTATTATTCATTATTGGTTAGTTCAAGGCTCTTATAGCGTCCGTTAT
CAGGGCAACATTCAGCCCCCTTTGCGCTATAAAGTCCGTTGTCCAGAAGA
ACAATTTTGGGGTCGTTTTCTCTCTCTCATGTCCGTTGTGTAGGATAGCA
CCCATTCGGGGAAATTTCCTCTATAGCATCCGAAGCTCACCAAGTGGTTG
AGCCCGTTTGTTTTAACGTGTGTTTATTGTCGATAAAACACTTAGACCTA
TTATCTCTACAACATTCGTTATATAATTATGACATTCTGGGATAACACCT
TGATAAGCTCTGCACAACGTATAGTGTTTAGATCAGAGTACGACATTTGA
ATTCTATGTGACAACCTTTTCAGACAGATCAAAGAACTCTGGTGCACACT
ATGCTCCTTTGGGTGCTAAAATGCCCAGGAGTTCTAGTGACAACATGCTG
GGAATCGACCCAGTATACTTCTAACAATAGTAGTATATACTAGTGCATAA
TATTTGTATGTTTATTATACAGACGTAGCTTGACTATTGTCGAGAGTCTG
TCCTATACAGCGCTCACTGTCAGGAGCCGCCTGTGTATGATGACTATGGA
CGAAGTAAAGACTCTTTGTATGCTCCACAACCAGCACTGTATAGAAAAGC
CACGAGAAGGGAGATATCTCCCGAATTGACAAGGCATTGACAAGCTATGA
GAAGGGAGTGATAAAGAAGCGGATGTTCCCAAGACTTGTGTATGTAAATG
CCTTGATTAATTCCTTAATGGGTTGAACAGGTGTAGATGAAGGAAGGAAG
GAGAAAGCAGGAGTGAGCTTTCAAGCCCAAAGGGGGGGGGTCCACCAATC
AATCCTATTCTATGGATCACCAATCACTAGTTTAAAGATTACTTGCTACA
ATGTTTCCTATTCCTGAACTCTTCCATATTCTAGTTCTTTTAAACCCAAA
CTTATCTTCTATTCTTCAGAACACGAACATGGTCTCTTCCTTCCTTAGAT
TGTTTCTTACAGAATCTACTTTTACTCACGAATAATAGCATATTCTTGAC
AGGGAGATAGATACGTGTAGATTAAAAAAATAACACTGCTATGGAGTGCA
TATTACGAGGTTGTAGCTATACTGGATATTGCTGCGCAAAATCAACTAGT
GGGATTTTGTGTCCATGAAAACATTTCAGAGACAGAGTCATGTCAACAAG
ATGCACTGAGGCTTAGGCTATAAATTTTGTAGTATGACGGTGTGCAGAAT
TGTGTGTAAAGTCGTTATTTGCATTGTGTTGCACAAGGAAGTCAATGTGT
GCGTGCTTGCAAGGGAAATTTATTATCAGTACCTCGTGCACAATTAGGTA
TTACTAACGATTTGTGGTGATTATCTGTTGTAGTCAATATGCAAAAGAAC
TACTGTATGTGTAGTGGCCGTATGTCCCAAGATACAGCTGAACTGTGTTT
TGTTGCGAGAGGGGAAATGGCATTCCTTCTACATGGCAAGCGAGGTTGTA
GTGTTACCCTTAGGGTAATGGGACTTCTATATCTCCTACTTCTATCATCT
CCTTAGAGTGAATGCCAGCGACAGTGGGGAAGATCTGATAGAAACGGGTA
ATTGTTATCTGTAGACCTATATTTTGCGGAAGTTACTGGCAAGTAAAAAA
TACCCCAGAGTACTTCTCAACTAAATATATACTTAACCCAACTTACTCTA
GATCTGTTAGAAAACGTGTAATTGTTTTCTGTAGAACTATATTTTGGAGA
AGATCAAGAGGAAAATATTTCAATTAGATATATACTTGGCCCATTTACTC
TAATTCAATACCATCCTTCCCCGAATCCCACCTTTCCCTTAACTGTACAT
GCCTGTGTGCATGGTATCTTTTCCTCCCATCACTGCCCCCACTCCACTCT
CTAAAAATTGCCAACATACAACAGTCTGGATGGTCAAGGCCCTTGCAATG
TACTCTCAGACCCAGGAAGTCAAGGCCCTAGTGTCCGCCTCAGCTAGACT
TCTCAGCACAACACGCTTCCGTCCTGCAAGGAGACAAGCTGCTGTGATTG
TGTACAACCTTTGCAGAAACCCAGATCTCGTCGAACTCCTCCTGATGAAT
CCTACCTGTGCATCTTCCCCAGAGAGGAGTTTCATTGTTGAAGATAAGGT
AGTGACACTTACCCCTGAAGATAAGACTGGGCATAGAAAAGGTGGTGAGC
CTTGTGCTGCTGATGTTGCTATGCTCGAGCAAAGGCAAGGACAGGGGGAA
AATGTGGTGGTGACGCTAGTACGACTAGGACTGAATGATGGTGCAAAGAA
AGCTGCAAAGGAGGAGATACAAGGAGACGACAAGGGGTTTGATGGGGCGG
AGGAAAATAAACAAGGTGGAGAAGAGATTGGAACAAGAAGAATGTGCATG
GGGGCGCTTTCTCTCCTTGCAAGGGACACCAGGGCGAGCAAGAGGGTGAG
ATTACTTATGCTGTTCACAATGGCAGAAGATGTCCATTCCGTGTATAGAA
AGGATGGTAATTGCTCTCTTTGGCTATTACTCGTTTTTCTGTTCAACATT
GCCGAAATGTGTCCTGGAATGAACATGTTTCGATACAGGTCCATTAGTAT
TCTGCTGTAGTATTTGTAAAGGCAACAGCCTGTATGAAAAAGCCTAACGA
ATGACTGAAATGCCTAGTTCTTGCCATATTTTGCCTACGCTCATGCAATA
ATTGACGCCATTTCAATGAAAGCGCTCTTCAAATAGTACAAGATCGAGAG
GTGCACTGAAGATGAACAGAATTCGATTTATGCAGCCATTGGGTGGTGTA
TATGTTGCATTAAGTCCGTAGAAGGCATTTCCCCTGCAACACCTCCTGCT
TCCTACATCCTGGTATATCACCCTGTTGCATGTTTATACCTCTTGACATT
GGTGTCAGTCCTTCAGTTTGGATTGGGGGATGTGAACAACAGTGGCGCTT
AGGTCAGTATAATATGTGTTCTTTCCTTTAGGATTGGCTGTAATTCTACA
TTTTGTACCTAATTGTCCATGAGTATATATTTGAAATGGTGCTGGCAATA
CTGTTTTGCATCATTCAAATGTTAGTGTCACCCTCTTTCTCCACAGAGAG
CTTAGAATACTCTGGCTTGATCCTCTACCGATAACAGAGTAGTACATAGT
ATGAGTAGGTGTGGGACGTTTTCTACCCAACATGGGCACTTCCCATGCTA
TAATGTACTCCGGAGTATTAAGTTTTAGCATTGGCTCATGTGCCCCCTAT
TCTAGGAGCAAAGTATGGTACAATGGTTCGCTCACTTTGAATGGACTCAA
TCACTTTGATGCTTCGTTTCCCCTTTGTCCCTCTTCCTCGCCCATCACTA
AATCGAGTTTTTACTCCTTATATTGGATGCCGCTATATCCACACTCACAC
TTCTCAAGGGTATTTATTATCGAATGTCCACATCAAACACTTGGACGTTC
TGATAGTAACTCTTTGAAACAAATGCTTTTTTCTAAAACCATGATCAACA
TGGATATATTTTGTTGAAAAATCTAGGAGAATTTCCGAATGCTGGATATT
TTGAAAGTGTGGATCCCAAAACTTTGTTTTGTGTAGCAGCTGAAGATAGC
AAGTGGTGACGAGATCACATGGGCACCAGGTTGTCAGTAGTATGTAGAAG
TAGGTGGGCCTTCCGCAAGTAAGTGATAGCAGAGTACTACAGACTAGAGA
AGATAGTACTGTTAGGGAAACTGCTCCCTCTCAACTACCACTCCTTTCAA
CTCACCAATAAGATCCCTCGCTGCCCCACCCTTGTATTCCTTCCCACCCT
CTGGAACTCCCCCCCTTCCTATCTTTGTTTCGCCCGTCCTAATATGTTTC
ACATGCAACTTCTGGAAACTCGTCAACAAAAAGCCCGATTTCATGCACCT
TTGGGAGATGGTGAAGTCATACACTGCCGGGGTAGAAGGGGAAGATCGGA
ATTTTCAATTTCAC
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Coding sequence (CDS) from alignment at C-tenellus_contig1090:6519..13732-

>mRNA_C-tenellus_contig1090.2.1 ID=mRNA_C-tenellus_contig1090.2.1|Name=mRNA_C-tenellus_contig1090.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=678bp|location=Sequence derived from alignment at C-tenellus_contig1090:6519..13732- (Choristocarpus tenellus KU2346)
ATGCCTGTGTGCATGGTATCTTTTCCTCCCATCACTGCCCCCACTCCACT
CTCTAAAAATTGCCAACATACAACAGTCTGGATGGTCAAGGCCCTTGCAA
TGTACTCTCAGACCCAGGAAGTCAAGGCCCTAGTGTCCGCCTCAGCTAGA
CTTCTCAGCACAACACGCTTCCGTCCTGCAAGGAGACAAGCTGCTGTGAT
TGTGTACAACCTTTGCAGAAACCCAGATCTCGTCGAACTCCTCCTGATGA
ATCCTACCTGTGCATCTTCCCCAGAGAGGAGTTTCATTGTTGAAGATAAG
GTAGTGACACTTACCCCTGAAGATAAGACTGGGCATAGAAAAGGTGGTGA
GCCTTGTGCTGCTGATGTTGCTATGCTCGAGCAAAGGCAAGGACAGGGGG
AAAATGTGGTGGTGACGCTAGTACGACTAGGACTGAATGATGGTGCAAAG
AAAGCTGCAAAGGAGGAGATACAAGGAGACGACAAGGGGTTTGATGGGGC
GGAGGAAAATAAACAAGGTGGAGAAGAGATTGGAACAAGAAGAATGTGCA
TGGGGGCGCTTTCTCTCCTTGCAAGGGACACCAGGGCGAGCAAGAGGCCC
GATTTCATGCACCTTTGGGAGATGGTGAAGTCATACACTGCCGGGGTAGA
AGGGGAAGATCGGAATTTTCAATTTCAC
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