mRNA_C-tenellus_contig10879.1.3 (mRNA) Choristocarpus tenellus KU2346
|
Overview
Homology
BLAST of mRNA_C-tenellus_contig10879.1.3 vs. uniprot
Match: D8LIG7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIG7_ECTSI) HSP 1 Score: 200 bits (509), Expect = 1.500e-52 Identity = 177/484 (36.57%), Postives = 225/484 (46.49%), Query Frame = 1
Query: 28 DDFLEIYYDVVVLSTGLSSSVVAAALAKAGKTVLHLDRHGHYGDECASFSFNQLLEWA-----------GSVTEEVDEAGDVGIKELCLDLEAIKA--DIALGYATNELKKQQELESEEQHQQERLIDGDGAQRVDREGNDEKGEDEGLGIETVPVQEGLQEQSCEGGGEEKGQGHEMGDEEGKGIVYEWKEHAVGEQGNTGEENFENDLGVEKVECQSDKQNEEARERKRRLDEATASYFSAFDNACLMELSPDPADVKVTGISNDCAQELKDQYGTNSSETGASGLVTTSYRRHPPSHPSWYGRRHACKLDRDTQESKREEEADSIHPAFHGYRIETSATRADLVQLSRSFSLDLTSQVILASGLGVDALVDSGVSRYLEFKDIEALFLASELKNGPGKGAPCPAGQAQVPGTLKVHRVPCSKADVFRTKMLTPLEKRKLMKFLQFASDRGVLRAGEDVFSRNERGLGQGRSLRRPQNREAA 1440
DD+LE YYD +VLSTGL SS++AAALAKAGK+VL+LD H +YG + ASFSF QLL+WA G V + + + + +++ A IA +A NELKK++E+++ G E N E+ + D G EK EEA A A+ N L+ LS + S+ C E +++ ASG R+ PSHP+W GRR + D EEE +HP+F GYR E ADLV+LSRSF+LDLTSQV+LA+G VDALV+SGV+ YLEFKD++A DVF TK+LTPLEKR+LMKFL FASD G+ R GEDV SRNE GLG+GRSLRRPQNREAA
Sbjct: 9 DDYLEDYYDAIVLSTGLGSSILAAALAKAGKSVLYLDCHEYYGQDSASFSFTQLLDWAEANGRKHHGGKGGVAGDGGQTCAISTNQAAKMVDSADAWTAIARAHARNELKKEREMKAT------------------------------AGGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQTEQ--QRDGGEEKEPTA-----EEAAXXXXXXXXAAAARLQTL-NLHLLPLSYHGCRTRAGAPSDACVPE-RERRKVAEDAAAASGRFLGG-RQPQPSHPAWAGRRDPT-MRGDGGAVGGEEEG--VHPSFWGYRTERRPGAADLVRLSRSFNLDLTSQVLLATGPAVDALVNSGVASYLEFKDMQA--------------------------------------DVFGTKLLTPLEKRRLMKFLLFASDWGLQRRGEDVLSRNEAGLGRGRSLRRPQNREAA 411
BLAST of mRNA_C-tenellus_contig10879.1.3 vs. uniprot
Match: A0A7S3YJR1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YJR1_HETAK) HSP 1 Score: 114 bits (286), Expect = 3.440e-26 Identity = 65/135 (48.15%), Postives = 86/135 (63.70%), Query Frame = 1
Query: 1036 SRSFSLDLTSQVILASGLGVDALVDSGVSRYLEFKDIEALFLASELKNGPGKGAPCPAGQAQVPGTLKVHRVPCSKADVFRTKMLTPLEKRKLMKFLQFASDRGVLRAGEDVFSRNERGLGQGRSLRRPQNREAA 1440
SR FSLDL+ ++ L +GL VD +V SG+ RY+EFK I+ LFL E G A T RVPC K DV ++KML+ +EKR LM+FLQ+ + G ++ GEDV ++NER LGQGR + RPQN+E A
Sbjct: 1 SRRFSLDLSPRLTLGAGLAVDTMVRSGIGRYMEFKSIDGLFLCKE------------EGDASSEETFS--RVPCLKGDVVKSKMLSVVEKRLLMRFLQYCMEWGQVQQGEDVTTQNERELGQGRMITRPQNKEQA 121
BLAST of mRNA_C-tenellus_contig10879.1.3 vs. uniprot
Match: H3GGP8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GGP8_PHYRM) HSP 1 Score: 107 bits (266), Expect = 6.660e-21 Identity = 65/152 (42.76%), Postives = 93/152 (61.18%), Query Frame = 1
Query: 994 RIETSATRADLVQLSRSFSLDLTSQVILASGLGVDALVDSGVSRYLEFKDIEALFLASELKNGPGKGAPCPAGQAQVPGTLKVHRVPCSKADVFRTKMLTPLEKRKLMKFLQFASDRGVLRA-GEDVFSRNERGLGQGRSLRRPQNREAAYD 1446
R AT+ +LV+ S SFS+D+ +++L+S V+ L+ SGV RYLEF IE ++ + P +G A+ V VPCSK DVF++K+L +EKR+LMKFLQF +D G EDV ++NER L GR+L+RPQN+ + D
Sbjct: 102 RFADEATKEELVRQSSSFSIDVNPRLMLSSEQLVEILITSGVGRYLEFAAIERTYVHLQ---------PSASGAAEAEDPDTVWEVPCSKKDVFQSKLLGMVEKRQLMKFLQFVADYGETHILHEDVKTKNERSLALGRALKRPQNKASQAD 244
BLAST of mRNA_C-tenellus_contig10879.1.3 vs. uniprot
Match: A0A3R7H2E3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H2E3_9STRA) HSP 1 Score: 106 bits (264), Expect = 1.260e-20 Identity = 66/147 (44.90%), Postives = 93/147 (63.27%), Query Frame = 1
Query: 1009 ATRADLVQLSRSFSLDLTSQVILASGLGVDALVDSGVSRYLEFKDIEALFLASELKNGPGKGAPCPAGQAQVPGTLKVHRVPCSKADVFRTKMLTPLEKRKLMKFLQFASDRGVLRA-GEDVFSRNERGLGQGRSLRRPQNREAAYD 1446
AT+ +L+ S SFS+D+ +++L+S V+ L+ SGV RYLEF IE ++ + + PGK A P T V VPCSK DVF++K+L +EKR+LMKFLQF +D G EDV ++NER L GR+L+RPQN+ + D
Sbjct: 115 ATKEELLSQSSSFSIDINPRLMLSSEQLVEILITSGVGRYLEFAAIERTYVHFQPPDAPGKVT---AKGVVEPDT--VWEVPCSKKDVFQSKLLGMVEKRQLMKFLQFVADYGETHILHEDVKTKNERTLALGRALKRPQNKASQVD 256
BLAST of mRNA_C-tenellus_contig10879.1.3 vs. uniprot
Match: A0A662XG14_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XG14_9STRA) HSP 1 Score: 104 bits (260), Expect = 2.760e-20 Identity = 63/142 (44.37%), Postives = 91/142 (64.08%), Query Frame = 1
Query: 1009 ATRADLVQLSRSFSLDLTSQVILASGLGVDALVDSGVSRYLEFKDIEALFLASELKNGPGKGAPCPAGQAQVPGTLKVHRVPCSKADVFRTKMLTPLEKRKLMKFLQFASDRGVLRA-GEDVFSRNERGLGQGRSLRRPQNR 1431
AT+ +L+Q S SFS+D++ +++L+S V+ L+ SGV RYLEF IE ++ +P PA + + V VPCSK DVF++K+L +EKR+LMKFLQF +D G EDV ++NER L GR+L+RPQN+
Sbjct: 91 ATKQELLQQSGSFSIDVSPRLMLSSEQLVELLISSGVGRYLEFAAIERTYVHLP--------SPAPASRKAEAESDTVWEVPCSKKDVFQSKLLGMVEKRQLMKFLQFVADYGETHILHEDVKTKNERSLALGRALKRPQNK 224
BLAST of mRNA_C-tenellus_contig10879.1.3 vs. uniprot
Match: A0A0W8C4L4_PHYNI (Rab escort protein 1 n=20 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C4L4_PHYNI) HSP 1 Score: 104 bits (259), Expect = 4.900e-20 Identity = 65/147 (44.22%), Postives = 91/147 (61.90%), Query Frame = 1
Query: 1009 ATRADLVQLSRSFSLDLTSQVILASGLGVDALVDSGVSRYLEFKDIEALFLASELKNGPGKGAPCPAGQAQVPGTLKVHRVPCSKADVFRTKMLTPLEKRKLMKFLQFASDRGVLRA-GEDVFSRNERGLGQGRSLRRPQNREAAYD 1446
AT+ +LVQ S SFS+D+ +++L+S V+ L+ SGV RYLEF IE ++ + P + P T V VPCSK DVF++K+L +EKR+LMKFLQF +D G EDV ++NER L GR+L+RPQN+ + D
Sbjct: 116 ATKEELVQKSSSFSIDVNPRLMLSSEQLVETLITSGVGRYLEFAAIERTYVHFQ-----------PTDNSTEPDT--VWEVPCSKKDVFQSKLLGMVEKRQLMKFLQFVADYGETHILHEDVKTKNERSLALGRALKRPQNKASQAD 249
BLAST of mRNA_C-tenellus_contig10879.1.3 vs. uniprot
Match: A0A329SF21_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SF21_9STRA) HSP 1 Score: 103 bits (257), Expect = 8.770e-20 Identity = 64/148 (43.24%), Postives = 91/148 (61.49%), Query Frame = 1
Query: 1009 ATRADLVQLSRSFSLDLTSQVILASGLGVDALVDSGVSRYLEFKDIEALFLASELKNGPGKGAPCPAGQAQVPGTLK-VHRVPCSKADVFRTKMLTPLEKRKLMKFLQFASDRGVLRA-GEDVFSRNERGLGQGRSLRRPQNREAAYD 1446
AT+ +L+Q S SFS+D+ +++L+S V+ L+ SGV RYLEF IE ++ + P+ GT V VPCSK DVF++K+L +EKR+LMKFLQF +D G EDV ++NER L GR+L+RPQN+ + D
Sbjct: 116 ATKEELLQKSSSFSIDVNPRLMLSSEQLVETLITSGVGRYLEFAAIERTYVHLQ-----------PSASGATTGTSDTVWEVPCSKKDVFQSKLLGMVEKRQLMKFLQFVADYGETHILHEDVKTKNERSLALGRALKRPQNKASQAD 252
BLAST of mRNA_C-tenellus_contig10879.1.3 vs. uniprot
Match: A0A3M6VF59_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VF59_9STRA) HSP 1 Score: 102 bits (255), Expect = 1.690e-19 Identity = 63/149 (42.28%), Postives = 95/149 (63.76%), Query Frame = 1
Query: 1012 TRADLVQLSRSFSLDLTSQVILASGLGVDALVDSGVSRYLEFKDIEALFLASELKNGPGKGAPCPAGQAQVPGTLK---VHRVPCSKADVFRTKMLTPLEKRKLMKFLQFASDRGVLRA-GEDVFSRNERGLGQGRSLRRPQNREAAYD 1446
T+ +L++ S SFS+D++ +++L+S V+ L+ SGV RYLEF IE ++ + P +G Q+ L+ V +VPCSK DVF++K+L +EKR+LMKFLQF +D G EDV ++NER L GR+L+RPQN+ + D
Sbjct: 118 TKEELLRQSSSFSIDVSPRLMLSSEQLVETLITSGVGRYLEFAAIERTYVHFQ---------PSASGATQMENDLEPDTVWKVPCSKKDVFQSKLLGMVEKRQLMKFLQFVADYGETHILHEDVKTKNERTLALGRALKRPQNKMSQVD 257
BLAST of mRNA_C-tenellus_contig10879.1.3 vs. uniprot
Match: A0A6A3NAC0_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NAC0_9STRA) HSP 1 Score: 102 bits (254), Expect = 2.170e-19 Identity = 64/147 (43.54%), Postives = 92/147 (62.59%), Query Frame = 1
Query: 1009 ATRADLVQLSRSFSLDLTSQVILASGLGVDALVDSGVSRYLEFKDIEALFLASELKNGPGKGAPCPAGQAQVPGTLKVHRVPCSKADVFRTKMLTPLEKRKLMKFLQFASDRGVLRA-GEDVFSRNERGLGQGRSLRRPQNREAAYD 1446
AT+ +L++ S SFS+D+ +++L+S V+ L+ SGV RYLEF IE ++ + K G+ P T V VPCSK DVF++K+L +EKR+LMKFLQF +D G EDV ++NER L GR+L+RPQN+ + D
Sbjct: 117 ATKEELLRQSSSFSIDVNPRLMLSSEQLVEILITSGVGRYLEFAAIERTYVHFQPAVSGAK-----TGETAEPDT--VWEVPCSKKDVFQSKLLGMVEKRQLMKFLQFVADYGETHILHEDVKTKNERTLALGRALKRPQNKASQAD 256
BLAST of mRNA_C-tenellus_contig10879.1.3 vs. uniprot
Match: D0NLA6_PHYIT (Rab proteins geranylgeranyltransferase component A, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NLA6_PHYIT) HSP 1 Score: 100 bits (249), Expect = 5.750e-19 Identity = 62/147 (42.18%), Postives = 88/147 (59.86%), Query Frame = 1
Query: 1009 ATRADLVQLSRSFSLDLTSQVILASGLGVDALVDSGVSRYLEFKDIEALFLASELKNGPGKGAPCPAGQAQVPGTLKVHRVPCSKADVFRTKMLTPLEKRKLMKFLQFASDRGVLRA-GEDVFSRNERGLGQGRSLRRPQNREAAYD 1446
AT+ +L+Q S FS+D+ +++L+S V+ L+ SGV RYLEF IE ++ + P T V VPCSK DVF++K+L +EKR+LMKFLQF +D G EDV ++NER L GR+L+RPQN+ + D
Sbjct: 116 ATKEELLQKSSHFSIDVNPRLMLSSEQLVETLITSGVGRYLEFAAIERTYVHFQPSTKPEGD------------TDTVWEVPCSKKDVFQSKLLGMVEKRQLMKFLQFVADYGETHILHEDVKTKNERSLALGRALKRPQNKASQAD 250 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10879.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10879.1.3 >prot_C-tenellus_contig10879.1.3 ID=prot_C-tenellus_contig10879.1.3|Name=mRNA_C-tenellus_contig10879.1.3|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=490bp MTRRKDRPKDDFLEIYYDVVVLSTGLSSSVVAAALAKAGKTVLHLDRHGHback to top mRNA from alignment at C-tenellus_contig10879:70..2230- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10879.1.3 ID=mRNA_C-tenellus_contig10879.1.3|Name=mRNA_C-tenellus_contig10879.1.3|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2161bp|location=Sequence derived from alignment at C-tenellus_contig10879:70..2230- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10879:70..2230- >mRNA_C-tenellus_contig10879.1.3 ID=mRNA_C-tenellus_contig10879.1.3|Name=mRNA_C-tenellus_contig10879.1.3|organism=Choristocarpus tenellus KU2346|type=CDS|length=1470bp|location=Sequence derived from alignment at C-tenellus_contig10879:70..2230- (Choristocarpus tenellus KU2346)back to top |