mRNA_C-tenellus_contig10884.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10884.1.1
Unique NamemRNA_C-tenellus_contig10884.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10884.1.1 vs. uniprot
Match: D7FS07_ECTSI (Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS07_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.600e-5
Identity = 129/387 (33.33%), Postives = 163/387 (42.12%), Query Frame = 1 
Query:  673 DGRLEVVEYLLAAGASPDGVAQEDGGCGATPLHRAAFGGRLACVEALIGSGANLAAKDASFLDMRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXALGKTPLDLVALSPP---------APSNKSGSTEVKVSVGRGCTEQDEIRTLLLQFEVQAGHGEGEEGKSL-----------KVLAIQSPAQRDGKDLAAVEPGNADSIYIPSQALLLEQPLTSISLSSKEAEGKRHNEEEDSPVPVGREGSGGELGVVVEKEVT------NECQSVTAGICTARMLDRSTTLKGEPVPESMAESSSGQDTVREVAPPPATTTEAILDPPNGAVGEGRDKGMLGAGMRSGLVCRECGDRKMVMARSACCKALVCKQCLWRSGVVRGGQCRRCK 1755
            +GRL VV YLL AGASPDGV  + GGCGAT                         A D SF DMRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXA G + LD++ LS P         +P ++  S          C+        ++     AG+  G   ++L           +V  + +     G D      G A S  I   A   E    S S+ S E              PV +  +G ELGV  E EV         C    +G+  A +   ST  +G+    S+A                  T   +L+    AVG+    G        G+ C EC   K+VM R+ CC  L+CK C  R    R   CRRC+
Sbjct:   69 NGRLSVVLYLLEAGASPDGVPADAGGCGATXXXXXXXXXXXXXXXXXXXXXXXTNAADTSFADMRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGNSALDVLCLSVPILPEAMPARSPHSEGSSGAXXXXXXXXCS--------IVVLSSGAGNNWGGVREALERHGGLRRMRARVEGLGNAGSGGGGD----HQGEAGSGCIDPGARSSECEKESASVLSAE--------------PVVQT-AGAELGVR-EPEVAALPGQETSCSKKRSGVDAAELA--STPSQGQLGAVSVA-----------------GTERVVLER---AVGKSPRSG---GXXXXGVPCGECLLPKVVMVRTTCCGGLICKPCA-RDVCARRQSCRRCR 401
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10884.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS07_ECTSI2.600e-533.33Chain A, Crystal Structure Of A Designed Full Cons... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10884contigC-tenellus_contig10884:100..2200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1794
Hectar predicted targeting categoryother localisation
Exons2
Cds size909
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789153.1495893-UTR-C-tenellus_contig10884:99..1231680789153.1495893-UTR-C-tenellus_contig10884:99..123Choristocarpus tenellus KU2346UTRC-tenellus_contig10884 100..123 -
1680789153.1699464-UTR-C-tenellus_contig10884:1032..11201680789153.1699464-UTR-C-tenellus_contig10884:1032..1120Choristocarpus tenellus KU2346UTRC-tenellus_contig10884 1033..1120 -
1680789153.1784685-UTR-C-tenellus_contig10884:1427..22001680789153.1784685-UTR-C-tenellus_contig10884:1427..2200Choristocarpus tenellus KU2346UTRC-tenellus_contig10884 1428..2200 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789153.1603553-CDS-C-tenellus_contig10884:123..10321680789153.1603553-CDS-C-tenellus_contig10884:123..1032Choristocarpus tenellus KU2346CDSC-tenellus_contig10884 124..1032 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10884.1.1prot_C-tenellus_contig10884.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10884 124..1032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10884.1.1

>prot_C-tenellus_contig10884.1.1 ID=prot_C-tenellus_contig10884.1.1|Name=mRNA_C-tenellus_contig10884.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=303bp
MRTPLHKAVAERHINTVKALLEAGANTSIKDALGKTPLDLVALSPPAPSN
KSGSTEVKVSVGRGCTEQDEIRTLLLQFEVQAGHGEGEEGKSLKVLAIQS
PAQRDGKDLAAVEPGNADSIYIPSQALLLEQPLTSISLSSKEAEGKRHNE
EEDSPVPVGREGSGGELGVVVEKEVTNECQSVTAGICTARMLDRSTTLKG
EPVPESMAESSSGQDTVREVAPPPATTTEAILDPPNGAVGEGRDKGMLGA
GMRSGLVCRECGDRKMVMARSACCKALVCKQCLWRSGVVRGGQCRRCKGG
YT*
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mRNA from alignment at C-tenellus_contig10884:100..2200-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10884.1.1 ID=mRNA_C-tenellus_contig10884.1.1|Name=mRNA_C-tenellus_contig10884.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2101bp|location=Sequence derived from alignment at C-tenellus_contig10884:100..2200- (Choristocarpus tenellus KU2346)
GGGTTGCGAAAAAAGGATGAACCTTGTATTCAGCTCATTTTGCCCCCTTC
ACAGCAACGGAGAGAACAAGGGCTGCCCTTGCAGGTCTCCGATAAAATTG
CTTTGATTCCTTTCCCCTTTTTCATCATCAGCTTAAGCCAACTACCTTCA
TTGGCTACATTTTCTCATTACAAGAAGATGTATTTGCTTGCAGTATCCTC
TTGTCTTCAGATATGTTTGTTGGGTTGTTACTTTGAATTGCTACTCTGAC
AGCGATCACCTTCACTGATCCCTTATCCGGTGGATAGAAATCTGATCACT
AATGGAAGTATCTGGACTGTGGCAGAATGGGGCGATATCGATCGCTTGAG
GATTCTTGTGGGTAGGAGAGGGCATAATCCCAACGCCGTGGATACGTACG
GCTACACTCCGCTTCACTATGCCTCCCAACGTAAGACTTTCCTGCTGTTA
ATTGATATTGCCATTTTTTTGTCAAGAGATCTAGTTGAAAGACGTCAAGG
TAAAGTACCAGCATTGCCCGCAACGATCTTTTCACAGTTGCCCACCCTGT
AGGATAATACCAAACGCTCCCACGCGTGGCTTCCAGTCGAAACAGCTGTT
TACTGAGATTTCTAAAGTAGTTGATTATGGTGTTTGCCGTCACCAACATC
TGTATTTTATTTCCCACGTATAGATGGGCGATTGGAGGTTGTGGAGTACC
TTTTAGCAGCAGGCGCTAGTCCTGATGGTGTTGCACAAGAGGATGGTGGC
TGTGGAGCCACTCCACTGCACAGGTATGGATCTCCTGCAAGGAAAAAAAA
AAATGTGTTGGAGCTGAGATCGACATTATTTTGGAACTGATCGGGTTGGG
AATGGGCGCATGAACATGAGAGGATAAAAGTAATCTCAAAGTCTCACATA
TCATAATATGGACGACAAAAGTTATCACTACTGACCAAAATCGGCCCCTA
TTTGCACTGATGTCTTATGCCCAATGCCTCTCTGCTATAATACTCGTGAA
ATCTGGTGTGCTCTTCTCTTCCTCCACGTGATGATCAATATCTTGATCCC
TCCCAAATGCCACCATCATTCCCGTCACAGGGCGGCTTTCGGCGGTAGGC
TAGCATGTGTTGAGGCACTGATAGGATCCGGAGCAAATCTTGCCGCTAAG
GATGCCTCCTTCCTGGACATGCGAACCCCTCTCCACAAGGCTGTCGCTGA
GCGCCACATCAACACGGTAAAGGCGCTTCTGGAAGCAGGAGCCAACACAA
GCATCAAGGATGCCCTTGGAAAAACCCCTCTCGACCTAGTAGCTCTGAGC
CCCCCGGCCCCAAGTAACAAGAGTGGGAGCACTGAAGTCAAAGTAAGTGT
GGGCAGAGGGTGCACGGAACAGGATGAGATACGCACCTTGCTGTTGCAGT
TTGAGGTGCAGGCAGGACATGGAGAAGGTGAGGAGGGGAAGTCTCTGAAA
GTCTTGGCAATTCAAAGCCCTGCCCAAAGAGATGGAAAGGACCTTGCAGC
GGTTGAACCAGGGAATGCGGACAGCATTTACATACCATCCCAAGCACTAC
TTTTAGAGCAACCATTGACAAGTATTTCATTGTCGAGCAAAGAAGCAGAA
GGGAAGAGGCATAATGAGGAGGAGGATTCTCCTGTGCCAGTAGGAAGGGA
AGGTTCTGGAGGAGAACTGGGGGTAGTGGTAGAGAAGGAGGTGACAAATG
AATGTCAGTCGGTGACTGCTGGGATATGTACGGCCAGAATGCTGGATCGT
AGCACTACATTGAAAGGTGAACCTGTTCCAGAGTCCATGGCAGAGAGTAG
CAGTGGTCAAGATACAGTACGAGAAGTAGCTCCACCTCCTGCTACCACCA
CTGAGGCAATCCTTGATCCCCCAAATGGGGCTGTTGGGGAGGGCAGGGAC
AAAGGTATGCTGGGTGCTGGAATGAGGAGTGGCCTGGTTTGCAGAGAGTG
TGGAGATCGCAAGATGGTCATGGCAAGGTCAGCTTGCTGCAAGGCCCTGG
TGTGCAAGCAGTGTCTGTGGAGAAGTGGTGTGGTGAGGGGAGGACAGTGC
CGGAGGTGCAAGGGAGGTTACACATAAAGACACTGTGATTGAACTTGTCA
G
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Coding sequence (CDS) from alignment at C-tenellus_contig10884:100..2200-

>mRNA_C-tenellus_contig10884.1.1 ID=mRNA_C-tenellus_contig10884.1.1|Name=mRNA_C-tenellus_contig10884.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=909bp|location=Sequence derived from alignment at C-tenellus_contig10884:100..2200- (Choristocarpus tenellus KU2346)
ATGCGAACCCCTCTCCACAAGGCTGTCGCTGAGCGCCACATCAACACGGT
AAAGGCGCTTCTGGAAGCAGGAGCCAACACAAGCATCAAGGATGCCCTTG
GAAAAACCCCTCTCGACCTAGTAGCTCTGAGCCCCCCGGCCCCAAGTAAC
AAGAGTGGGAGCACTGAAGTCAAAGTAAGTGTGGGCAGAGGGTGCACGGA
ACAGGATGAGATACGCACCTTGCTGTTGCAGTTTGAGGTGCAGGCAGGAC
ATGGAGAAGGTGAGGAGGGGAAGTCTCTGAAAGTCTTGGCAATTCAAAGC
CCTGCCCAAAGAGATGGAAAGGACCTTGCAGCGGTTGAACCAGGGAATGC
GGACAGCATTTACATACCATCCCAAGCACTACTTTTAGAGCAACCATTGA
CAAGTATTTCATTGTCGAGCAAAGAAGCAGAAGGGAAGAGGCATAATGAG
GAGGAGGATTCTCCTGTGCCAGTAGGAAGGGAAGGTTCTGGAGGAGAACT
GGGGGTAGTGGTAGAGAAGGAGGTGACAAATGAATGTCAGTCGGTGACTG
CTGGGATATGTACGGCCAGAATGCTGGATCGTAGCACTACATTGAAAGGT
GAACCTGTTCCAGAGTCCATGGCAGAGAGTAGCAGTGGTCAAGATACAGT
ACGAGAAGTAGCTCCACCTCCTGCTACCACCACTGAGGCAATCCTTGATC
CCCCAAATGGGGCTGTTGGGGAGGGCAGGGACAAAGGTATGCTGGGTGCT
GGAATGAGGAGTGGCCTGGTTTGCAGAGAGTGTGGAGATCGCAAGATGGT
CATGGCAAGGTCAGCTTGCTGCAAGGCCCTGGTGTGCAAGCAGTGTCTGT
GGAGAAGTGGTGTGGTGAGGGGAGGACAGTGCCGGAGGTGCAAGGGAGGT
TACACATAA
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