mRNA_C-tenellus_contig1088.1.1 (mRNA) Choristocarpus tenellus KU2346
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Overview
Homology
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Match: D7FQ30_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ30_ECTSI) HSP 1 Score: 175 bits (444), Expect = 7.560e-55 Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 1
Query: 1 MSNKQQHIFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAFEKAYGRGWNVVVGRSFGAYVTHEIKTYIYFTVVPGVYVLLWR 276
MSNK QHIFAEDM+D+MCQFALETSQEAFQLTI+KGQVFTTIA+ IRKAFEK+YGRGWNVVVGRSFGAYVTHEIKTY+YFTVVPGVYVLLWR
Sbjct: 1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 92
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Match: A0A6H5JF01_9PHAE (Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF01_9PHAE) HSP 1 Score: 173 bits (439), Expect = 1.400e-54 Identity = 83/92 (90.22%), Postives = 89/92 (96.74%), Query Frame = 1
Query: 1 MSNKQQHIFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAFEKAYGRGWNVVVGRSFGAYVTHEIKTYIYFTVVPGVYVLLWR 276
MSNK QHIFAEDM+D+MC FALETSQEAFQLTI+KGQVFTTIA+ IRKAFEK+YGRGWNVVVGRSFGAYVTHEIKTY+YFTVVPGVYVLLWR
Sbjct: 1 MSNKHQHIFAEDMSDEMCHFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 92
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Match: A0A836CC04_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC04_9STRA) HSP 1 Score: 167 bits (424), Expect = 1.870e-52 Identity = 76/92 (82.61%), Postives = 87/92 (94.57%), Query Frame = 1
Query: 1 MSNKQQHIFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAFEKAYGRGWNVVVGRSFGAYVTHEIKTYIYFTVVPGVYVLLWR 276
M+NK QHIFAEDMTDDMCQFAL+TS+EAF LTI+KGQVFT IA+YIR+ FEK YGRGWNVVVGR+FGAYVTHEIKTY+YFTV+PGVYVL+W+
Sbjct: 1 MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWK 92
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Match: A0A482S6R4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6R4_9ARCH) HSP 1 Score: 116 bits (291), Expect = 1.020e-31 Identity = 52/85 (61.18%), Postives = 70/85 (82.35%), Query Frame = 1
Query: 22 IFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAFEKAYGRGWNVVVGRSFGAYVTHEIKTYIYFTVVPGVYVLLWR 276
+FAEDM+++ + A++ +++AF LTI+ G V +TIA +IRK F++ + RGWN +VGRSFGAYVTHEIKTYIYFTV PG YVLLW+
Sbjct: 44 VFAEDMSEEWSKDAIKAARDAFALTIASGDVHSTIADFIRKKFDRDHERGWNCIVGRSFGAYVTHEIKTYIYFTVQPGTYVLLWK 128
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Match: A0A485KYL8_9STRA (Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KYL8_9STRA) HSP 1 Score: 115 bits (288), Expect = 1.180e-31 Identity = 51/85 (60.00%), Postives = 68/85 (80.00%), Query Frame = 1
Query: 22 IFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAFEKAYGRGWNVVVGRSFGAYVTHEIKTYIYFTVVPGVYVLLWR 276
+FAEDMTD M + + T+++AFQL ++ G+ F+TIA ++R+ EK YGRGWN +VG SFGAYVTHEIKTY+YF+V GV VL+WR
Sbjct: 13 VFAEDMTDVMLEKVVATAKDAFQLQVASGKTFSTIAEFVRRNMEKEYGRGWNCIVGLSFGAYVTHEIKTYVYFSVASGVSVLVWR 97
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Match: A0A0P1AY91_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY91_PLAHL) HSP 1 Score: 112 bits (280), Expect = 2.000e-30 Identity = 51/85 (60.00%), Postives = 66/85 (77.65%), Query Frame = 1
Query: 22 IFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAFEKAYGRGWNVVVGRSFGAYVTHEIKTYIYFTVVPGVYVLLWR 276
+FAEDMTD M L T+++AFQL ++ + F+TIA ++R+ EK YGRGWN VVG SFGAYVTHEIKTY+YF+V GV VL+W+
Sbjct: 14 VFAEDMTDAMLDKVLSTAKDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAIGVSVLVWK 98
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Match: A0A7S4E7C9_9STRA (Dynein light chain n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7C9_9STRA) HSP 1 Score: 112 bits (279), Expect = 4.400e-30 Identity = 51/92 (55.43%), Postives = 69/92 (75.00%), Query Frame = 1
Query: 1 MSNKQQHIFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAFEKAYGRGWNVVVGRSFGAYVTHEIKTYIYFTVVPGVYVLLWR 276
M+ Q +FAEDM+++ F LE + +AF +G+V++ +A +IR A EK YG+GWNVVVG+SFGA+VTHEIKTY Y +VVPGV VL+WR
Sbjct: 1 MAKATQQVFAEDMSEEKVDFCLEIATDAFNQASFQGKVYSYVANFIRAALEKQYGKGWNVVVGKSFGAFVTHEIKTYFYGSVVPGVCVLIWR 92
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Match: H3HCG0_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3HCG0_PHYRM) HSP 1 Score: 108 bits (271), Expect = 4.190e-29 Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 1
Query: 22 IFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAFEKAYGRGWNVVVGRSFGAYVTHEIKTYIYFTVVPGVYVL 267
+FAEDMTD M + AL T+++AFQL ++ + F+TIA ++R+ EK YGRGWN VVG SFGAYVTHEIKTY+YF+V GV VL
Sbjct: 14 VFAEDMTDAMLEKALGTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVL 95
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Match: A0A225VFG7_9STRA (Dynein light chain n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VFG7_9STRA) HSP 1 Score: 115 bits (287), Expect = 9.340e-29 Identity = 52/85 (61.18%), Postives = 68/85 (80.00%), Query Frame = 1
Query: 22 IFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAFEKAYGRGWNVVVGRSFGAYVTHEIKTYIYFTVVPGVYVLLWR 276
+FAEDMTD M + AL T+++AFQL ++ + F+TIA ++R+ EK YGRGWN VVG SFGAYVTHEIKTY+YF+V GV VL+W+
Sbjct: 14 VFAEDMTDVMLEKALSTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVLVWK 98
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Match: A0A7S3H299_9STRA (Dynein light chain n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H299_9STRA) HSP 1 Score: 108 bits (269), Expect = 1.590e-28 Identity = 49/85 (57.65%), Postives = 65/85 (76.47%), Query Frame = 1
Query: 22 IFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAFEKAYGRGWNVVVGRSFGAYVTHEIKTYIYFTVVPGVYVLLWR 276
+FAEDM+++ + A + +++AF +TIS G +TIA +IRK F+ + GWN +VGRSFGAYVTHEIKTY YF+V PG YVLLWR
Sbjct: 32 VFAEDMSEEWARDAQKIARDAFAITISSGDAHSTIADFIRKKFDVGHMAGWNCIVGRSFGAYVTHEIKTYTYFSVQPGTYVLLWR 116 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig1088.1.1 >prot_C-tenellus_contig1088.1.1 ID=prot_C-tenellus_contig1088.1.1|Name=mRNA_C-tenellus_contig1088.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=93bp MSNKQQHIFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAFback to top mRNA from alignment at C-tenellus_contig1088:929..1391- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig1088.1.1 ID=mRNA_C-tenellus_contig1088.1.1|Name=mRNA_C-tenellus_contig1088.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=463bp|location=Sequence derived from alignment at C-tenellus_contig1088:929..1391- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig1088:929..1391- >mRNA_C-tenellus_contig1088.1.1 ID=mRNA_C-tenellus_contig1088.1.1|Name=mRNA_C-tenellus_contig1088.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=279bp|location=Sequence derived from alignment at C-tenellus_contig1088:929..1391- (Choristocarpus tenellus KU2346)back to top |