mRNA_C-tenellus_contig10881.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10881.1.1
Unique NamemRNA_C-tenellus_contig10881.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Match: D7G9I0_ECTSI (C2H2 zinc finger, ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I0_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 2.440e-79
Identity = 231/571 (40.46%), Postives = 276/571 (48.34%), Query Frame = 2
Query:  236 VYNAGPAVGIGIETLRRVFLVYGAIEDVVCPVPTRPTVYISYVD-------------------------------------ASAAALARRSRNRPADIEQRIRGGDSKAATASDVFSPSPDKACPLLGRWLKVDFVDRRV-------------------DCPSRSDHESGHLTLLPFDVMAATGESASDNKVTDNSSPCPLCARPCAAGRGLRMHIIDAHSADLQSRDHLLSLLTSSNRPSSPKETMPFSRPEPRSIITPQIPGCSIQQAWRFASG----GGSAKFEGVQGSALSPGLIAARDGDLEALQCLVEGPDKWNPCLELDKYGSGALEWAAGGGHLEVCRYLIFSCGMEAARANPRRGRAKLRTPLHXXXXXXXXXXXXXXIQDSEHHPPSQLPKSPMLPLDAEGQENTVKTVGGGCGVL-----------PDPVAGDGTTPFHWAVWGGHLPVCKLLYSYGADPCRSNSHGXXXXXXXXXXXXXXXXRWLNTLKCKSGGRGAGGLDWGKAXXXXXXXXXXXXXXXXXXXXXXLLRESG--------VAAEAWGCDQGGYRPADV 1711
            VYN GPAVG+   TLRRVF  YG +E V CP P    V IS+ +                                      S+AA AR  RNRP +IE+R+R G   AA ASDVF+P+P + CPLLGRWLKV F D RV                     P+   H SG      FD +AA G ++ D + T    PCPLC R C   RGLRMH++ AH  +++ RDH + LL   +    P E           + T +     + QA     G    G            L PG  AAR GDL AL+ LVE  + W P   LDK GS  L+WAAG G LEVCRYL+  CG++A  A P RGR + RT   XXXXXXXXXXXXXX++                P+DA      V  VGGG G L           PD  A +GTTP HWA WG HL  C+LL+  GAD    N++G                RWL+  + + GG  AGGLDW K   XXXXXXXXXXXXXXXXXXXX              V   AW  D+GGY P DV
Sbjct:   71 VYNTGPAVGVDEVTLRRVFEAYGEVERVCCPNPAAARVLISFHEIHGQMLVRHPVSSRPCPSRTTSGTAAYGGTLAERPDRVSSAARARAERNRPPEIEERVRVGVPGAAAASDVFAPTPGEPCPLLGRWLKVSFADVRVRHNGGXXXXXXXXXXXXXXXAPAVPSHLSG---FKAFDALAAGGTASCDARPT----PCPLCGRTCGGQRGLRMHLVGAHPLEVKDRDHFVQLLQRGSASLPPMEA------PGTDLATRRNDHDGVGQATEEDGGAPAVGXXXXXXXXXXXXLPPGFAAARAGDLGALKRLVE-EEGWEPKTALDKNGSSPLDWAAGEGRLEVCRYLLHECGVDAGGACPTRGRGEGRTXXXXXXXXXXXXXXXXXLETPR-------------PVDAAA---AVSVVGGGDGTLVSPGGERTFVSPDVTAAEGTTPLHWACWGAHLATCRLLFERGADHRSVNAYGCNVAHWCGLSGDVDVCRWLSR-RVEEGG--AGGLDWAKTNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVVPRRAWERDEGGYTPEDV 608          
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Match: A0A6H5K2T6_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T6_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 2.110e-71
Identity = 202/530 (38.11%), Postives = 245/530 (46.23%), Query Frame = 2
Query:  236 VYNAGPAVGIGIETLRRVFLVYGAIEDVVCPVPTRPTVYISYVDASAAALARRSRNRPADIEQRIRGGDSKAATASDVFSPSPDKACPLLGRWLKVDFVDRRV-----DCPSRSDHESGHLTLLPFDVMAATGESASDNKVTDNSSPCPLCARPCAAGRGLRMHIIDAHSADLQSRDHLLSLLTSSNRPSSPKETMPFSRPEPRSIITPQIPGCSIQQAWRFASGGGSAKFEG--------------VQGSALSPGLIAARDGDLEALQCLVEGPDKWNPCLELDKYGSGALEWAAGGGHLEVCRYLIFSCGMEAARANPRRGRAKLRTPLHXXXXXXXXXXXXXXIQDSEHHPPSQLPKSPMLPLDAEGQENTVKTVGGGCGVL-----------PDPVAGDGTTPFHWAVWGGHLPVCKLLYSYGADPCRSNSHGXXXXXXXXXXXXXXXXRWLNTLKCKSGGRGAGGLDWGKAXXXXXXXXXXXXXXXXXXXXXXLLRESGVAA--------EAWGCDQGGYRPADV 1711
            VYN GP VG+   TLRRVF  YG +E V CP P    V IS+ + S+AA AR  RNRP +IE+R+R G   AA ASDVF+P+P + CPLLGRWLK     RR        P+ +   SG      FD +AA G ++ D + T    PCPLC R C   RGLRMH++ AH  +++ R+H + LL   +    P E                 PG  +       +G G    EG                  AL PG  AAR GDL AL+ LVE  + W P   LDK GS  L+WAAG G LEVCR  +                  L TP                                  P+DA      V  VGGG G L           PD  A +GTTP HWA WG HL  C+LL+  GAD    N++G                RWL+  + + GG   GGLDW K    XXXXXXXXXXXXXXXXXXXL  ++             AW  D+GGY P DV
Sbjct:  108 VYNTGPVVGVDEVTLRRVFEAYGEVERVYCPNPAAARVLISFHEVSSAARARAERNRPPEIEERVRVGVPGAAAASDVFAPTPGEPCPLLGRWLKAGSSQRRRRRLQGKLPAATRXLSG---FKAFDALAAGGTASCDARPT----PCPLCGRTCGGQRGLRMHLVGAHPLEVKDRNHFVQLLQRGSASLPPMEA----------------PGTDLATRRNGHNGIGQGTEEGGGAPAVXXXXXXXXXXXXALLPGFAAARAGDLGALKRLVE-EEGWAPKTALDKNGSSPLDWAAGEGRLEVCRTSLXXXXXXXXXXXXX---LLLETP---------------------------------RPVDAAA---AVSVVGGGDGTLVSPGXXXXXXXPDVTAAEGTTPLHWACWGAHLATCRLLFERGADHRSVNAYGCNVAHWCGLSGDVDVCRWLSR-RVEEGG--PGGLDWAKTNLQXXXXXXXXXXXXXXXXXXXLAEQTTSXXXXXXXGPRRAWEKDEGGYTPEDV 571          
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Match: A0A024T8V0_9STRA (Fe2OG dioxygenase domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T8V0_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.590e-12
Identity = 59/174 (33.91%), Postives = 64/174 (36.78%), Query Frame = 2
Query:  935 LSPGLIAARDGDLEALQCLVEGPDKWNPCLELDKYGSGALEWAAGGGHLEVCRYLIFSCGMEAARANPRRGRAKLRTPLHXXXXXXXXXXXXXXIQDSEHHPPSQLPKSPMLPLDAEGQENTVKTVGGGCGVLPDPVAGDGTTPFHWAVWGGHLPVCKLLYSYGADPCRSNSHG 1456
            L PGL   R GDLE LQ  V     WN     D++GS  L WAAGGGHL + +YLI S GM                                 +Q                              GG     P   AGDGTTPFH AVW  H   C LL   GADP   N HG
Sbjct:  266 LGPGLDECRCGDLEGLQTQVAAG--WNCHTSRDRHGSSGLLWAAGGGHLAIVQYLIESLGMRPV----------------------------DDVQAHRRGYDGXXXXXXXXXXXXXXXXXXXVVHGGQSANTP---AGDGTTPFHLAVWQNHQSTCALLVQLGADPHAVNRHG 406          
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Match: W4FBF0_9STRA (P4Hc domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FBF0_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.420e-12
Identity = 62/176 (35.23%), Postives = 69/176 (39.20%), Query Frame = 2
Query:  935 LSPGLIAARDGDLEALQCLVEGPDKWNPCLELDKYGSGALEWAAGGGHLEVCRYLIFSCGMEAARANPRRGRAKLRTPLHXXXXXXXXXXXXXXIQDSEHHPPSQ--LPKSPMLPLDAEGQENTVKTVGGGCGVLPDPVAGDGTTPFHWAVWGGHLPVCKLLYSYGADPCRSNSHG 1456
            L PGL   R GDL  LQ  V     W+     D++GS  L WAAGGGHL+V +YLI S GM                                 +QD + H                          V GG  V  D  A DGTTPFH AVW  H   C LL   GADP   NSHG
Sbjct:  264 LGPGLDECRCGDLLGLQAQVASG--WDCHTSRDRHGSSGLLWAAGGGHLDVVKYLIESLGMRP-------------------------------VQDIQAHRRGYDGXXXXXXXXXXXXXXXXXXXVVHGGQSV--DTPAVDGTTPFHLAVWQNHQRTCALLLQLGADPHVVNSHG 404          
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Match: A0A7S2DLB6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DLB6_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 8.060e-11
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 2
Query:  941 PGLIAARDGDLEALQCLVEGPDKWNPCLELDKYGSGALEWAAGGGHLEVCRYLIFSCGMEA 1123
            PGL AAR GDL +LQ LV G   W+P    DK+GS +L WAAG GHL+VC+YL+ +C + A
Sbjct:   13 PGLEAARSGDLASLQALVIGG--WDPHRATDKHGSNSLMWAAGEGHLQVCQYLVNTCKVPA 71          
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Match: A0A813FNY0_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FNY0_POLGL)

HSP 1 Score: 75.1 bits (183), Expect = 8.170e-11
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  935 LSPGLIAARDGDLEALQCLVEGPDKWNPCLELDKYGSGALEWAAGGGHLEVCRYLIFSCGMEAARAN 1135
            L PG+ AARDGDL+ L+ LV+G  +W+P    D +G+G L WAAG GH+ VCR+L+   G++ +R N
Sbjct:  130 LDPGIRAARDGDLDELKRLVQG-GRWHPLTAADHHGNGPLHWAAGSGHVAVCRWLVEEAGVDPSRQN 195          
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Match: A0A024UDI9_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UDI9_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.060e-10
Identity = 91/298 (30.54%), Postives = 123/298 (41.28%), Query Frame = 2
Query:  602 VMAATGESASDNKVTDNSSPCPLCARPCAAGRGLRMHII------------DAHSADLQSRDHLLSLLTSSNRPSSPKETMPFSRPEPRSIITPQIPGCSIQQAWRFASGGGSAKFEGVQGSALSPGLIAARDGDLEALQCLVEGPDKWNPCLELDKYGSGALEWAAGGGHLEVCRYLIFSCGMEAARANPRRGRAKLRTPLHXXXXXXXXXXXXXXIQDSEHHPPSQLPKSPMLPLDAEGQENTVKTVGGGCGVLPDPVAGDGTTPFHWAVWGGHLPVCKLLYSYGADPCRS-NSHG 1456
            V+  T     +   T    PC +C +     +G+R+H +            +A + DLQ   +   L+  S   +S     P S P   S+  P           R ++                PG++AA+ G L  L+ LVE    WNP  E D  G  AL WAAG GH+++C YL+ +CG++A     +R     R+PLHXXXXXXXXXXXXXX         S        P D                        DGTT FH+AVW   L  C  L + G     S NS+G
Sbjct:  128 VLTFTSHRHLEWHATHGRLPCSMCGKFFKGPKGIRVHQMLHHDSSFASAQGEALATDLQIVVYTAPLVVPSRDSASSTSPSPTSHPPVPSVPAPIA---------RISN----------------PGILAAQGGHLSTLKQLVEQRG-WNPLSE-DHNGCNALVWAAGAGHVDICEYLVTTCGLDARALQGKRDMR--RSPLHXXXXXXXXXXXXXXXXXXXXDVDS--------PTD------------------------DGTTAFHYAVWNAQLATCVWLVTTGQCNVHSINSYG 364          
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Match: A0A448Z0L5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z0L5_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.030e-10
Identity = 70/194 (36.08%), Postives = 93/194 (47.94%), Query Frame = 2
Query:  899 GSAKFEGV--QGSALSPGLIAARDGDLEALQCLVEGPDKWNPCLELDKYGSGALEWAAGGGHLEVCRYLIFSCGMEAARANPRR----GRAKLRTPLHXXXXXXXXXXXXXXIQDSEHHPPSQLPKSPMLPLDA--EGQENTVKTVGGGCGVLPDPVAGDGTTPFHWAVWGGHLPVCKLLYSYGADPCRSNSHG 1456
            GS+  +GV   GS   P +   R+G+LE L+  VE    + P    D+ GS  L WAAGGGHL++ RYL+  CG +  ++   +    GR        XXXXXXXXXX       S                    +G E + ++V    G L +   GDGTT F WA W  HLPV + LY +G D    NS+G
Sbjct:  294 GSSDGKGVVRSGSGKDP-IDHVREGNLEGLKNAVENHG-YRPSRVFDEKGSTPLLWAAGGGHLDITRYLVEVCGCDPCQSQRGKRSFWGRXXXXXXXXXXXXXXXXXXLSLATGGSNDDDGGNCXXXXXXXXXXXXDGPERSPRSVP--LGXLLEAKTGDGTTAFGWACWQRHLPVMECLYGHGCDIHGRNSYG 483          
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Match: A0A812S2I1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812S2I1_9DINO)

HSP 1 Score: 70.9 bits (172), Expect = 3.250e-10
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 2
Query:  923 QGSALSPGLIAARDGDLEALQCLVEGPDKWNPCLELDKYGSGALEWAAGGGHLEVCRYLIFSCGMEA 1123
            + S++ PGL AA+ GDL ALQ LVE    W+     D  G+GAL WAAGGGH+EVC YL+   GM+A
Sbjct:  109 ESSSIDPGLDAAQRGDLLALQALVERG--WDANKATDHRGNGALHWAAGGGHVEVCEYLLRELGMDA 173          
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Match: A0A7S4VCC4_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4VCC4_9DINO)

HSP 1 Score: 72.0 bits (175), Expect = 3.410e-10
Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 2
Query:  935 LSPGLIAARDGDLEALQCLVEGPDKWNPCLELDKYGSGALEWAAGGGHLEVCRYLIFSCGMEAAR 1129
            L  G+ AARDG LE L+CLV+   +W P    D  G+G L WAAG GHL+VCR+L+   G++ AR
Sbjct:  200 LDLGMQAARDGQLEVLRCLVQ-TGRWRPLTACDHRGNGPLHWAAGAGHLDVCRWLVEETGLDPAR 263          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10881.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9I0_ECTSI2.440e-7940.46C2H2 zinc finger, ankyrin repeat protein n=1 Tax=E... [more]
A0A6H5K2T6_9PHAE2.110e-7138.11C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A024T8V0_9STRA2.590e-1233.91Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
W4FBF0_9STRA3.420e-1235.23P4Hc domain-containing protein n=2 Tax=Aphanomyces... [more]
A0A7S2DLB6_9STRA8.060e-1155.74Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A813FNY0_POLGL8.170e-1149.25Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A024UDI9_9STRA1.060e-1030.54C2H2-type domain-containing protein n=1 Tax=Aphano... [more]
A0A448Z0L5_9STRA3.030e-1036.08Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A812S2I1_9DINO3.250e-1053.73Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A7S4VCC4_9DINO3.410e-1050.77Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10881contigC-tenellus_contig10881:2683..5425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G9I0
PFAMsAnk_2
Model size1711
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue2.56e-46
EggNOG OGsCOG5273@1|root,KOG0509@2759|Eukaryota
Descriptionprotein-cysteine S-palmitoyltransferase activity
Cds size1107
COG categoryZ
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10881.1.1prot_C-tenellus_contig10881.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10881 3408..5425 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789152.996092-UTR-C-tenellus_contig10881:2682..32191680789152.996092-UTR-C-tenellus_contig10881:2682..3219Choristocarpus tenellus KU2346UTRC-tenellus_contig10881 2683..3219 +
1680789153.006314-UTR-C-tenellus_contig10881:3340..34071680789153.006314-UTR-C-tenellus_contig10881:3340..3407Choristocarpus tenellus KU2346UTRC-tenellus_contig10881 3341..3407 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789153.0187063-CDS-C-tenellus_contig10881:3407..36781680789153.0187063-CDS-C-tenellus_contig10881:3407..3678Choristocarpus tenellus KU2346CDSC-tenellus_contig10881 3408..3678 +
1680789153.0331352-CDS-C-tenellus_contig10881:3780..39971680789153.0331352-CDS-C-tenellus_contig10881:3780..3997Choristocarpus tenellus KU2346CDSC-tenellus_contig10881 3781..3997 +
1680789153.0432587-CDS-C-tenellus_contig10881:4680..48971680789153.0432587-CDS-C-tenellus_contig10881:4680..4897Choristocarpus tenellus KU2346CDSC-tenellus_contig10881 4681..4897 +
1680789153.0516884-CDS-C-tenellus_contig10881:4951..51911680789153.0516884-CDS-C-tenellus_contig10881:4951..5191Choristocarpus tenellus KU2346CDSC-tenellus_contig10881 4952..5191 +
1680789153.0605898-CDS-C-tenellus_contig10881:5263..54251680789153.0605898-CDS-C-tenellus_contig10881:5263..5425Choristocarpus tenellus KU2346CDSC-tenellus_contig10881 5264..5425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10881.1.1

>prot_C-tenellus_contig10881.1.1 ID=prot_C-tenellus_contig10881.1.1|Name=mRNA_C-tenellus_contig10881.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=369bp
MAATGESASDNKVTDNSSPCPLCARPCAAGRGLRMHIIDAHSADLQSRDH
LLSLLTSSNRPSSPKETMPFSRPEPRSIITPQIPGCSIQQAWRFASGGGS
AKFEGVQGSALSPGLIAARDGDLEALQCLVEGPDKWNPCLELDKYGSGAL
EWAAGGGHLEVCRYLIFSCGMEAARANPRRGRAKLRTPLHWAARGGHEMV
CQFLIQDSEHHPPSQLPKSPMLPLDAEGQENTVKTVGGGCGVLPDPVAGD
GTTPFHWAVWGGHLPVCKLLYSYGADPCRSNSHGCTSVHWAALSGNVVLC
RWLNTLKCKSGGRGAGGLDWGKANLQGHTACHKAALKGQAGVLKWLLRES
GVAAEAWGCDQGGYRPADV
back to top

mRNA from alignment at C-tenellus_contig10881:2683..5425+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10881.1.1 ID=mRNA_C-tenellus_contig10881.1.1|Name=mRNA_C-tenellus_contig10881.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2743bp|location=Sequence derived from alignment at C-tenellus_contig10881:2683..5425+ (Choristocarpus tenellus KU2346)
AAACTGCACAACTCGGACCCGTGAAGCCATTGCCTCGTTTTCGTCGACTT CGAGATCCTAATCTCGTCACACGTCATATTGCAGGTCAGACTTGATGTCC AGTCTACTTTGAAATACGTCGAGATACGGATATTGAGTTGCTCAAGCCTG GCACAGGCCGTTCTAAGTGATTGTAATTGCCCTTTTGCTCGGACCTTGAT CAACAAATGCTTCGTCAATTCCTGGTTCCTGTGCAGTATATAATGCTGGT CCTGCTGTCGGTATTGGAATTGAGACCCTGAGACGAGTCTTTCTGGTCTA CGGTGCAATAGAGGACGTTGTTTGTCCAGTTCCCACCAGGCCTACTGTCT ACATCTCCTACGTTGATGCATCAGCGGCAGCATTGGCGAGGCGAAGTCGC AATCGGCCAGCCGACATCGAACAGCGAATCAGAGGAGGGGATTCGAAGGC TGCTACGGCCAGTGATGTATTTTCGCCTTCGCCAGACAAGGCATGCCCAC TCCTTGGGCGATGGCTGAAGGTGGATTTCGTGGACAGGTTTGAAACTGAT TGCCAACTTACGAACGTTTCCCAGATGTCAATGTAAAACCAAACAGACAC AGATCAATACTAACCAATATGTAATCCCCCTCTTCTTGTACCCGTTACAT AAACCCAGGCGTGTGGATTGCCCCTCTCGCTCCGATCACGAGAGTGGTCA TCTTACTCTACTTCCCTTCGATGTTATGGCAGCGACTGGGGAGAGCGCCT CAGACAATAAGGTCACCGACAACTCCTCGCCCTGCCCCCTTTGCGCACGT CCCTGCGCAGCTGGGCGAGGCCTCCGGATGCACATCATCGACGCTCACTC TGCCGATCTTCAGAGTCGCGATCATCTCCTTTCTTTACTGACATCCAGTA ATCGCCCCTCCAGCCCCAAGGAGACCATGCCTTTTTCACGACCGGAGCCC AGGTCAATCATAACACCCCAAATACCAGGGTGTAGCATCCAGCAAGGTAT GACCCTCAACACGAAGTCTCCAAATGCAAACGCTATTCCTCAAATATTGG AGGACACAAATCAAGCCCAGGTTCCAAGAGCTGTGGCTGCTGCCCCAGCC TGGCGTTTTGCCAGTGGTGGAGGTAGTGCGAAATTTGAAGGGGTACAGGG TAGTGCACTTTCCCCAGGCTTAATTGCAGCGAGGGATGGCGACCTGGAAG CTCTTCAATGCTTGGTGGAGGGTCCAGATAAGTGGAATCCCTGCCTGGAG CTTGACAAGTATGGGTCTGGGGCCCTCGAGTGGGCTGCAGGGGGAGGGCA CCTAGAAGTGTGCAGGTATGATTCTTTGTTTAAGGTGCACATTGAAGGTT AGATGCACTTTGAGAATGATGACTAGAGCTTTGGTTGGGAAACAATATGC TGATGTGTAACGGAAGCTGAACCTTTCATGGTTCAACCACTACTTCAAGT TATCTCTTTTTTTGGCAGCAGTTTTTGTTTGGAGCAGGTTGCTGTCCTAG CCTTGGTTTTCCCCTTTCATCATGTGGAGTGGAGTGTCAGGGTGTCCTGT TTAATCGCTTGCCTAGTTGGCAAGCAATACTTTTCACACTAATGCTATGC TCCCATGAGGGCATTGTAGTAACTTTAAACTCTGTTCTGGTTAATGAGCA ACCCTCGTGAAGCCCCAAACTTTTGACCCAAATTGCTTGTAGGTGAACGT ATGGGGTAGTTTGTAGAGGGAACATACTTGACATGGTACTCCTAGGTCTG TTTTACTCTGGGGTCATTTTGCTGTGTCTCATGTTTCCGGGTGATTCACA ACAATCTCTCTGACCTGAACATATTTATGTCTCAACTCCTGCTCTTGACC CTTCAAGCCTAAGCATGTTACGGGAAAAATTGCAATTCAACAAGGCACCC CAGAGAGAGGGACATGCAAAACCCTCTCTATACCAGTCCATCTCACCCAC AATCTGCCTCTGTGCCTCAACACTGCCTATATAATTATTTTAAACCAGGT ACCTCATATTTTCATGTGGGATGGAAGCAGCAAGAGCCAACCCCAGACGT GGGAGGGCAAAACTAAGGACCCCCCTTCATTGGGCAGCAAGGGGGGGACA TGAAATGGTCTGCCAGTTCTTGATTCAAGACTCTGAGCACCACCCTCCAT CACAGTTGCCTAAATCTCCGATGCTCCCTTTAGATGCAGAGGGACAAGAA AATACTGTGAAGACAGTGGCAGAGGAAGTAGGGAAACGCCCAAGAGCAGA TGACAAACCATGGAGAGAGGTAGGGGGAGGTTGTGGTGTTTTGCCAGACC CTGTGGCAGGTGATGGAACCACTCCCTTTCATTGGGCAGTCTGGGGGGGG CATTTGCCTGTCTGCAAGCTACTGTACAGTTATGGAGCTGATCCATGTAG GTCAAATAGTCACGGCTGCACATCCGTACACTGGGCTGCTCTTTCTGGCA ATGTTGTACTCTGCCGGTGGCTGAATACGCTGAAATGTAAGTCAGGGGGG AGAGGGGCTGTACTTCCTCTTGATGATGGACAGATGGGTTCTGTACGGGG AGCAAGAGAAAATTTTAAACAAGACCACAAGGGTGGGCTAGACTGGGGCA AGGCAAACTTGCAGGGACATACAGCATGTCACAAGGCAGCGCTGAAAGGT CAGGCTGGTGTTCTGAAATGGCTTCTAAGGGAGTCGGGTGTGGCAGCTGA GGCATGGGGGTGTGACCAAGGGGGATATCGGCCAGCAGATGTT
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig10881:2683..5425+

>mRNA_C-tenellus_contig10881.1.1 ID=mRNA_C-tenellus_contig10881.1.1|Name=mRNA_C-tenellus_contig10881.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1107bp|location=Sequence derived from alignment at C-tenellus_contig10881:2683..5425+ (Choristocarpus tenellus KU2346)
ATGGCAGCGACTGGGGAGAGCGCCTCAGACAATAAGGTCACCGACAACTC
CTCGCCCTGCCCCCTTTGCGCACGTCCCTGCGCAGCTGGGCGAGGCCTCC
GGATGCACATCATCGACGCTCACTCTGCCGATCTTCAGAGTCGCGATCAT
CTCCTTTCTTTACTGACATCCAGTAATCGCCCCTCCAGCCCCAAGGAGAC
CATGCCTTTTTCACGACCGGAGCCCAGGTCAATCATAACACCCCAAATAC
CAGGGTGTAGCATCCAGCAAGCCTGGCGTTTTGCCAGTGGTGGAGGTAGT
GCGAAATTTGAAGGGGTACAGGGTAGTGCACTTTCCCCAGGCTTAATTGC
AGCGAGGGATGGCGACCTGGAAGCTCTTCAATGCTTGGTGGAGGGTCCAG
ATAAGTGGAATCCCTGCCTGGAGCTTGACAAGTATGGGTCTGGGGCCCTC
GAGTGGGCTGCAGGGGGAGGGCACCTAGAAGTGTGCAGGTACCTCATATT
TTCATGTGGGATGGAAGCAGCAAGAGCCAACCCCAGACGTGGGAGGGCAA
AACTAAGGACCCCCCTTCATTGGGCAGCAAGGGGGGGACATGAAATGGTC
TGCCAGTTCTTGATTCAAGACTCTGAGCACCACCCTCCATCACAGTTGCC
TAAATCTCCGATGCTCCCTTTAGATGCAGAGGGACAAGAAAATACTGTGA
AGACAGTAGGGGGAGGTTGTGGTGTTTTGCCAGACCCTGTGGCAGGTGAT
GGAACCACTCCCTTTCATTGGGCAGTCTGGGGGGGGCATTTGCCTGTCTG
CAAGCTACTGTACAGTTATGGAGCTGATCCATGTAGGTCAAATAGTCACG
GCTGCACATCCGTACACTGGGCTGCTCTTTCTGGCAATGTTGTACTCTGC
CGGTGGCTGAATACGCTGAAATGTAAGTCAGGGGGGAGAGGGGCTGGTGG
GCTAGACTGGGGCAAGGCAAACTTGCAGGGACATACAGCATGTCACAAGG
CAGCGCTGAAAGGTCAGGCTGGTGTTCTGAAATGGCTTCTAAGGGAGTCG
GGTGTGGCAGCTGAGGCATGGGGGTGTGACCAAGGGGGATATCGGCCAGC
AGATGTT
back to top