mRNA_C-tenellus_contig1088.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1088.2.1
Unique NamemRNA_C-tenellus_contig1088.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1088.2.1 vs. uniprot
Match: A0A394DAZ5_LUPAN (Kinesin motor domain-containing protein n=4 Tax=Lupinus TaxID=3869 RepID=A0A394DAZ5_LUPAN)

HSP 1 Score: 73.2 bits (178), Expect = 7.600e-14
Identity = 31/49 (63.27%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 GPYVSQACVYAEAVAPVVHKVLDGYNSTVFAYGQTGSGKTHTMEGGLGN 147
            GP   Q  +Y +A++P+VH+VLDG+N TVFAYGQTG+GKT+TMEGG+ N
Sbjct:  108 GPKSQQRSIYDQAISPIVHEVLDGFNCTVFAYGQTGTGKTYTMEGGMRN 156
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BLAST of mRNA_C-tenellus_contig1088.2.1 vs. uniprot
Match: UPI00142D3397 (kinesin-like protein KIN-5B isoform X2 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142D3397)

HSP 1 Score: 70.5 bits (171), Expect = 6.750e-13
Identity = 29/47 (61.70%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 GPYVSQACVYAEAVAPVVHKVLDGYNSTVFAYGQTGSGKTHTMEGGL 141
            GP   Q  +Y +A+AP+VH+VL+G++ TVFAYGQTG+GKT+TMEGG+
Sbjct:  101 GPKAQQRSIYDQAIAPIVHEVLEGFSCTVFAYGQTGTGKTYTMEGGM 147
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BLAST of mRNA_C-tenellus_contig1088.2.1 vs. uniprot
Match: UPI00053C45DC (kinesin-like protein KIN-5B n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C45DC)

HSP 1 Score: 70.5 bits (171), Expect = 6.760e-13
Identity = 28/47 (59.57%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 GPYVSQACVYAEAVAPVVHKVLDGYNSTVFAYGQTGSGKTHTMEGGL 141
            GP   Q  +Y +A+AP+VH++L+G++ TVFAYGQTG+GKT+TMEGG+
Sbjct:  102 GPKAQQRAIYDQAIAPIVHEILEGFSCTVFAYGQTGTGKTYTMEGGM 148
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BLAST of mRNA_C-tenellus_contig1088.2.1 vs. uniprot
Match: M4DL08_BRARP (Kinesin motor domain-containing protein n=15 Tax=Brassiceae TaxID=981071 RepID=M4DL08_BRARP)

HSP 1 Score: 70.5 bits (171), Expect = 6.760e-13
Identity = 29/47 (61.70%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 GPYVSQACVYAEAVAPVVHKVLDGYNSTVFAYGQTGSGKTHTMEGGL 141
            GP   Q  +Y +A+AP+VH+VL+G++ TVFAYGQTG+GKT+TMEGG+
Sbjct:  101 GPKAQQRSIYDQAIAPIVHEVLEGFSCTVFAYGQTGTGKTYTMEGGM 147
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BLAST of mRNA_C-tenellus_contig1088.2.1 vs. uniprot
Match: KN5B_ARATH (Kinesin-like protein KIN-5B n=8 Tax=Camelineae TaxID=980083 RepID=KN5B_ARATH)

HSP 1 Score: 69.7 bits (169), Expect = 1.260e-12
Identity = 29/47 (61.70%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 GPYVSQACVYAEAVAPVVHKVLDGYNSTVFAYGQTGSGKTHTMEGGL 141
            GP   Q  +Y +A+AP+VH+VL+G++ TVFAYGQTG+GKT+TMEGG+
Sbjct:  102 GPKSQQRSIYDQAIAPIVHEVLEGFSCTVFAYGQTGTGKTYTMEGGM 148
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BLAST of mRNA_C-tenellus_contig1088.2.1 vs. uniprot
Match: A0A4P1RPP6_LUPAN (Kinesin motor domain-containing protein n=4 Tax=Lupinus TaxID=3869 RepID=A0A4P1RPP6_LUPAN)

HSP 1 Score: 69.7 bits (169), Expect = 1.260e-12
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 GPYVSQACVYAEAVAPVVHKVLDGYNSTVFAYGQTGSGKTHTMEGGLG 144
            G    QA +Y EA++P+VH+VL+GYN TVFAYGQTG+GKT+TMEGG G
Sbjct:   99 GSTSQQAELYDEAISPIVHEVLEGYNCTVFAYGQTGTGKTYTMEGGGG 146
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BLAST of mRNA_C-tenellus_contig1088.2.1 vs. uniprot
Match: A0A835DBT1_9MAGN (Kinesin motor domain-containing protein n=2 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835DBT1_9MAGN)

HSP 1 Score: 69.3 bits (168), Expect = 1.720e-12
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 GPYVSQACVYAEAVAPVVHKVLDGYNSTVFAYGQTGSGKTHTMEGG 138
            GP   Q  +Y +AV+P+VH+VL+GYN T+FAYGQTG+GKT+TMEGG
Sbjct:  105 GPTSQQKDLYDQAVSPIVHEVLEGYNCTIFAYGQTGTGKTYTMEGG 150
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BLAST of mRNA_C-tenellus_contig1088.2.1 vs. uniprot
Match: A0A804JW14_MUSAM (Kinesin motor domain-containing protein n=3 Tax=Musa TaxID=4640 RepID=A0A804JW14_MUSAM)

HSP 1 Score: 67.4 bits (163), Expect = 8.220e-12
Identity = 28/46 (60.87%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 GPYVSQACVYAEAVAPVVHKVLDGYNSTVFAYGQTGSGKTHTMEGG 138
            GP   Q  ++ +A++P+VH+VL+GYN T+FAYGQTG+GKT+TMEGG
Sbjct:  102 GPTSKQKDLFDQAISPIVHEVLEGYNCTIFAYGQTGTGKTYTMEGG 147
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BLAST of mRNA_C-tenellus_contig1088.2.1 vs. uniprot
Match: UPI00057A0F23 (125 kDa kinesin-related protein-like n=1 Tax=Populus euphratica TaxID=75702 RepID=UPI00057A0F23)

HSP 1 Score: 66.6 bits (161), Expect = 1.530e-11
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 GPYVSQACVYAEAVAPVVHKVLDGYNSTVFAYGQTGSGKTHTMEG 135
            GP   Q  +Y +AV P+VH+VL+G+N T+FAYGQTG+GKT+TMEG
Sbjct:   66 GPSAQQRDLYEQAVVPIVHEVLEGFNCTIFAYGQTGTGKTYTMEG 110
[Close]
BLAST of mRNA_C-tenellus_contig1088.2.1 vs. uniprot
Match: A0A2K1R579_POPTR (Kinesin-like protein n=9 Tax=Saliceae TaxID=238069 RepID=A0A2K1R579_POPTR)

HSP 1 Score: 66.6 bits (161), Expect = 1.530e-11
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 GPYVSQACVYAEAVAPVVHKVLDGYNSTVFAYGQTGSGKTHTMEG 135
            GP   Q  +Y +AV P+VH+VL+G+N T+FAYGQTG+GKT+TMEG
Sbjct:   66 GPSAQQRDLYEQAVVPIVHEVLEGFNCTIFAYGQTGTGKTYTMEG 110
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1088.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A394DAZ5_LUPAN7.600e-1463.27Kinesin motor domain-containing protein n=4 Tax=Lu... [more]
UPI00142D33976.750e-1361.70kinesin-like protein KIN-5B isoform X2 n=1 Tax=Bra... [more]
UPI00053C45DC6.760e-1359.57kinesin-like protein KIN-5B n=1 Tax=Tarenaya hassl... [more]
M4DL08_BRARP6.760e-1361.70Kinesin motor domain-containing protein n=15 Tax=B... [more]
KN5B_ARATH1.260e-1261.70Kinesin-like protein KIN-5B n=8 Tax=Camelineae Tax... [more]
A0A4P1RPP6_LUPAN1.260e-1266.67Kinesin motor domain-containing protein n=4 Tax=Lu... [more]
A0A835DBT1_9MAGN1.720e-1265.22Kinesin motor domain-containing protein n=2 Tax=Te... [more]
A0A804JW14_MUSAM8.220e-1260.87Kinesin motor domain-containing protein n=3 Tax=Mu... [more]
UPI00057A0F231.530e-1162.22125 kDa kinesin-related protein-like n=1 Tax=Popul... [more]
A0A2K1R579_POPTR1.530e-1162.22Kinesin-like protein n=9 Tax=Saliceae TaxID=238069... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1088contigC-tenellus_contig1088:6091..6243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3656.XP_008447516.1
PFAMsKinesin
Model size153
Max annot lvl35493|Streptophyta
KEGG koko:K10398
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005871,GO:0005875,GO:0006928,GO:0007017,GO:0007018,GO:0008150,GO:0008574,GO:0009987,GO:0015630,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0042623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:1990939
Exons1
Evalue1.7e-14
EggNOG OGsCOG5059@1|root,KOG0243@2759|Eukaryota,37R7P@33090|Viridiplantae,3GEXS@35493|Streptophyta,4JD7Q@91835|fabids
DescriptionBelongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family
Cds size153
COG categoryZ
BRITEko00000,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789152.9559882-CDS-C-tenellus_contig1088:6090..62431680789152.9559882-CDS-C-tenellus_contig1088:6090..6243Choristocarpus tenellus KU2346CDSC-tenellus_contig1088 6091..6243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1088.2.1prot_C-tenellus_contig1088.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1088 6091..6243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1088.2.1

>prot_C-tenellus_contig1088.2.1 ID=prot_C-tenellus_contig1088.2.1|Name=mRNA_C-tenellus_contig1088.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=51bp
GPYVSQACVYAEAVAPVVHKVLDGYNSTVFAYGQTGSGKTHTMEGGLGNS
D
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mRNA from alignment at C-tenellus_contig1088:6091..6243+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1088.2.1 ID=mRNA_C-tenellus_contig1088.2.1|Name=mRNA_C-tenellus_contig1088.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=153bp|location=Sequence derived from alignment at C-tenellus_contig1088:6091..6243+ (Choristocarpus tenellus KU2346)
GGGCCCTATGTGAGCCAGGCATGCGTATATGCTGAAGCTGTTGCCCCAGT
GGTACATAAGGTGCTTGATGGATATAACTCCACGGTCTTTGCGTATGGAC
AGACTGGATCGGGAAAAACACACACCATGGAAGGCGGTCTTGGCAATTCT
GAT
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Coding sequence (CDS) from alignment at C-tenellus_contig1088:6091..6243+

>mRNA_C-tenellus_contig1088.2.1 ID=mRNA_C-tenellus_contig1088.2.1|Name=mRNA_C-tenellus_contig1088.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=153bp|location=Sequence derived from alignment at C-tenellus_contig1088:6091..6243+ (Choristocarpus tenellus KU2346)
GGGCCCTATGTGAGCCAGGCATGCGTATATGCTGAAGCTGTTGCCCCAGT
GGTACATAAGGTGCTTGATGGATATAACTCCACGGTCTTTGCGTATGGAC
AGACTGGATCGGGAAAAACACACACCATGGAAGGCGGTCTTGGCAATTCT
GAT
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