mRNA_C-tenellus_contig10892.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10892.1.2
Unique NamemRNA_C-tenellus_contig10892.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10892.1.2 vs. uniprot
Match: A0A6H5LGK6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LGK6_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 6.390e-67
Identity = 306/979 (31.26%), Postives = 401/979 (40.96%), Query Frame = 1
Query:   28 SRSVGVISIPVPARPLLQHLVGRGKHQQQKVGGSKTSGRTGGLERVTTRGAGSRQMAQSMLRVRRGFGAADLMVGETALLEEMVCAVHVSDACVQRWMDASVEFLLVDGKSKGAGAKGGEGQKGLQGREIRSGSQRLVTQDEGWGLDRKQGPLGLGHHRGSEAPTVDPGDQVVGVARLQLRDVILSPELGVVSTLDLTEVLDFWDVEDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVSRGSVGGESASGDHDRPLILGDRAIGALTVSLELVPAEGDSWTPNTSAATEDEHYSVPAVVEVLRDCGGRNQRGLGQHATIENRQEPGEVSQHVGFETRPVGTATGTGGMIPTLDSTRQFWSHQSGAEVILASVPSHDKSAGGAQVDLGGTQRHKGDASDLSVIQEVKGGVSSGDRGA-----FGSRLVDAPRAVEQGEDLMGLLREAREVMSCEVVVGLECAVITSG--------GTSLEGVKVAYSCNQ--GLVHPSDRVVQHSARGKPILQRSLPSVEGTGGAVALPSSARSFALKHQIVTPAAVTQEVLHMW-EDAIQVFEVWGLPTSCELSFETEKEGVGTAGTAPGMRSGVCSEAQGNVLLGLAKVRLSAFASFGKIMGGGTKATATTAADGPILITNPFSGLVVGELTVLLLLREAVS-SMLLSAGGEXXXXXXXXXXXTVTSHLEPLQGLKDQGLLEAGKAPKENEEVEEETCEEGW---KSKVDRHSE-EGAVTKSSSAVPLTLPAYCPSVNDSAEDLSRLLNPKRGEELDSHGQRPRSSPESEKPALGQERTSGEFLGLVRHVVELSAVGKVP--LGEGAD-----ADDPYGLTGCIVEYSLPGDQTCATSSREGHGDSDLSNRSGNVNCSSLANTGHRAHTLWWDADSAILNSRTRHAVKVKALGGSMTDLGLGSPSLSDQKGDWRGGIT-TAGDFDHGNEVHEGSGEGELGKLLDCIFGPNNITFLIY 2877
            +R+  V+S+PVP R     L G+GK       G  T+        +TT    SR  A S+LRVRRGFGA DL+VGET+LLEE+VCAV V D CV +WMD +VEFLLVDG++ GA                     RL  ++      RK+            + TV PGD+V  VA   LRD++LS +LGV +TLDL EV DFW  EDA                               R   GG  A     RPL+LGDRA+GAL + LELVP E D            EH S P V E    C    Q+G    A                      G        +P L +            V     PS D   GG   ++GG         D    +   GG + G  G       GS     P     G D  G  +EA   ++ + +      V+  G        G   E V+VAYS  Q  GL   +  V   S RG P          G GGA       + FA  HQ V PA       H+    A +VFEVWG   +   S        G++G   G         Q   LLGLAKV L  FA+     G    +  +  ADGP+ + +PF+G  VG+L +LL L  + + + L   GG+                    +G ++ G          NE+ + E  +EGW   +    R +E EG    +  A P       P+++DS  +LS LLNP R E        P++SP          R+S  F GLVRHVVELSAVG++P  LG+G       A +P G   C +EY L   Q       +G                +      + H LWWDADS ILNSR RH VKV    G + D     P+     G   GG   ++GD          +  G L  LLDC+FG  ++   ++
Sbjct:  673 ARNARVVSVPVPPRVPASTL-GKGKAAPAVRRGRSTA------PGMTTTATSSRS-ATSVLRVRRGFGACDLVVGETSLLEELVCAVDVDDTCVAQWMDTAVEFLLVDGRTDGAPRP------------------RLPAKNHNHPHLRKK----------QRSSTVGPGDRVAAVATFPLRDLVLSADLGVAATLDLIEVSDFWATEDARAAAAGRTGRGGRPLRNPY------------RSDDGGGGA-----RPLVLGDRAVGALAIVLELVPGEPD---------VSPEH-SRPEV-ERWTKCS--RQQGT---AXXXXXXXXXXXXXXXXXXXXXXGVIRTEASSLPPLPA----------GGVGTRREPSAD--GGGGACEVGG---------DACSAEAEPGGWAEGGPGGEKHEPSGSLTATMP----PGLDGHGDWKEASGAVAVDPLDTSFAVVLRIGDLTLAPPLGPGAEQVRVAYSFTQVEGL---TPTVTHRSVRGHP---------SGDGGAQ---QRFKRFAFNHQEVFPAPTESSTWHLGGAGANRVFEVWGCSATGPES--------GSSGGGLG---------QAEALLGLAKVSLRPFAACEGRTG---DSRLSVGADGPVSVVDPFTGKAVGDLHLLLALGASPTIAALAGKGGDAEAGSGAMGDPPTLGGGSNAKGGRETG----------NEKRDRELEDEGWAGLRGGPARGAEGEGGGGMAHEAEP-------PALDDSVAELSMLLNPGRVEG-------PKASPA---------RSSSGFTGLVRHVVELSAVGELPVVLGDGISVGGEGAQEPVG---CAIEYVLRSSQAGLDQDIDG--------------TDTPPTAAGQTHELWWDADSGILNSRARHTVKVP---GGILD----KPATPGSAGSAGGGAAQSSGDAGTDTVAATTTEVGSLNNLLDCMFGREDVVLSLF 1465          
BLAST of mRNA_C-tenellus_contig10892.1.2 vs. uniprot
Match: A0A835YTA2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTA2_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.060e-19
Identity = 89/245 (36.33%), Postives = 112/245 (45.71%), Query Frame = 1
Query:  124 GSKTSGRTGGLERVTTRGAGSRQMAQSMLRVRRGFGAADLMVGETALLEEMVCAVHVSDACVQRWMDASVEFLLVDGKSKGAGAKGGEGQKGLQGREIRSGSQRLVTQDEGWGLDRKQGPLGLGHHRGSEAPTVDPGDQVVGVARLQLRDVILSPELGVVSTLDLTEVLDFWDVEDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVSRGSVGGESASGDHDRPLILGDRAIGALTVSLELVPAE 858
            GS+  GR G       RG   RQ  Q MLRVRR +GAADL +GET L EE VCA+ + DA   RWMDA+++ LLVDG  KG                +                     PL                D+VVG+AR+ LR+++LSPEL V ++ D+ EV+DFW                  XXXXXX            RG        G  D  L+LG RA+GAL  +LEL+P E
Sbjct:  274 GSRPGGRVG-------RGKERRQAPQPMLRVRRSYGAADLTIGETTLYEETVCAIELDDATCCRWMDATLDVLLVDGAHKG----------------LPXXXXXXXXXXXXXXXXXXXXPLAASQ------------DRVVGLARVPLRNLLLSPELRVAASADIIEVIDFWG-------------EGGGXXXXXXRRAQQPPLHNPYRGK-------GLEDTDLMLGKRAVGALAATLELLPGE 463          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10892.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LGK6_9PHAE6.390e-6731.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YTA2_9STRA2.060e-1936.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10892contigC-tenellus_contig10892:38..5422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size2933
Hectar predicted targeting categoryother localisation
Exons4
Cds size2931
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789153.5832858-CDS-C-tenellus_contig10892:37..14951680789153.5832858-CDS-C-tenellus_contig10892:37..1495Choristocarpus tenellus KU2346CDSC-tenellus_contig10892 38..1495 +
1680789153.601044-CDS-C-tenellus_contig10892:2677..34761680789153.601044-CDS-C-tenellus_contig10892:2677..3476Choristocarpus tenellus KU2346CDSC-tenellus_contig10892 2678..3476 +
1680789153.6118946-CDS-C-tenellus_contig10892:4110..43611680789153.6118946-CDS-C-tenellus_contig10892:4110..4361Choristocarpus tenellus KU2346CDSC-tenellus_contig10892 4111..4361 +
1680789153.6222546-CDS-C-tenellus_contig10892:4999..54221680789153.6222546-CDS-C-tenellus_contig10892:4999..5422Choristocarpus tenellus KU2346CDSC-tenellus_contig10892 5000..5422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10892.1.2prot_C-tenellus_contig10892.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10892 38..5422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10892.1.2

>prot_C-tenellus_contig10892.1.2 ID=prot_C-tenellus_contig10892.1.2|Name=mRNA_C-tenellus_contig10892.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=977bp
QIWGGGKDGSRSVGVISIPVPARPLLQHLVGRGKHQQQKVGGSKTSGRTG
GLERVTTRGAGSRQMAQSMLRVRRGFGAADLMVGETALLEEMVCAVHVSD
ACVQRWMDASVEFLLVDGKSKGAGAKGGEGQKGLQGREIRSGSQRLVTQD
EGWGLDRKQGPLGLGHHRGSEAPTVDPGDQVVGVARLQLRDVILSPELGV
VSTLDLTEVLDFWDVEDARTAAGMGGREGHRGRSGRSLRNPRRRRRQVSR
GSVGGESASGDHDRPLILGDRAIGALTVSLELVPAEGDSWTPNTSAATED
EHYSVPAVVEVLRDCGGRNQRGLGQHATIENRQEPGEVSQHVGFETRPVG
TATGTGGMIPTLDSTRQFWSHQSGAEVILASVPSHDKSAGGAQVDLGGTQ
RHKGDASDLSVIQEVKGGVSSGDRGAFGSRLVDAPRAVEQGEDLMGLLRE
AREVMSCEVVVGLECAVITSGGTSLEGVKVAYSCNQGLVHPSDRVVQHSA
RGKPILQRSLPSVEGTGGAVALPSSARSFALKHQIVTPAAVTQEVLHMWE
DAIQVFEVWGLPTSCELSFETEKEGVGTAGTAPGMRSGVCSEAQGNVLLG
LAKVRLSAFASFGKIMGGGTKATATTAADGPILITNPFSGLVVGELTVLL
LLREAVSSMLLSAGGEGEGAGAGAGAGTVTSHLEPLQGLKDQGLLEAGKA
PKENEEVEEETCEEGWKSKVDRHSEEGAVTKSSSAVPLTLPAYCPSVNDS
AEDLSRLLNPKRGEELDSHGQRPRSSPESEKPALGQERTSGEFLGLVRHV
VELSAVGKVPLGEGADADDPYGLTGCIVEYSLPGDQTCATSSREGHGDSD
LSNRSGNVNCSSLANTGHRAHTLWWDADSAILNSRTRHAVKVKALGGSMT
DLGLGSPSLSDQKGDWRGGITTAGDFDHGNEVHEGSGEGELGKLLDCIFG
PNNITFLIYWSAGDGTGDGAKMGAGLH
back to top

mRNA from alignment at C-tenellus_contig10892:38..5422+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10892.1.2 ID=mRNA_C-tenellus_contig10892.1.2|Name=mRNA_C-tenellus_contig10892.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=5385bp|location=Sequence derived from alignment at C-tenellus_contig10892:38..5422+ (Choristocarpus tenellus KU2346)
CAGATCTGGGGGGGGGGAAAGGATGGCTCCAGGAGTGTGGGGGTGATATC TATTCCAGTTCCTGCAAGACCGCTGTTGCAGCACTTGGTAGGGAGGGGCA AGCACCAACAACAAAAAGTGGGGGGCTCAAAAACAAGTGGCAGGACCGGA GGGCTGGAGAGAGTGACCACCAGAGGGGCTGGGTCTCGACAGATGGCACA GTCTATGCTGCGCGTGAGGAGAGGGTTTGGGGCAGCAGATTTGATGGTTG GTGAGACAGCACTGCTGGAAGAAATGGTGTGTGCTGTTCACGTGAGCGAT GCCTGTGTGCAGCGCTGGATGGATGCGTCTGTGGAGTTTCTGCTTGTGGA TGGGAAGTCCAAGGGAGCTGGAGCTAAAGGGGGAGAGGGACAAAAGGGGC TACAGGGAAGGGAGATTCGGTCTGGGAGTCAACGTTTGGTTACCCAGGAT GAGGGATGGGGCTTGGATCGGAAACAGGGTCCTCTAGGATTAGGTCACCA CCGGGGAAGTGAGGCCCCCACCGTGGATCCTGGGGATCAGGTTGTAGGTG TGGCAAGACTGCAGCTTCGAGATGTGATTCTTTCACCTGAACTGGGAGTA GTGTCCACCCTGGACCTCACTGAGGTTTTGGACTTCTGGGACGTTGAGGA TGCTCGTACAGCTGCTGGGATGGGGGGAAGGGAAGGGCACAGAGGACGCA GTGGGCGCTCTCTTCGCAACCCTCGTAGACGCCGGAGACAGGTGTCGAGA GGATCAGTAGGGGGTGAATCAGCGTCTGGTGACCACGACCGCCCTCTAAT TCTTGGAGACAGGGCAATTGGGGCGCTGACTGTCAGCCTTGAGCTTGTCC CTGCAGAGGGTGACAGTTGGACCCCTAATACCTCAGCTGCGACAGAGGAT GAACACTATTCTGTGCCTGCTGTGGTGGAGGTGTTAAGAGATTGTGGAGG GAGGAATCAGCGAGGCTTAGGTCAGCATGCAACCATAGAGAACCGCCAGG AGCCTGGAGAGGTATCTCAACATGTTGGGTTTGAGACAAGACCGGTTGGG ACAGCCACTGGGACGGGGGGTATGATTCCTACCCTGGATTCCACACGGCA ATTTTGGTCCCATCAGTCAGGTGCTGAGGTCATCCTTGCTTCCGTGCCTA GTCATGATAAGAGTGCTGGGGGTGCACAAGTGGATTTAGGTGGAACCCAA AGACATAAAGGTGATGCCTCAGACCTTTCTGTCATACAAGAGGTCAAGGG TGGGGTGAGTTCTGGGGACAGGGGGGCGTTTGGGAGTAGGTTGGTGGATG CGCCGAGAGCAGTAGAGCAGGGAGAGGATTTGATGGGATTGTTGAGGGAG GCAAGGGAGGTAATGTCATGCGAGGTGGTGGTGGGGTTGGAGTGTGCTGT TATAACTTCTGGAGGGACTTCGCTTGAGGGCGTGAAGGTGGCCTACTCTT GCAACCAGGTATGTAGAAGGAGAGTTACGATAGCAACATTGACATCCTAC GTGGGGATGGATTGTTTTCTTTGTTATTATTATTTTTCATGACATGAGAG AGGATTGGGGGAAGTACGCACCCTTGCTTTACTCTTGCTTTCAGATGCAA GTTGAATCATTGCATCCGAGCACTTGGCTTCTCAATGCTAAATGGCCACT TCCTCTTTCTATTCTTCTTCTTAGTGTTATGGACTATATATATTGCTCTG GTGGGTGGGGGTCATAGCAATGAAATGGGAAGTGTCCAGTTGATGTGCAC AGGGGTGGCATTGTTTATTGTCAAGTCTAACATGTCACATCACCACCACC ACTGTTGCCATTCCCCTCACCCTCACCCTCTTGCCCTTGCTCCCTTGCCT TGTCCTTTGAACCATTTTACCTTGGTGGCAGGGCTAATCTTGTACACTCC TTTTGCCATATATGTGTTGCTCAAATATCTTAATGTACCCTACCACCCTC TCTATTCCTACCTTTTGCCTCCATCACTCTTTGTCCATAAGTTAGAACCG TCACAATGCCTTCCTTCAACCATAAGGAAATTGCTTTGTAATCTGGAATT TGCATCCCTCCTCTCTCCAGCAGGCTGCATACTCTGTCTGCATTTGGTAT GTGTATTGCTTTCTATCAGGAATAGCAAGCTACAATTGTTTCACTGTCAC TCATTCTGAAAAATCTAATGCACTCCCCCCTTCCCCCCCCCCACAAACTT CAACCTCCATGCCCTGCTAGTCCCCTGCTCTGGGGTGTAGCCCTGGAGCG GGTAATGAAGTACCTCTGATGAGACAATCACATGAGCCCATAAAACAATG CGACTGCTTAGGTTGCTCAGTTTGAACTGGTTGATACAAGGACAAGTTTG AGCGAGCACATTTTGCTTGAGTAGAGGTTCCCCAAACTGCAAACACAAGA TGACAACGCAAAGCTCTTCCTGTCAGAAGGGCAGAATGGGGTGTCAGACC TCCTCACCTGGGCGAAGAATGAAAGGGCGGAAGCTCTGTCTGGTAAATGC CCAGTTCCACCTACACCCTCTCCGATATTGTAGAAGGAATCGAAAAGAGA GGGATGCCGACATACATACAGTTACTGCCTGTTCTCTATTTTTACCTCCC TTGTCCCCCCCTTCCCTGCCTTCTGCTCCTGCATTCACAGGGATTGGTCC ATCCTTCTGATCGTGTTGTGCAGCATTCTGCACGTGGTAAACCTATCCTT CAGAGGTCCCTACCATCAGTGGAAGGAACAGGGGGAGCAGTGGCCCTCCC GTCATCCGCCAGGAGCTTTGCTCTGAAGCATCAGATAGTTACACCTGCAG CCGTTACTCAAGAAGTGCTGCACATGTGGGAAGACGCCATCCAGGTTTTT GAGGTGTGGGGCCTGCCCACAAGCTGCGAGTTAAGCTTTGAGACTGAGAA GGAAGGGGTGGGGACGGCGGGGACAGCGCCAGGAATGAGGTCAGGGGTGT GTTCAGAAGCTCAGGGGAACGTTCTCCTAGGGCTTGCCAAGGTCCGACTT AGTGCATTTGCTTCTTTTGGGAAGATCATGGGAGGGGGTACCAAGGCTAC TGCTACCACAGCCGCCGATGGGCCCATACTAATCACAAACCCCTTCTCTG GGCTTGTAGTGGGTGAGCTCACGGTGTTACTCTTGCTAAGAGAGGCTGTA TCATCAATGTTGCTGTCAGCTGGAGGGGAAGGGGAGGGGGCAGGAGCAGG AGCAGGAGCAGGAACAGTGACTTCACATTTGGAACCATTGCAGGGGTTGA AGGACCAAGGGTTGTTGGAGGCAGGAAAAGCCCCAAAGGAGAATGAGGAA GTGGAGGAAGAGACCTGTGAGGAAGGATGGAAATCCAAGGTTGACAGGCA TAGTGAGGAGGGTGCAGTTACTAAAAGCTCTTCAGCAGTGCCGCTGACCT TGCCTGCGTATTGCCCTTCAGTGAATGATTCTGCAGAAGGTGACTTTGGA ACATGCTCCCTGTGTGTATGTGGAAAGGTGTGGGGAGATTTTTTACTTTG ATGCCGCAGGGGACACTGAGCAAGATGCATGGGACCCCACACAACTGCCC TATTGCTACACTGGTGTATCTGACACCTCTAGCATGGGTTGTGTGTTCGT ATTTACTGCCCTCAACCAGCCCTAGCTGTAGGACCCTATCTGTAGTCCGA ACAACTCTTTGATTGTTTTACATACCTTACATACCTTCCATATGTGTTCA GAATGTGATGGCCACTGTGGTGAAAGAAAATGCCCCCCAGTCCTCCTCTT TCCCTTGTCCCCTCTCCCGACCCCTCCCCCTTCCATGCACCTGAAAGTGC TTGGAAAATGTGTGGAGTTTGCTTGCATATCATGCGAATTTGAAGTGTGG GAGGTCCTTGGTGCTACTTCACTGTTATACCCCTGATGCAACAACATGTG TCCCCCTTTAAAATTGAGTTTTTTTTAACCCTGTTAATGGATGACTTGGT GCTGGGAAGGGCGGTAGGGCACCATGAGTCTCAGTACAGATAGGTTTTGG GCACACTTGTTCAAGGTGTTATCTAGGGGTCTAGAAATTAATGCTTGCGT ACTTTCTAACACAATCCCTACAGACTTGTCTAGACTTCTCAACCCCAAGC GAGGCGAGGAGCTGGACTCGCATGGACAGAGGCCTAGGTCAAGTCCAGAG AGTGAGAAACCGGCTTTGGGGCAAGAGCGCACCAGTGGAGAATTCCTTGG CCTTGTGCGTCATGTTGTGGAGCTTTCAGCAGTGGGCAAGGTGCCCCTGG GGGAAGGGGCAGATGCAGATGACCCCTACGGTCTTACTGGTTGTATTGTG GAGTACTCTCTCCCGGGCGATCAGGTGAAGGAGGGGGTGGCTGGGGTTTG GGTTGGGGTTGGGGGGGGTTGGGGGGGGAGAGGGAGGGAAATGAATATAT GGAAAGCGATTTTGTTGGTGTGTGGATGATGCCTAAGTTGAGGGGGCATG ATTGATTTCAGGTACACCACAGTGGCAATTACAAAACTGTTAAATGTACC CATAGAAACGCAATATGATGACTAGCCTTTAGCATGCATTTACCCCGCAT TGTTCTGCTACCTCATCAGTGTTGACCTGCACTGTGTGTTTGAGTGTATG CTTGTGCACATAGTCAGTGCTCGTTGTGGTAAACGATAGACTTACTACAC AAAACAGTCATATGATGTAAACCTCTGTATATTGTGTACTTAGAGGTACT TGTTTCAGGATATAGTCCTTCCTGTAAGGCCTGGATTCTACATGGTTTCA TAGTCCATGTGGGTGATTACAGTAGCAGAGTAACGGACATTCTTGTTCCC TCTAGTGGTTGTTCCTGTGGTACCTATTTTGGAGCCAACTGTATGGTTTG AATTTGGCCCTTTTCCCTCACAGCTCTTTTTTATCTAAGCTAATGCAGGA TGGCGGAATTCAACTGTGCTTCCTCCCTCCCTTTCAAATACCATTTCATC TGTGGTGACCAGACTTGTGCCACATCTAGCCGGGAAGGACATGGCGACAG CGACCTGAGCAACCGCAGTGGCAACGTCAATTGCAGCAGCCTTGCCAACA CAGGACATCGTGCTCACACACTGTGGTGGGATGCCGATAGTGCTATTCTG AACTCGCGTACACGCCACGCTGTCAAAGTTAAAGCCTTGGGAGGGAGCAT GACAGATTTAGGACTCGGGTCTCCATCTCTATCTGACCAAAAGGGAGATT GGAGGGGTGGGATTACAACTGCTGGCGATTTTGATCACGGAAATGAGGTC CATGAAGGTTCAGGGGAGGGAGAGCTGGGCAAGCTCCTCGACTGCATCTT TGGCCCAAACAACATCACATTCTTGATCTACTGGAGTGCTGGGGACGGGA CTGGGGACGGGGCGAAGATGGGTGCAGGGCTACAT
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig10892:38..5422+

>mRNA_C-tenellus_contig10892.1.2 ID=mRNA_C-tenellus_contig10892.1.2|Name=mRNA_C-tenellus_contig10892.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=2931bp|location=Sequence derived from alignment at C-tenellus_contig10892:38..5422+ (Choristocarpus tenellus KU2346)
CAGATCTGGGGGGGGGGAAAGGATGGCTCCAGGAGTGTGGGGGTGATATC
TATTCCAGTTCCTGCAAGACCGCTGTTGCAGCACTTGGTAGGGAGGGGCA
AGCACCAACAACAAAAAGTGGGGGGCTCAAAAACAAGTGGCAGGACCGGA
GGGCTGGAGAGAGTGACCACCAGAGGGGCTGGGTCTCGACAGATGGCACA
GTCTATGCTGCGCGTGAGGAGAGGGTTTGGGGCAGCAGATTTGATGGTTG
GTGAGACAGCACTGCTGGAAGAAATGGTGTGTGCTGTTCACGTGAGCGAT
GCCTGTGTGCAGCGCTGGATGGATGCGTCTGTGGAGTTTCTGCTTGTGGA
TGGGAAGTCCAAGGGAGCTGGAGCTAAAGGGGGAGAGGGACAAAAGGGGC
TACAGGGAAGGGAGATTCGGTCTGGGAGTCAACGTTTGGTTACCCAGGAT
GAGGGATGGGGCTTGGATCGGAAACAGGGTCCTCTAGGATTAGGTCACCA
CCGGGGAAGTGAGGCCCCCACCGTGGATCCTGGGGATCAGGTTGTAGGTG
TGGCAAGACTGCAGCTTCGAGATGTGATTCTTTCACCTGAACTGGGAGTA
GTGTCCACCCTGGACCTCACTGAGGTTTTGGACTTCTGGGACGTTGAGGA
TGCTCGTACAGCTGCTGGGATGGGGGGAAGGGAAGGGCACAGAGGACGCA
GTGGGCGCTCTCTTCGCAACCCTCGTAGACGCCGGAGACAGGTGTCGAGA
GGATCAGTAGGGGGTGAATCAGCGTCTGGTGACCACGACCGCCCTCTAAT
TCTTGGAGACAGGGCAATTGGGGCGCTGACTGTCAGCCTTGAGCTTGTCC
CTGCAGAGGGTGACAGTTGGACCCCTAATACCTCAGCTGCGACAGAGGAT
GAACACTATTCTGTGCCTGCTGTGGTGGAGGTGTTAAGAGATTGTGGAGG
GAGGAATCAGCGAGGCTTAGGTCAGCATGCAACCATAGAGAACCGCCAGG
AGCCTGGAGAGGTATCTCAACATGTTGGGTTTGAGACAAGACCGGTTGGG
ACAGCCACTGGGACGGGGGGTATGATTCCTACCCTGGATTCCACACGGCA
ATTTTGGTCCCATCAGTCAGGTGCTGAGGTCATCCTTGCTTCCGTGCCTA
GTCATGATAAGAGTGCTGGGGGTGCACAAGTGGATTTAGGTGGAACCCAA
AGACATAAAGGTGATGCCTCAGACCTTTCTGTCATACAAGAGGTCAAGGG
TGGGGTGAGTTCTGGGGACAGGGGGGCGTTTGGGAGTAGGTTGGTGGATG
CGCCGAGAGCAGTAGAGCAGGGAGAGGATTTGATGGGATTGTTGAGGGAG
GCAAGGGAGGTAATGTCATGCGAGGTGGTGGTGGGGTTGGAGTGTGCTGT
TATAACTTCTGGAGGGACTTCGCTTGAGGGCGTGAAGGTGGCCTACTCTT
GCAACCAGGGATTGGTCCATCCTTCTGATCGTGTTGTGCAGCATTCTGCA
CGTGGTAAACCTATCCTTCAGAGGTCCCTACCATCAGTGGAAGGAACAGG
GGGAGCAGTGGCCCTCCCGTCATCCGCCAGGAGCTTTGCTCTGAAGCATC
AGATAGTTACACCTGCAGCCGTTACTCAAGAAGTGCTGCACATGTGGGAA
GACGCCATCCAGGTTTTTGAGGTGTGGGGCCTGCCCACAAGCTGCGAGTT
AAGCTTTGAGACTGAGAAGGAAGGGGTGGGGACGGCGGGGACAGCGCCAG
GAATGAGGTCAGGGGTGTGTTCAGAAGCTCAGGGGAACGTTCTCCTAGGG
CTTGCCAAGGTCCGACTTAGTGCATTTGCTTCTTTTGGGAAGATCATGGG
AGGGGGTACCAAGGCTACTGCTACCACAGCCGCCGATGGGCCCATACTAA
TCACAAACCCCTTCTCTGGGCTTGTAGTGGGTGAGCTCACGGTGTTACTC
TTGCTAAGAGAGGCTGTATCATCAATGTTGCTGTCAGCTGGAGGGGAAGG
GGAGGGGGCAGGAGCAGGAGCAGGAGCAGGAACAGTGACTTCACATTTGG
AACCATTGCAGGGGTTGAAGGACCAAGGGTTGTTGGAGGCAGGAAAAGCC
CCAAAGGAGAATGAGGAAGTGGAGGAAGAGACCTGTGAGGAAGGATGGAA
ATCCAAGGTTGACAGGCATAGTGAGGAGGGTGCAGTTACTAAAAGCTCTT
CAGCAGTGCCGCTGACCTTGCCTGCGTATTGCCCTTCAGTGAATGATTCT
GCAGAAGACTTGTCTAGACTTCTCAACCCCAAGCGAGGCGAGGAGCTGGA
CTCGCATGGACAGAGGCCTAGGTCAAGTCCAGAGAGTGAGAAACCGGCTT
TGGGGCAAGAGCGCACCAGTGGAGAATTCCTTGGCCTTGTGCGTCATGTT
GTGGAGCTTTCAGCAGTGGGCAAGGTGCCCCTGGGGGAAGGGGCAGATGC
AGATGACCCCTACGGTCTTACTGGTTGTATTGTGGAGTACTCTCTCCCGG
GCGATCAGACTTGTGCCACATCTAGCCGGGAAGGACATGGCGACAGCGAC
CTGAGCAACCGCAGTGGCAACGTCAATTGCAGCAGCCTTGCCAACACAGG
ACATCGTGCTCACACACTGTGGTGGGATGCCGATAGTGCTATTCTGAACT
CGCGTACACGCCACGCTGTCAAAGTTAAAGCCTTGGGAGGGAGCATGACA
GATTTAGGACTCGGGTCTCCATCTCTATCTGACCAAAAGGGAGATTGGAG
GGGTGGGATTACAACTGCTGGCGATTTTGATCACGGAAATGAGGTCCATG
AAGGTTCAGGGGAGGGAGAGCTGGGCAAGCTCCTCGACTGCATCTTTGGC
CCAAACAACATCACATTCTTGATCTACTGGAGTGCTGGGGACGGGACTGG
GGACGGGGCGAAGATGGGTGCAGGGCTACAT
back to top