mRNA_C-tenellus_contig1083.2.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Match: A0A3M2H483_9PSED (DUF4347 domain-containing protein n=2 Tax=Pseudomonas sp. AOB-7 TaxID=2482750 RepID=A0A3M2H483_9PSED) HSP 1 Score: 58.5 bits (140), Expect = 1.010e-7 Identity = 40/101 (39.60%), Postives = 54/101 (53.47%), Query Frame = 1 Query: 10 DRFISSPGTG----LADQSSVSVDGAVPKPVSVSLVSNLTEDNRLYGLGEVLSLTLEFDKRVIVWGTPVLTLDLMESRE-ALYVAGNGSANLMFEYEVSLG 297 D +S P TG +A Q + VDG VP SVS+ + Y G+ L+ + + VIV GTP L +D+ S A YVAG+GSA L+F+Y V G Sbjct: 2758 DAILSLPATGSVDSIAGQHDIVVDGVVPTVASVSVPVGVQ-----YNAGDTLTFVVNVSETVIVNGTPRLAIDIGGSTVFADYVAGSGSATLVFQYSVRPG 2853
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Match: UPI001319D435 (Ig-like domain-containing protein n=1 Tax=Pseudoalteromonas sp. T1lg23B TaxID=2077097 RepID=UPI001319D435) HSP 1 Score: 58.2 bits (139), Expect = 1.380e-7 Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 1 Query: 64 VDGAVPKPVSVSLVSNLTEDNRLYGLGEVLSLTLEFDKRVIVWGTPVLTLDL-MESREALYVAGNGSANLMFEYEVSLG 297 +DG P SVS VS+ T N YG+G+V+++T+EF + V V GTP+LTL+ R A Y +G+G L F Y V G Sbjct: 741 IDGVAP---SVSSVSSSTA-NGSYGVGDVITVTIEFSEAVSVTGTPILTLETGTTDRTASYSSGSGGTTLSFAYTVQSG 815
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Match: UPI00187D6808 (DUF4347 domain-containing protein n=1 Tax=Candidatus Magnetaquicoccus inordinatus TaxID=2496818 RepID=UPI00187D6808) HSP 1 Score: 55.5 bits (132), Expect = 1.230e-6 Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 1 Query: 124 NRLYGLGEVLSLTLEFDKRVIVWGTPVLTLDLMES-REALYVAGNGSANLMFEYEVSLG 297 N YG G+ +++T++F+K VIV GTPVL LD+ + + A YV+G+G +L+F Y V G Sbjct: 797 NTAYGTGDTINVTVDFNKEVIVVGTPVLALDVGGNVKNATYVSGSGGRSLVFAYVVQAG 855
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Match: A0A7V0T7X1_9BACT (Ig-like_bact domain-containing protein (Fragment) n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A7V0T7X1_9BACT) HSP 1 Score: 55.1 bits (131), Expect = 1.630e-6 Identity = 34/90 (37.78%), Postives = 54/90 (60.00%), Query Frame = 1 Query: 31 GTGLADQSSVSVDGAVPKPVSVSLVSNLTEDNRLYGLGEVLSLTLEFDKRVIVWGTPVLTLDLME-SREALYVAGNGSANLMFEYEVSLG 297 G L+D ++ +D P +VS VS+ + N Y +G+++++T+EFD+ V V GTP+L L+ + R A Y AG+G+ L F Y V G Sbjct: 196 GNSLSDNKAIILDTTAP---TVSNVSS-SNANDTYKIGDLITITIEFDEVVHVTGTPILELETGDVDRSASYSAGSGTNTLSFTYTVQSG 281
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Match: UPI0011CE32E1 (DUF4347 domain-containing protein n=1 Tax=Marichromatium sp. AB31 TaxID=2483362 RepID=UPI0011CE32E1) HSP 1 Score: 52.4 bits (124), Expect = 1.420e-5 Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 1 Query: 34 TGLADQSSVSVDGAVPKPVSVSLVSNLTEDNRLYGLGEVLSLTLEFDKRVIVWGTPVLTLDLMES-REALYVAGNGSANLMFEYEVSLG 297 T +AD S+ ++D P +VS VS T N YG+GE +++ ++F + V V GTP LTL+ S R Y G+G+ L F Y + G Sbjct: 853 TIIADTSNATLDNQAP---TVSAVSATTA-NGTYGIGETITVQVQFSEAVTVTGTPQLTLETGASDRTVDYSGGSGTTTLSFAYTIQAG 937
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Match: UPI001CC1DF3F (cadherin repeat domain-containing protein n=2 Tax=unclassified Marichromatium TaxID=2618417 RepID=UPI001CC1DF3F) HSP 1 Score: 52.4 bits (124), Expect = 1.440e-5 Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 1 Query: 34 TGLADQSSVSVDGAVPKPVSVSLVSNLTEDNRLYGLGEVLSLTLEFDKRVIVWGTPVLTLDLMES-REALYVAGNGSANLMFEYEVSLG 297 T +AD S+ ++D P +VS VS T N YG+GE +++ ++F + V V GTP LTL+ S R Y G+G+ L F Y + G Sbjct: 536 TIIADTSNATLDNQAP---TVSAVSATTA-NGTYGIGETITVQVQFSEAVTVTGTPQLTLETGASDRTVDYSGGSGTTTLSFAYTIQAG 620
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Match: A0A4R4A418_MARGR (Cadherin domain-containing protein (Fragment) n=2 Tax=Marichromatium TaxID=85076 RepID=A0A4R4A418_MARGR) HSP 1 Score: 52.4 bits (124), Expect = 1.450e-5 Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 1 Query: 34 TGLADQSSVSVDGAVPKPVSVSLVSNLTEDNRLYGLGEVLSLTLEFDKRVIVWGTPVLTLDLMES-REALYVAGNGSANLMFEYEVSLG 297 T +AD S+ ++D P +VS VS T N YG+GE +++ ++F + V V GTP LTL+ S R Y G+G+ L F Y + G Sbjct: 853 TIIADTSNATLDNQAP---TVSAVSATTA-NGTYGIGETITVQVQFSEAVTVTGTPQLTLETGASDRTVDYSGGSGTTTLSFAYTIQAG 937
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Match: A0A023WXS3_PSEST (Uncharacterized protein n=3 Tax=Pseudomonas stutzeri TaxID=316 RepID=A0A023WXS3_PSEST) HSP 1 Score: 51.6 bits (122), Expect = 2.730e-5 Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 1 Query: 67 DGAVPKPVSVSLVSNLTEDNR--LYGLGEVLSLTLEFDKRVIVWGTPVLTLDLMESREAL-YVAGNGSANLMFEYEVSLG 297 D A+ P++ +V+N++ N Y +G+V+++T++FD V V GTP LTL+ + L YV+G+GS L F Y V G Sbjct: 1373 DLALITPIA-PVVTNVSSSNANGTYKIGDVITVTVQFDSAVDVTGTPTLTLETGSTDRVLDYVSGSGSNTLSFSYTVQAG 1451
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Match: UPI001B0DC8B6 (Cadherin repeat domain-containing protein n=2 Tax=unclassified Marichromatium TaxID=2618417 RepID=UPI001B0DC8B6) HSP 1 Score: 50.4 bits (119), Expect = 6.660e-5 Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = 1 Query: 34 TGLADQSSVSVDGAVPKPVSVSLVSNLTEDNRLYGLGEVLSLTLEFDKRVIVWGTPVLTLDLMES-REALYVAGNGSANLMFEYEV 288 T +AD S+ ++D P +VS VS T N YG+GE +++ ++F + V V GTP LTL+ S R Y G+G+ L F Y + Sbjct: 538 TIIADTSNATLDNQAP---TVSAVSATTA-NGTYGIGETITVQVQFSEAVTVTGTPQLTLETGASDRTVDYSGGSGTTTLSFAYTI 619
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Match: UPI00064578AC (Ig-like domain-containing protein n=1 Tax=Pseudomonas mendocina TaxID=300 RepID=UPI00064578AC) HSP 1 Score: 50.4 bits (119), Expect = 6.820e-5 Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 1 Query: 100 LVSNLTED--NRLYGLGEVLSLTLEFDKRVIVWGTPVLTLDLMESREAL-YVAGNGSANLMFEYEVSLG 297 +V+N+T N Y +G+V+++T++FD V V GTP LTL+ + L YV+G+G+ L F Y V G Sbjct: 123 VVTNITSSTANGTYKIGDVITVTVQFDTSVNVTGTPTLTLETGATDRILNYVSGSGTDTLSFSYTVQAG 191 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig1083.2.1 >prot_C-tenellus_contig1083.2.1 ID=prot_C-tenellus_contig1083.2.1|Name=mRNA_C-tenellus_contig1083.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=106bp MCCDRFISSPGTGLADQSSVSVDGAVPKPVSVSLVSNLTEDNRLYGLGEVback to top mRNA from alignment at C-tenellus_contig1083:9793..10110- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig1083.2.1 ID=mRNA_C-tenellus_contig1083.2.1|Name=mRNA_C-tenellus_contig1083.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=318bp|location=Sequence derived from alignment at C-tenellus_contig1083:9793..10110- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig1083:9793..10110- >mRNA_C-tenellus_contig1083.2.1 ID=mRNA_C-tenellus_contig1083.2.1|Name=mRNA_C-tenellus_contig1083.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=318bp|location=Sequence derived from alignment at C-tenellus_contig1083:9793..10110- (Choristocarpus tenellus KU2346)back to top |