mRNA_C-tenellus_contig10881.1.1 (mRNA) Choristocarpus tenellus KU2346
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Overview
Homology
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Match: D7G9I0_ECTSI (C2H2 zinc finger, ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I0_ECTSI) HSP 1 Score: 271 bits (693), Expect = 2.440e-79 Identity = 231/571 (40.46%), Postives = 276/571 (48.34%), Query Frame = 2
Query: 236 VYNAGPAVGIGIETLRRVFLVYGAIEDVVCPVPTRPTVYISYVD-------------------------------------ASAAALARRSRNRPADIEQRIRGGDSKAATASDVFSPSPDKACPLLGRWLKVDFVDRRV-------------------DCPSRSDHESGHLTLLPFDVMAATGESASDNKVTDNSSPCPLCARPCAAGRGLRMHIIDAHSADLQSRDHLLSLLTSSNRPSSPKETMPFSRPEPRSIITPQIPGCSIQQAWRFASG----GGSAKFEGVQGSALSPGLIAARDGDLEALQCLVEGPDKWNPCLELDKYGSGALEWAAGGGHLEVCRYLIFSCGMEAARANPRRGRAKLRTPLHXXXXXXXXXXXXXXIQDSEHHPPSQLPKSPMLPLDAEGQENTVKTVGGGCGVL-----------PDPVAGDGTTPFHWAVWGGHLPVCKLLYSYGADPCRSNSHGXXXXXXXXXXXXXXXXRWLNTLKCKSGGRGAGGLDWGKAXXXXXXXXXXXXXXXXXXXXXXLLRESG--------VAAEAWGCDQGGYRPADV 1711
VYN GPAVG+ TLRRVF YG +E V CP P V IS+ + S+AA AR RNRP +IE+R+R G AA ASDVF+P+P + CPLLGRWLKV F D RV P+ H SG FD +AA G ++ D + T PCPLC R C RGLRMH++ AH +++ RDH + LL + P E + T + + QA G G L PG AAR GDL AL+ LVE + W P LDK GS L+WAAG G LEVCRYL+ CG++A A P RGR + RT XXXXXXXXXXXXXX++ P+DA V VGGG G L PD A +GTTP HWA WG HL C+LL+ GAD N++G RWL+ + + GG AGGLDW K XXXXXXXXXXXXXXXXXXXX V AW D+GGY P DV
Sbjct: 71 VYNTGPAVGVDEVTLRRVFEAYGEVERVCCPNPAAARVLISFHEIHGQMLVRHPVSSRPCPSRTTSGTAAYGGTLAERPDRVSSAARARAERNRPPEIEERVRVGVPGAAAASDVFAPTPGEPCPLLGRWLKVSFADVRVRHNGGXXXXXXXXXXXXXXXAPAVPSHLSG---FKAFDALAAGGTASCDARPT----PCPLCGRTCGGQRGLRMHLVGAHPLEVKDRDHFVQLLQRGSASLPPMEA------PGTDLATRRNDHDGVGQATEEDGGAPAVGXXXXXXXXXXXXLPPGFAAARAGDLGALKRLVE-EEGWEPKTALDKNGSSPLDWAAGEGRLEVCRYLLHECGVDAGGACPTRGRGEGRTXXXXXXXXXXXXXXXXXLETPR-------------PVDAAA---AVSVVGGGDGTLVSPGGERTFVSPDVTAAEGTTPLHWACWGAHLATCRLLFERGADHRSVNAYGCNVAHWCGLSGDVDVCRWLSR-RVEEGG--AGGLDWAKTNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVVPRRAWERDEGGYTPEDV 608
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Match: A0A6H5K2T6_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T6_9PHAE) HSP 1 Score: 249 bits (636), Expect = 2.110e-71 Identity = 202/530 (38.11%), Postives = 245/530 (46.23%), Query Frame = 2
Query: 236 VYNAGPAVGIGIETLRRVFLVYGAIEDVVCPVPTRPTVYISYVDASAAALARRSRNRPADIEQRIRGGDSKAATASDVFSPSPDKACPLLGRWLKVDFVDRRV-----DCPSRSDHESGHLTLLPFDVMAATGESASDNKVTDNSSPCPLCARPCAAGRGLRMHIIDAHSADLQSRDHLLSLLTSSNRPSSPKETMPFSRPEPRSIITPQIPGCSIQQAWRFASGGGSAKFEG--------------VQGSALSPGLIAARDGDLEALQCLVEGPDKWNPCLELDKYGSGALEWAAGGGHLEVCRYLIFSCGMEAARANPRRGRAKLRTPLHXXXXXXXXXXXXXXIQDSEHHPPSQLPKSPMLPLDAEGQENTVKTVGGGCGVL-----------PDPVAGDGTTPFHWAVWGGHLPVCKLLYSYGADPCRSNSHGXXXXXXXXXXXXXXXXRWLNTLKCKSGGRGAGGLDWGKAXXXXXXXXXXXXXXXXXXXXXXLLRESGVAA--------EAWGCDQGGYRPADV 1711
VYN GP VG+ TLRRVF YG +E V CP P V IS+ + S+AA AR RNRP +IE+R+R G AA ASDVF+P+P + CPLLGRWLK RR P+ + SG FD +AA G ++ D + T PCPLC R C RGLRMH++ AH +++ R+H + LL + P E PG + +G G EG AL PG AAR GDL AL+ LVE + W P LDK GS L+WAAG G LEVCR + L TP P+DA V VGGG G L PD A +GTTP HWA WG HL C+LL+ GAD N++G RWL+ + + GG GGLDW K XXXXXXXXXXXXXXXXXXXL ++ AW D+GGY P DV
Sbjct: 108 VYNTGPVVGVDEVTLRRVFEAYGEVERVYCPNPAAARVLISFHEVSSAARARAERNRPPEIEERVRVGVPGAAAASDVFAPTPGEPCPLLGRWLKAGSSQRRRRRLQGKLPAATRXLSG---FKAFDALAAGGTASCDARPT----PCPLCGRTCGGQRGLRMHLVGAHPLEVKDRNHFVQLLQRGSASLPPMEA----------------PGTDLATRRNGHNGIGQGTEEGGGAPAVXXXXXXXXXXXXALLPGFAAARAGDLGALKRLVE-EEGWAPKTALDKNGSSPLDWAAGEGRLEVCRTSLXXXXXXXXXXXXX---LLLETP---------------------------------RPVDAAA---AVSVVGGGDGTLVSPGXXXXXXXPDVTAAEGTTPLHWACWGAHLATCRLLFERGADHRSVNAYGCNVAHWCGLSGDVDVCRWLSR-RVEEGG--PGGLDWAKTNLQXXXXXXXXXXXXXXXXXXXLAEQTTSXXXXXXXGPRRAWEKDEGGYTPEDV 571
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Match: A0A024T8V0_9STRA (Fe2OG dioxygenase domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T8V0_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 2.590e-12 Identity = 59/174 (33.91%), Postives = 64/174 (36.78%), Query Frame = 2
Query: 935 LSPGLIAARDGDLEALQCLVEGPDKWNPCLELDKYGSGALEWAAGGGHLEVCRYLIFSCGMEAARANPRRGRAKLRTPLHXXXXXXXXXXXXXXIQDSEHHPPSQLPKSPMLPLDAEGQENTVKTVGGGCGVLPDPVAGDGTTPFHWAVWGGHLPVCKLLYSYGADPCRSNSHG 1456
L PGL R GDLE LQ V WN D++GS L WAAGGGHL + +YLI S GM +Q GG P AGDGTTPFH AVW H C LL GADP N HG
Sbjct: 266 LGPGLDECRCGDLEGLQTQVAAG--WNCHTSRDRHGSSGLLWAAGGGHLAIVQYLIESLGMRPV----------------------------DDVQAHRRGYDGXXXXXXXXXXXXXXXXXXXVVHGGQSANTP---AGDGTTPFHLAVWQNHQSTCALLVQLGADPHAVNRHG 406
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Match: W4FBF0_9STRA (P4Hc domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FBF0_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 3.420e-12 Identity = 62/176 (35.23%), Postives = 69/176 (39.20%), Query Frame = 2
Query: 935 LSPGLIAARDGDLEALQCLVEGPDKWNPCLELDKYGSGALEWAAGGGHLEVCRYLIFSCGMEAARANPRRGRAKLRTPLHXXXXXXXXXXXXXXIQDSEHHPPSQ--LPKSPMLPLDAEGQENTVKTVGGGCGVLPDPVAGDGTTPFHWAVWGGHLPVCKLLYSYGADPCRSNSHG 1456
L PGL R GDL LQ V W+ D++GS L WAAGGGHL+V +YLI S GM +QD + H V GG V D A DGTTPFH AVW H C LL GADP NSHG
Sbjct: 264 LGPGLDECRCGDLLGLQAQVASG--WDCHTSRDRHGSSGLLWAAGGGHLDVVKYLIESLGMRP-------------------------------VQDIQAHRRGYDGXXXXXXXXXXXXXXXXXXXVVHGGQSV--DTPAVDGTTPFHLAVWQNHQRTCALLLQLGADPHVVNSHG 404
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Match: A0A7S2DLB6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DLB6_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 8.060e-11 Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 2
Query: 941 PGLIAARDGDLEALQCLVEGPDKWNPCLELDKYGSGALEWAAGGGHLEVCRYLIFSCGMEA 1123
PGL AAR GDL +LQ LV G W+P DK+GS +L WAAG GHL+VC+YL+ +C + A
Sbjct: 13 PGLEAARSGDLASLQALVIGG--WDPHRATDKHGSNSLMWAAGEGHLQVCQYLVNTCKVPA 71
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Match: A0A813FNY0_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FNY0_POLGL) HSP 1 Score: 75.1 bits (183), Expect = 8.170e-11 Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 2
Query: 935 LSPGLIAARDGDLEALQCLVEGPDKWNPCLELDKYGSGALEWAAGGGHLEVCRYLIFSCGMEAARAN 1135
L PG+ AARDGDL+ L+ LV+G +W+P D +G+G L WAAG GH+ VCR+L+ G++ +R N
Sbjct: 130 LDPGIRAARDGDLDELKRLVQG-GRWHPLTAADHHGNGPLHWAAGSGHVAVCRWLVEEAGVDPSRQN 195
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Match: A0A024UDI9_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UDI9_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 1.060e-10 Identity = 91/298 (30.54%), Postives = 123/298 (41.28%), Query Frame = 2
Query: 602 VMAATGESASDNKVTDNSSPCPLCARPCAAGRGLRMHII------------DAHSADLQSRDHLLSLLTSSNRPSSPKETMPFSRPEPRSIITPQIPGCSIQQAWRFASGGGSAKFEGVQGSALSPGLIAARDGDLEALQCLVEGPDKWNPCLELDKYGSGALEWAAGGGHLEVCRYLIFSCGMEAARANPRRGRAKLRTPLHXXXXXXXXXXXXXXIQDSEHHPPSQLPKSPMLPLDAEGQENTVKTVGGGCGVLPDPVAGDGTTPFHWAVWGGHLPVCKLLYSYGADPCRS-NSHG 1456
V+ T + T PC +C + +G+R+H + +A + DLQ + L+ S +S P S P S+ P R ++ PG++AA+ G L L+ LVE WNP E D G AL WAAG GH+++C YL+ +CG++A +R R+PLHXXXXXXXXXXXXXX S P D DGTT FH+AVW L C L + G S NS+G
Sbjct: 128 VLTFTSHRHLEWHATHGRLPCSMCGKFFKGPKGIRVHQMLHHDSSFASAQGEALATDLQIVVYTAPLVVPSRDSASSTSPSPTSHPPVPSVPAPIA---------RISN----------------PGILAAQGGHLSTLKQLVEQRG-WNPLSE-DHNGCNALVWAAGAGHVDICEYLVTTCGLDARALQGKRDMR--RSPLHXXXXXXXXXXXXXXXXXXXXDVDS--------PTD------------------------DGTTAFHYAVWNAQLATCVWLVTTGQCNVHSINSYG 364
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Match: A0A448Z0L5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z0L5_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 3.030e-10 Identity = 70/194 (36.08%), Postives = 93/194 (47.94%), Query Frame = 2
Query: 899 GSAKFEGV--QGSALSPGLIAARDGDLEALQCLVEGPDKWNPCLELDKYGSGALEWAAGGGHLEVCRYLIFSCGMEAARANPRR----GRAKLRTPLHXXXXXXXXXXXXXXIQDSEHHPPSQLPKSPMLPLDA--EGQENTVKTVGGGCGVLPDPVAGDGTTPFHWAVWGGHLPVCKLLYSYGADPCRSNSHG 1456
GS+ +GV GS P + R+G+LE L+ VE + P D+ GS L WAAGGGHL++ RYL+ CG + ++ + GR XXXXXXXXXX S +G E + ++V G L + GDGTT F WA W HLPV + LY +G D NS+G
Sbjct: 294 GSSDGKGVVRSGSGKDP-IDHVREGNLEGLKNAVENHG-YRPSRVFDEKGSTPLLWAAGGGHLDITRYLVEVCGCDPCQSQRGKRSFWGRXXXXXXXXXXXXXXXXXXLSLATGGSNDDDGGNCXXXXXXXXXXXXDGPERSPRSVP--LGXLLEAKTGDGTTAFGWACWQRHLPVMECLYGHGCDIHGRNSYG 483
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Match: A0A812S2I1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812S2I1_9DINO) HSP 1 Score: 70.9 bits (172), Expect = 3.250e-10 Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 2
Query: 923 QGSALSPGLIAARDGDLEALQCLVEGPDKWNPCLELDKYGSGALEWAAGGGHLEVCRYLIFSCGMEA 1123
+ S++ PGL AA+ GDL ALQ LVE W+ D G+GAL WAAGGGH+EVC YL+ GM+A
Sbjct: 109 ESSSIDPGLDAAQRGDLLALQALVERG--WDANKATDHRGNGALHWAAGGGHVEVCEYLLRELGMDA 173
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Match: A0A7S4VCC4_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4VCC4_9DINO) HSP 1 Score: 72.0 bits (175), Expect = 3.410e-10 Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 2
Query: 935 LSPGLIAARDGDLEALQCLVEGPDKWNPCLELDKYGSGALEWAAGGGHLEVCRYLIFSCGMEAAR 1129
L G+ AARDG LE L+CLV+ +W P D G+G L WAAG GHL+VCR+L+ G++ AR
Sbjct: 200 LDLGMQAARDGQLEVLRCLVQ-TGRWRPLTACDHRGNGPLHWAAGAGHLDVCRWLVEETGLDPAR 263 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10881.1.1 >prot_C-tenellus_contig10881.1.1 ID=prot_C-tenellus_contig10881.1.1|Name=mRNA_C-tenellus_contig10881.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=369bp MAATGESASDNKVTDNSSPCPLCARPCAAGRGLRMHIIDAHSADLQSRDHback to top mRNA from alignment at C-tenellus_contig10881:2683..5425+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10881.1.1 ID=mRNA_C-tenellus_contig10881.1.1|Name=mRNA_C-tenellus_contig10881.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2743bp|location=Sequence derived from alignment at C-tenellus_contig10881:2683..5425+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10881:2683..5425+ >mRNA_C-tenellus_contig10881.1.1 ID=mRNA_C-tenellus_contig10881.1.1|Name=mRNA_C-tenellus_contig10881.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1107bp|location=Sequence derived from alignment at C-tenellus_contig10881:2683..5425+ (Choristocarpus tenellus KU2346)back to top |