mRNA_C-tenellus_contig1088.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1088.1.1
Unique NamemRNA_C-tenellus_contig1088.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Match: D7FQ30_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ30_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 7.560e-55
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 1
Query:    1 MSNKQQHIFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAFEKAYGRGWNVVVGRSFGAYVTHEIKTYIYFTVVPGVYVLLWR 276
            MSNK QHIFAEDM+D+MCQFALETSQEAFQLTI+KGQVFTTIA+ IRKAFEK+YGRGWNVVVGRSFGAYVTHEIKTY+YFTVVPGVYVLLWR
Sbjct:    1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 92          
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Match: A0A6H5JF01_9PHAE (Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF01_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 1.400e-54
Identity = 83/92 (90.22%), Postives = 89/92 (96.74%), Query Frame = 1
Query:    1 MSNKQQHIFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAFEKAYGRGWNVVVGRSFGAYVTHEIKTYIYFTVVPGVYVLLWR 276
            MSNK QHIFAEDM+D+MC FALETSQEAFQLTI+KGQVFTTIA+ IRKAFEK+YGRGWNVVVGRSFGAYVTHEIKTY+YFTVVPGVYVLLWR
Sbjct:    1 MSNKHQHIFAEDMSDEMCHFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 92          
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Match: A0A836CC04_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC04_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.870e-52
Identity = 76/92 (82.61%), Postives = 87/92 (94.57%), Query Frame = 1
Query:    1 MSNKQQHIFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAFEKAYGRGWNVVVGRSFGAYVTHEIKTYIYFTVVPGVYVLLWR 276
            M+NK QHIFAEDMTDDMCQFAL+TS+EAF LTI+KGQVFT IA+YIR+ FEK YGRGWNVVVGR+FGAYVTHEIKTY+YFTV+PGVYVL+W+
Sbjct:    1 MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWK 92          
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Match: A0A482S6R4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6R4_9ARCH)

HSP 1 Score: 116 bits (291), Expect = 1.020e-31
Identity = 52/85 (61.18%), Postives = 70/85 (82.35%), Query Frame = 1
Query:   22 IFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAFEKAYGRGWNVVVGRSFGAYVTHEIKTYIYFTVVPGVYVLLWR 276
            +FAEDM+++  + A++ +++AF LTI+ G V +TIA +IRK F++ + RGWN +VGRSFGAYVTHEIKTYIYFTV PG YVLLW+
Sbjct:   44 VFAEDMSEEWSKDAIKAARDAFALTIASGDVHSTIADFIRKKFDRDHERGWNCIVGRSFGAYVTHEIKTYIYFTVQPGTYVLLWK 128          
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Match: A0A485KYL8_9STRA (Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KYL8_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.180e-31
Identity = 51/85 (60.00%), Postives = 68/85 (80.00%), Query Frame = 1
Query:   22 IFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAFEKAYGRGWNVVVGRSFGAYVTHEIKTYIYFTVVPGVYVLLWR 276
            +FAEDMTD M +  + T+++AFQL ++ G+ F+TIA ++R+  EK YGRGWN +VG SFGAYVTHEIKTY+YF+V  GV VL+WR
Sbjct:   13 VFAEDMTDVMLEKVVATAKDAFQLQVASGKTFSTIAEFVRRNMEKEYGRGWNCIVGLSFGAYVTHEIKTYVYFSVASGVSVLVWR 97          
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Match: A0A0P1AY91_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY91_PLAHL)

HSP 1 Score: 112 bits (280), Expect = 2.000e-30
Identity = 51/85 (60.00%), Postives = 66/85 (77.65%), Query Frame = 1
Query:   22 IFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAFEKAYGRGWNVVVGRSFGAYVTHEIKTYIYFTVVPGVYVLLWR 276
            +FAEDMTD M    L T+++AFQL ++  + F+TIA ++R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF+V  GV VL+W+
Sbjct:   14 VFAEDMTDAMLDKVLSTAKDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAIGVSVLVWK 98          
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Match: A0A7S4E7C9_9STRA (Dynein light chain n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7C9_9STRA)

HSP 1 Score: 112 bits (279), Expect = 4.400e-30
Identity = 51/92 (55.43%), Postives = 69/92 (75.00%), Query Frame = 1
Query:    1 MSNKQQHIFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAFEKAYGRGWNVVVGRSFGAYVTHEIKTYIYFTVVPGVYVLLWR 276
            M+   Q +FAEDM+++   F LE + +AF     +G+V++ +A +IR A EK YG+GWNVVVG+SFGA+VTHEIKTY Y +VVPGV VL+WR
Sbjct:    1 MAKATQQVFAEDMSEEKVDFCLEIATDAFNQASFQGKVYSYVANFIRAALEKQYGKGWNVVVGKSFGAFVTHEIKTYFYGSVVPGVCVLIWR 92          
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Match: H3HCG0_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3HCG0_PHYRM)

HSP 1 Score: 108 bits (271), Expect = 4.190e-29
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   22 IFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAFEKAYGRGWNVVVGRSFGAYVTHEIKTYIYFTVVPGVYVL 267
            +FAEDMTD M + AL T+++AFQL ++  + F+TIA ++R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF+V  GV VL
Sbjct:   14 VFAEDMTDAMLEKALGTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVL 95          
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Match: A0A225VFG7_9STRA (Dynein light chain n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VFG7_9STRA)

HSP 1 Score: 115 bits (287), Expect = 9.340e-29
Identity = 52/85 (61.18%), Postives = 68/85 (80.00%), Query Frame = 1
Query:   22 IFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAFEKAYGRGWNVVVGRSFGAYVTHEIKTYIYFTVVPGVYVLLWR 276
            +FAEDMTD M + AL T+++AFQL ++  + F+TIA ++R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF+V  GV VL+W+
Sbjct:   14 VFAEDMTDVMLEKALSTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVLVWK 98          
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Match: A0A7S3H299_9STRA (Dynein light chain n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H299_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.590e-28
Identity = 49/85 (57.65%), Postives = 65/85 (76.47%), Query Frame = 1
Query:   22 IFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAFEKAYGRGWNVVVGRSFGAYVTHEIKTYIYFTVVPGVYVLLWR 276
            +FAEDM+++  + A + +++AF +TIS G   +TIA +IRK F+  +  GWN +VGRSFGAYVTHEIKTY YF+V PG YVLLWR
Sbjct:   32 VFAEDMSEEWARDAQKIARDAFAITISSGDAHSTIADFIRKKFDVGHMAGWNCIVGRSFGAYVTHEIKTYTYFSVQPGTYVLLWR 116          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1088.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ30_ECTSI7.560e-5591.30Dynein light chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JF01_9PHAE1.400e-5490.22Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A836CC04_9STRA1.870e-5282.61Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A482S6R4_9ARCH1.020e-3161.18Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A485KYL8_9STRA1.180e-3160.00Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4... [more]
A0A0P1AY91_PLAHL2.000e-3060.00Dynein light chain n=1 Tax=Plasmopara halstedii Ta... [more]
A0A7S4E7C9_9STRA4.400e-3055.43Dynein light chain n=1 Tax=Pelagomonas calceolata ... [more]
H3HCG0_PHYRM4.190e-2962.20Dynein light chain n=21 Tax=Oomycota TaxID=4762 Re... [more]
A0A225VFG7_9STRA9.340e-2961.18Dynein light chain n=1 Tax=Phytophthora megakarya ... [more]
A0A7S3H299_9STRA1.590e-2857.65Dynein light chain n=1 Tax=Spumella elongata TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1088contigC-tenellus_contig1088:929..1391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQ30
PFAMsDynein_light
Model size279
Max annot lvl2759|Eukaryota
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.24e-55
EggNOG OGsKOG3430@1|root,KOG3430@2759|Eukaryota
Ec32 ortholog descriptionDynein light chain
Ec32 orthologEc-01_007670.1
Descriptionpositive regulation of ATP-dependent microtubule motor activity, plus-end-directed
Cds size279
COG categoryS
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789152.901559-CDS-C-tenellus_contig1088:928..10961680789152.901559-CDS-C-tenellus_contig1088:928..1096Choristocarpus tenellus KU2346CDSC-tenellus_contig1088 929..1096 -
1680789152.9166684-CDS-C-tenellus_contig1088:1280..13911680789152.9166684-CDS-C-tenellus_contig1088:1280..1391Choristocarpus tenellus KU2346CDSC-tenellus_contig1088 1281..1391 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1088.1.1prot_C-tenellus_contig1088.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1088 929..1391 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1088.1.1

>prot_C-tenellus_contig1088.1.1 ID=prot_C-tenellus_contig1088.1.1|Name=mRNA_C-tenellus_contig1088.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=93bp
MSNKQQHIFAEDMTDDMCQFALETSQEAFQLTISKGQVFTTIATYIRKAF
EKAYGRGWNVVVGRSFGAYVTHEIKTYIYFTVVPGVYVLLWR*
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mRNA from alignment at C-tenellus_contig1088:929..1391-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1088.1.1 ID=mRNA_C-tenellus_contig1088.1.1|Name=mRNA_C-tenellus_contig1088.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=463bp|location=Sequence derived from alignment at C-tenellus_contig1088:929..1391- (Choristocarpus tenellus KU2346)
ATGTCTAACAAGCAACAGCATATCTTTGCGGAAGATATGACAGACGACAT GTGCCAATTTGCATTGGAGACGAGTCAAGAAGCGTTTCAGCTTACCATCA GCAAAGGGCAGGTGTGTCACAATGCAAGCAGTGGAGGCCTCCCACCCTGT TTACCCATTACAACTTCGACTCTAACCTGTGACGTTGTACATCCTAGCCC CGAAGCCCGGTCCACATGCAACCTCTTCAAAGTCACAACCACAATGTTAA CATCATAACTTACATTACCGACTAACGTGATTGCTGAAAGGGCAGGTCTT CACGACAATAGCAACCTATATTCGAAAGGCGTTTGAGAAGGCATATGGTC GAGGTTGGAATGTTGTCGTCGGTAGGAGCTTTGGGGCATATGTTACACAT GAGATCAAGACCTACATATATTTCACAGTCGTGCCCGGGGTGTATGTACT GCTTTGGAGGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig1088:929..1391-

>mRNA_C-tenellus_contig1088.1.1 ID=mRNA_C-tenellus_contig1088.1.1|Name=mRNA_C-tenellus_contig1088.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=279bp|location=Sequence derived from alignment at C-tenellus_contig1088:929..1391- (Choristocarpus tenellus KU2346)
ATGTCTAACAAGCAACAGCATATCTTTGCGGAAGATATGACAGACGACAT
GTGCCAATTTGCATTGGAGACGAGTCAAGAAGCGTTTCAGCTTACCATCA
GCAAAGGGCAGGTCTTCACGACAATAGCAACCTATATTCGAAAGGCGTTT
GAGAAGGCATATGGTCGAGGTTGGAATGTTGTCGTCGGTAGGAGCTTTGG
GGCATATGTTACACATGAGATCAAGACCTACATATATTTCACAGTCGTGC
CCGGGGTGTATGTACTGCTTTGGAGGTGA
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