mRNA_C-tenellus_contig10896.1.1 (mRNA) Choristocarpus tenellus KU2346
|
Overview
Homology
BLAST of mRNA_C-tenellus_contig10896.1.1 vs. uniprot
Match: D7FNH5_ECTSI (Arf-GAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH5_ECTSI) HSP 1 Score: 318 bits (816), Expect = 3.460e-104 Identity = 168/256 (65.62%), Postives = 193/256 (75.39%), Query Frame = 1
Query: 1 MSHAMDPAIQRDIRAMPGNTHCVDCGSPNPQWASVSYGCVFCLECSGQHRGLGVHVSFVRSITMDSWSDKQIKMMRSGGNQKLIDWFEKHGIPKRQVISKKYNSPEAELFRERLLASVEGRPLPTELPKRQPSPPLSGGV-----------------TVDAQSMERLPGETDGEYVSRQRALRGQASTRMHNKFG-SGRMEGLGSDSSYNPQSGGYGGMASG-----GDELTGQMGLLGQKSMKFLSSSFAQLQTG 699
MSHAMD IQR+IRA+PGNT CVDCG NPQWASVSYGCVFCLECSGQHRGLGVH+SFVRSITMDSWS+KQI MMR+GGNQKLIDWF+ HG+ Q I+KKY+SP AELFR+RLLA+VEGRPLPTELP+R + D + MERL GETD EYV+RQ ALRG+AS RM +KFG S RM+GLGSDSSY+P SGGYGG D++ GQ+G++GQKSM+FLS SFA LQTG
Sbjct: 1 MSHAMDAGIQREIRALPGNTRCVDCGVANPQWASVSYGCVFCLECSGQHRGLGVHISFVRSITMDSWSEKQINMMRAGGNQKLIDWFQSHGVTSDQRIAKKYHSPAAELFRDRLLATVEGRPLPTELPQRPXXXXXXXXXXXXXXXXXXXXXXXXXXSTDQRGMERLAGETDSEYVARQTALRGEASARMRDKFGGSNRMQGLGSDSSYDPASGGYGGXXXXXXXMTADDIGGQIGVMGQKSMRFLSESFATLQTG 256
BLAST of mRNA_C-tenellus_contig10896.1.1 vs. uniprot
Match: A0A835Z255_9STRA (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z255_9STRA) HSP 1 Score: 273 bits (699), Expect = 1.460e-88 Identity = 146/259 (56.37%), Postives = 176/259 (67.95%), Query Frame = 1
Query: 13 MDPAIQRDIRAMPGNTHCVDCGSPNPQWASVSYGCVFCLECSGQHRGLGVHVSFVRSITMDSWSDKQIKMMRSGGNQKLIDWFEKHGIPKRQVISKKYNSPEAELFRERLLASVEGRPLPTELPKRQPSPPLSGGV-------------TVDAQSMERLPGETDGEYVSRQRALRGQASTRMHNKFGSG---------------RMEGLGSDSSYNPQSGGYGGMASGGDELTGQMGLLGQKSMKFLSSSFAQLQTGMQ 705
MD AIQ++IRAMPGN CVDCG P+PQWASVSYGC+FCLECSGQHRGLGVHVSFVRSITMDSW+DKQIKMMR GGN KL++WF++ GI + I+ KYNSPEAELF+ERLLA+VEGRPLPTELPKR+PSPP D + MERL GE+D +Y++RQR LR +A+ RM NKFG+G M G+GSD +YNP G D +G K + F++SS + L TG+Q
Sbjct: 1 MDLAIQKEIRAMPGNKSCVDCGVPHPQWASVSYGCLFCLECSGQHRGLGVHVSFVRSITMDSWTDKQIKMMREGGNAKLLEWFDQRGIGRADPINTKYNSPEAELFKERLLAAVEGRPLPTELPKREPSPPRQASYGNSGFRSSGXXXXXXDPRGMERLAGESDKQYIARQRVLRDEAAARMRNKFGAGGFXXXXXXXXXXXXXXMAGIGSDPNYNPSRGXXXXXXXXXD--------IGSKGISFITSSLSSLTTGVQ 251
BLAST of mRNA_C-tenellus_contig10896.1.1 vs. uniprot
Match: A0A7S2R4M4_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4M4_9STRA) HSP 1 Score: 246 bits (627), Expect = 2.390e-76 Identity = 126/215 (58.60%), Postives = 153/215 (71.16%), Query Frame = 1
Query: 1 MSHAMDPAIQRDIRAMPGNTHCVDCGSPNPQWASVSYGCVFCLECSGQHRGLGVHVSFVRSITMDSWSDKQIKMMRSGGNQKLIDWFEKHGIPKRQVISKKYNSPEAELFRERLLASVEGRPLPTELPKRQPSPPLSGGVTVDAQSMERLPGETDGEYVSRQRALRGQASTRMHNKFGSGRMEGLGSDSSYNPQSGGYGGMASGGDELTGQMGLL 645
M+ M P + R+IRAMPGN CVDC +PNPQWASV++G + CLECSGQHRGLGVHVSFVRSITMDSWSDKQI MM+ GGN+KL DWF++ GIP IS KYN P+++ F ERL A VEGR P +P +Q P + D ERL GE+D EY++RQ LR +A+ RM KFG G M+GLGSD+SYN SGGYGG +G + G +G L
Sbjct: 27 MALQMPPDLVREIRAMPGNNACVDCLAPNPQWASVTFGTLICLECSGQHRGLGVHVSFVRSITMDSWSDKQIAMMKCGGNKKLRDWFDERGIPHEMRISSKYNLPDSKYFSERLKAQVEGRE-PPPMPAKQAIPVAAAQSRGDPNGKERLQGESDAEYIARQTRLRDEAAARMRQKFGGGGMQGLGSDASYNASSGGYGGADAGXXXVVGTLGSL 240
BLAST of mRNA_C-tenellus_contig10896.1.1 vs. uniprot
Match: A0A7S2V5A2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5A2_9STRA) HSP 1 Score: 237 bits (605), Expect = 7.600e-74 Identity = 132/243 (54.32%), Postives = 170/243 (69.96%), Query Frame = 1
Query: 1 MSHAMDPAIQRDIRAMPGNTHCVDCGSPNPQWASVSYGCVFCLECSGQHRGLGVHVSFVRSITMDSWSDKQIKMMRSGGNQKLIDWFEKHGIPKRQVISKKYNSPEAELFRERLLASVEGRPLPTELPKRQPSPP---LSGGVTVDAQSMERLPGETDGEYVSRQRALRGQASTRMHNKFGS--GRMEGLGSDSSYNPQSGGYGGMASGGDELT--GQ-MGLLGQKSMKFLSSSFAQLQTGMQ 705
M+HAMD +++R +PGNT CVDC +P+PQWASV+YG CL+CSGQHR LGVH+SFVRS+TMDSWSDKQI+MM+ GGN KL DWF +H I ++ K Y+ P AEL+++RLLA VEGRPLPT++P R PS SG V +ERLPGE+D +Y+ RQ+ALR QA R+ KFG+ GRM+G+GSD Y P S G A+G EL GQ + LG K+M L+S + L +G+Q
Sbjct: 1 MAHAMDSNAAKELRQIPGNTTCVDCKAPHPQWASVTYGSFICLDCSGQHRSLGVHMSFVRSVTMDSWSDKQIRMMQCGGNDKLRDWFRQHNIDSLALVPK-YHEPAAELYKDRLLAEVEGRPLPTQMPARAPSSTGSASSGAGPVVGGGLERLPGESDEQYIDRQKALREQAKARLQAKFGANGGRMQGIGSDPGYRPPSE-SGPSATGVPELDALGQNLSDLGGKTMGALTSGWGALSSGVQ 241
BLAST of mRNA_C-tenellus_contig10896.1.1 vs. uniprot
Match: F0Y3J3_AURAN (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3J3_AURAN) HSP 1 Score: 218 bits (556), Expect = 4.720e-68 Identity = 105/208 (50.48%), Postives = 149/208 (71.63%), Query Frame = 1
Query: 1 MSHAMDPAIQRDIRAMPGNTHCVDCGSPNPQWASVSYGCVFCLECSGQHRGLGVHVSFVRSITMDSWSDKQIKMMRSGGNQKLIDWFEKHGIPKRQVISKKYNSPEAELFRERLLASVEGRPLPTELPKRQPSP------PLSGGVTV------DAQSMERLPGETDGEYVSRQRALRGQASTRMHNKFGSGRMEGLGSDSSYNPQSG 588
M+ +M PA+Q +I+ +PGN CVDCG P+PQWASV++G + CLECSG HRG+GVH+SFVRS+TMDSW++KQ+ +M+ GGN LI +++KHG+ R + KY+ P +EL+++RL A VEG+PLPT+LP+R+ +P P G ++ D + E L GET+ +YV+RQR L+ +A RM KFG G M G+GS+S YNP +G
Sbjct: 1 MAMSMTPAMQAEIKILPGNDRCVDCGGPHPQWASVTFGALMCLECSGAHRGMGVHISFVRSVTMDSWNEKQLALMKGGGNADLIAFWKKHGVDPRMPHNAKYHEPASELYKDRLRAKVEGKPLPTQLPQRKAAPASCYDAPGGGSMSAGGFGGGDTKGAEALKGETEDQYVARQRRLQAEARERMRAKFGGGGMGGVGSNSDYNPATG 208
BLAST of mRNA_C-tenellus_contig10896.1.1 vs. uniprot
Match: A0A6V1NUA9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NUA9_HETAK) HSP 1 Score: 221 bits (563), Expect = 3.310e-66 Identity = 110/201 (54.73%), Postives = 139/201 (69.15%), Query Frame = 1
Query: 1 MSHAMDPAIQRDIRAMPGNTHCVDCGSPNPQWASVSYGCVFCLECSGQHRGLGVHVSFVRSITMDSWSDKQIKMMRSGGNQKLIDWFEKHGIPKRQVISKKYNSPEAELFRERLLASVEGRPLPTELPKR----QPSPPLSGG-------------VTVDAQSMERLPGETDGEYVSRQRALRGQASTRMHNKFGSGRMEG 552
M+HAMDPA+ ++R +PGNT CVDCGSP+PQWASV+YG FCLECSGQHRGLGVH+SFVRS+TMDSW+DKQI MMR+GGN K +W G+ I KYN+PEAEL++ERL A+VEGRPLP LP+R QP P + G +ERLPGE++ EY++RQ L+ +A+ R+ KFG G + G
Sbjct: 1 MAHAMDPAVANELRQLPGNTSCVDCGSPHPQWASVTYGSFFCLECSGQHRGLGVHLSFVRSVTMDSWTDKQIDMMRAGGNTKFREWMTSKGVDNNMHIRAKYNTPEAELYKERLRATVEGRPLPETLPERAAPIQPPPHSAPGRMGHGGXXXXXXXXEAPRSHLERLPGESEEEYMARQLRLKDEAAARLRAKFGPGGLGG 201
BLAST of mRNA_C-tenellus_contig10896.1.1 vs. uniprot
Match: A0A7S2BCF2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BCF2_9STRA) HSP 1 Score: 213 bits (541), Expect = 3.110e-65 Identity = 106/198 (53.54%), Postives = 134/198 (67.68%), Query Frame = 1
Query: 1 MSHAMDPAIQRDIRAMPGNTHCVDCGSPNPQWASVSYGCVFCLECSGQHRGLGVHVSFVRSITMDSWSDKQIKMMRSGGNQKLIDWFEKHGIPKRQVISKKYNSPEAELFRERLLASVEGRPLPTELPKRQPSPPLSGGVTVDAQSMERLPGETDGEYVSRQRALRGQASTRMHNKFGSGRMEGLGSDSSYNPQSGGY 594
M+ M+P + R+IRA PGN +CVDC PNPQWASVSYG +FCLECSG+HRGLGVH+SFVRSITMDSWS+KQI+MM+ GGN+K + + G+P IS KY +P+A+ +R R A +EG+ +P +P R P D E L GE++ EY++RQ LR A RM KFG G M+GLGSDS YNP Y
Sbjct: 13 MALQMEPGLVREIRAFPGNNYCVDCQDPNPQWASVSYGTLFCLECSGKHRGLGVHISFVRSITMDSWSEKQIQMMKRGGNEKFRSFMTERGVPNNMSISAKYQTPDADYYRRRHKAVIEGKEIPA-MPPRNPIDTSVDYSRGDPNGKELLRGESEQEYIARQTILRNAAQERMKAKFGGGGMQGLGSDSGYNPGGNNY 209
BLAST of mRNA_C-tenellus_contig10896.1.1 vs. uniprot
Match: A0A7S3P2L1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P2L1_9STRA) HSP 1 Score: 217 bits (553), Expect = 6.960e-65 Identity = 122/225 (54.22%), Postives = 146/225 (64.89%), Query Frame = 1
Query: 13 MDPAIQRDIRAMPGNTHCVDCGSPNPQWASVSYGCVFCLECSGQHRGLGVHVSFVRSITMDSWSDKQIKMMRSGGNQKLIDWFEKHGIPKRQVISKKYNSPEAELFRERLLASVEGRPLPTELPKRQPSPP----------LSGGVTVDAQSMERLPGETDGEYVSRQRALRGQASTRMHNKFGS-------------GRMEGLGSDSSYNPQSGGYGGMASGGD 618
M A Q ++A+PGNT C DCG +PQWASVS+G VFCLECSG HR LGVH+SFVRSI MDSW+DKQ+ +M++GGN K D+ +KHGI R I +KY S A+L++E L A VEGRP PTELPK P P SGG D MERL GETD +Y++RQ LR +A RM +KFG GRM+G+GSD SYNP GGYGG GGD
Sbjct: 4 MTAADQAVVKALPGNTICCDCGMKSPQWASVSFGNVFCLECSGVHRSLGVHISFVRSIAMDSWTDKQLALMKNGGNNKCNDYLKKHGIDARTPIKQKYESSAAQLYKEVLKARVEGRPEPTELPKPAPKPASSFGSTGSLGASGGGGGDPNGMERLAGETDQQYIARQTRLREEARARMASKFGGSGMGXXXXXXXXXGRMQGIGSDPSYNPN-GGYGG---GGD 224
BLAST of mRNA_C-tenellus_contig10896.1.1 vs. uniprot
Match: A0A6G0WK74_9STRA (Arf-GAP domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WK74_9STRA) HSP 1 Score: 211 bits (536), Expect = 3.180e-63 Identity = 109/203 (53.69%), Postives = 140/203 (68.97%), Query Frame = 1
Query: 1 MSHAMDPAIQRDIRAMPGNTHCVDCGSPNPQWASVSYGCVFCLECSGQHRGLGVHVSFVRSITMDSWSDKQIKMMRSGGNQKLIDWFEKHGIPKRQVISKKYNSPEAELFRERLLASVEGRPLPTELPKRQPSPPLSGGVTV---DAQSMERLPGETDGEYVSRQRALRGQASTRMHNKFGSGRMEGLGSDSSYNPQSGGYGG 600
M+H MD ++Q+++R +PGN CVDC +P PQWA+VSYG CLECSG+HRGLGVH+SFVRS++MDSW+DKQI++M+ GGN FEK G+PK I++KYN+P+AE FR RL A VEG P LP+ PS S G D +E L GET+ EYV+RQ LR +A RM KFGSG M+G+GS + + QS GG
Sbjct: 1 MAHQMDLSVQQELRKLPGNNKCVDCDAPYPQWATVSYGTFMCLECSGRHRGLGVHISFVRSVSMDSWTDKQIRLMQLGGNDHFRSEFEKAGVPKNLSIAQKYNTPQAEAFRNRLNALVEGT-TPVPLPRWDPSSAPSTGAAASSGDTNGVEALKGETEAEYVARQTRLREEARARMAAKFGSGGMQGIGSGGAVSSQSSSGGG 202
BLAST of mRNA_C-tenellus_contig10896.1.1 vs. uniprot
Match: A0A8J2SUG8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SUG8_9STRA) HSP 1 Score: 212 bits (540), Expect = 3.620e-63 Identity = 109/213 (51.17%), Postives = 148/213 (69.48%), Query Frame = 1
Query: 1 MSHAMDPAIQRDIRAMPGNTHCVDCGSPNPQWASVSYGCVFCLECSGQHRGLGVHVSFVRSITMDSWSDKQIKMMRSGGNQKLIDWFEKHGIPKRQVISKKYNSPEAELFRERLLASVEGRPLPTELPKRQPSP------PLSGGVTV------DAQSMERLPGETDGEYVSRQRALRGQASTRMHNKFGSG-RMEGLGSDSSYNPQSGGYGG 600
M+ +M PA+Q +IR +PGN CVDCGS +PQWASV+YG + CLECSG HRG+GVH+SFVRS+TMDSWSDKQ+KMM N +L+ +++KH + R + KY+ P ++L+ +RL A VEGRPLPT+LP RQ +P P G ++ D++ L GET +YV+RQR L+ +A RM KFG G M G+GS+S Y+P++G YGG
Sbjct: 1 MAVSMTPAMQAEIRILPGNDKCVDCGSNHPQWASVTYGALMCLECSGAHRGMGVHISFVRSVTMDSWSDKQLKMMTHSSNDELVAFWKKHNVDPRMPHNAKYHEPASQLYADRLKAKVEGRPLPTKLPARQAAPTSAYDAPGGGSMSAGGFGGGDSKGSAALAGETTEQYVARQRRLQAEARARMRAKFGGGGAMGGVGSNSDYDPKTGTYGG 213 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10896.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10896.1.1 >prot_C-tenellus_contig10896.1.1 ID=prot_C-tenellus_contig10896.1.1|Name=mRNA_C-tenellus_contig10896.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=235bp MSHAMDPAIQRDIRAMPGNTHCVDCGSPNPQWASVSYGCVFCLECSGQHRback to top mRNA from alignment at C-tenellus_contig10896:1484..5320+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10896.1.1 ID=mRNA_C-tenellus_contig10896.1.1|Name=mRNA_C-tenellus_contig10896.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3837bp|location=Sequence derived from alignment at C-tenellus_contig10896:1484..5320+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10896:1484..5320+ >mRNA_C-tenellus_contig10896.1.1 ID=mRNA_C-tenellus_contig10896.1.1|Name=mRNA_C-tenellus_contig10896.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=705bp|location=Sequence derived from alignment at C-tenellus_contig10896:1484..5320+ (Choristocarpus tenellus KU2346)back to top |