mRNA_C-tenellus_contig1083.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1083.2.1
Unique NamemRNA_C-tenellus_contig1083.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Match: A0A3M2H483_9PSED (DUF4347 domain-containing protein n=2 Tax=Pseudomonas sp. AOB-7 TaxID=2482750 RepID=A0A3M2H483_9PSED)

HSP 1 Score: 58.5 bits (140), Expect = 1.010e-7
Identity = 40/101 (39.60%), Postives = 54/101 (53.47%), Query Frame = 1
Query:   10 DRFISSPGTG----LADQSSVSVDGAVPKPVSVSLVSNLTEDNRLYGLGEVLSLTLEFDKRVIVWGTPVLTLDLMESRE-ALYVAGNGSANLMFEYEVSLG 297
            D  +S P TG    +A Q  + VDG VP   SVS+   +      Y  G+ L+  +   + VIV GTP L +D+  S   A YVAG+GSA L+F+Y V  G
Sbjct: 2758 DAILSLPATGSVDSIAGQHDIVVDGVVPTVASVSVPVGVQ-----YNAGDTLTFVVNVSETVIVNGTPRLAIDIGGSTVFADYVAGSGSATLVFQYSVRPG 2853          
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Match: UPI001319D435 (Ig-like domain-containing protein n=1 Tax=Pseudoalteromonas sp. T1lg23B TaxID=2077097 RepID=UPI001319D435)

HSP 1 Score: 58.2 bits (139), Expect = 1.380e-7
Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 1
Query:   64 VDGAVPKPVSVSLVSNLTEDNRLYGLGEVLSLTLEFDKRVIVWGTPVLTLDL-MESREALYVAGNGSANLMFEYEVSLG 297
            +DG  P   SVS VS+ T  N  YG+G+V+++T+EF + V V GTP+LTL+     R A Y +G+G   L F Y V  G
Sbjct:  741 IDGVAP---SVSSVSSSTA-NGSYGVGDVITVTIEFSEAVSVTGTPILTLETGTTDRTASYSSGSGGTTLSFAYTVQSG 815          
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Match: UPI00187D6808 (DUF4347 domain-containing protein n=1 Tax=Candidatus Magnetaquicoccus inordinatus TaxID=2496818 RepID=UPI00187D6808)

HSP 1 Score: 55.5 bits (132), Expect = 1.230e-6
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  124 NRLYGLGEVLSLTLEFDKRVIVWGTPVLTLDLMES-REALYVAGNGSANLMFEYEVSLG 297
            N  YG G+ +++T++F+K VIV GTPVL LD+  + + A YV+G+G  +L+F Y V  G
Sbjct:  797 NTAYGTGDTINVTVDFNKEVIVVGTPVLALDVGGNVKNATYVSGSGGRSLVFAYVVQAG 855          
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Match: A0A7V0T7X1_9BACT (Ig-like_bact domain-containing protein (Fragment) n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A7V0T7X1_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.630e-6
Identity = 34/90 (37.78%), Postives = 54/90 (60.00%), Query Frame = 1
Query:   31 GTGLADQSSVSVDGAVPKPVSVSLVSNLTEDNRLYGLGEVLSLTLEFDKRVIVWGTPVLTLDLME-SREALYVAGNGSANLMFEYEVSLG 297
            G  L+D  ++ +D   P   +VS VS+ +  N  Y +G+++++T+EFD+ V V GTP+L L+  +  R A Y AG+G+  L F Y V  G
Sbjct:  196 GNSLSDNKAIILDTTAP---TVSNVSS-SNANDTYKIGDLITITIEFDEVVHVTGTPILELETGDVDRSASYSAGSGTNTLSFTYTVQSG 281          
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Match: UPI0011CE32E1 (DUF4347 domain-containing protein n=1 Tax=Marichromatium sp. AB31 TaxID=2483362 RepID=UPI0011CE32E1)

HSP 1 Score: 52.4 bits (124), Expect = 1.420e-5
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 1
Query:   34 TGLADQSSVSVDGAVPKPVSVSLVSNLTEDNRLYGLGEVLSLTLEFDKRVIVWGTPVLTLDLMES-REALYVAGNGSANLMFEYEVSLG 297
            T +AD S+ ++D   P   +VS VS  T  N  YG+GE +++ ++F + V V GTP LTL+   S R   Y  G+G+  L F Y +  G
Sbjct:  853 TIIADTSNATLDNQAP---TVSAVSATTA-NGTYGIGETITVQVQFSEAVTVTGTPQLTLETGASDRTVDYSGGSGTTTLSFAYTIQAG 937          
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Match: UPI001CC1DF3F (cadherin repeat domain-containing protein n=2 Tax=unclassified Marichromatium TaxID=2618417 RepID=UPI001CC1DF3F)

HSP 1 Score: 52.4 bits (124), Expect = 1.440e-5
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 1
Query:   34 TGLADQSSVSVDGAVPKPVSVSLVSNLTEDNRLYGLGEVLSLTLEFDKRVIVWGTPVLTLDLMES-REALYVAGNGSANLMFEYEVSLG 297
            T +AD S+ ++D   P   +VS VS  T  N  YG+GE +++ ++F + V V GTP LTL+   S R   Y  G+G+  L F Y +  G
Sbjct:  536 TIIADTSNATLDNQAP---TVSAVSATTA-NGTYGIGETITVQVQFSEAVTVTGTPQLTLETGASDRTVDYSGGSGTTTLSFAYTIQAG 620          
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Match: A0A4R4A418_MARGR (Cadherin domain-containing protein (Fragment) n=2 Tax=Marichromatium TaxID=85076 RepID=A0A4R4A418_MARGR)

HSP 1 Score: 52.4 bits (124), Expect = 1.450e-5
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 1
Query:   34 TGLADQSSVSVDGAVPKPVSVSLVSNLTEDNRLYGLGEVLSLTLEFDKRVIVWGTPVLTLDLMES-REALYVAGNGSANLMFEYEVSLG 297
            T +AD S+ ++D   P   +VS VS  T  N  YG+GE +++ ++F + V V GTP LTL+   S R   Y  G+G+  L F Y +  G
Sbjct:  853 TIIADTSNATLDNQAP---TVSAVSATTA-NGTYGIGETITVQVQFSEAVTVTGTPQLTLETGASDRTVDYSGGSGTTTLSFAYTIQAG 937          
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Match: A0A023WXS3_PSEST (Uncharacterized protein n=3 Tax=Pseudomonas stutzeri TaxID=316 RepID=A0A023WXS3_PSEST)

HSP 1 Score: 51.6 bits (122), Expect = 2.730e-5
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 1
Query:   67 DGAVPKPVSVSLVSNLTEDNR--LYGLGEVLSLTLEFDKRVIVWGTPVLTLDLMESREAL-YVAGNGSANLMFEYEVSLG 297
            D A+  P++  +V+N++  N    Y +G+V+++T++FD  V V GTP LTL+   +   L YV+G+GS  L F Y V  G
Sbjct: 1373 DLALITPIA-PVVTNVSSSNANGTYKIGDVITVTVQFDSAVDVTGTPTLTLETGSTDRVLDYVSGSGSNTLSFSYTVQAG 1451          
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Match: UPI001B0DC8B6 (Cadherin repeat domain-containing protein n=2 Tax=unclassified Marichromatium TaxID=2618417 RepID=UPI001B0DC8B6)

HSP 1 Score: 50.4 bits (119), Expect = 6.660e-5
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = 1
Query:   34 TGLADQSSVSVDGAVPKPVSVSLVSNLTEDNRLYGLGEVLSLTLEFDKRVIVWGTPVLTLDLMES-REALYVAGNGSANLMFEYEV 288
            T +AD S+ ++D   P   +VS VS  T  N  YG+GE +++ ++F + V V GTP LTL+   S R   Y  G+G+  L F Y +
Sbjct:  538 TIIADTSNATLDNQAP---TVSAVSATTA-NGTYGIGETITVQVQFSEAVTVTGTPQLTLETGASDRTVDYSGGSGTTTLSFAYTI 619          
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Match: UPI00064578AC (Ig-like domain-containing protein n=1 Tax=Pseudomonas mendocina TaxID=300 RepID=UPI00064578AC)

HSP 1 Score: 50.4 bits (119), Expect = 6.820e-5
Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 1
Query:  100 LVSNLTED--NRLYGLGEVLSLTLEFDKRVIVWGTPVLTLDLMESREAL-YVAGNGSANLMFEYEVSLG 297
            +V+N+T    N  Y +G+V+++T++FD  V V GTP LTL+   +   L YV+G+G+  L F Y V  G
Sbjct:  123 VVTNITSSTANGTYKIGDVITVTVQFDTSVNVTGTPTLTLETGATDRILNYVSGSGTDTLSFSYTVQAG 191          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1083.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A3M2H483_9PSED1.010e-739.60DUF4347 domain-containing protein n=2 Tax=Pseudomo... [more]
UPI001319D4351.380e-744.30Ig-like domain-containing protein n=1 Tax=Pseudoal... [more]
UPI00187D68081.230e-645.76DUF4347 domain-containing protein n=1 Tax=Candidat... [more]
A0A7V0T7X1_9BACT1.630e-637.78Ig-like_bact domain-containing protein (Fragment) ... [more]
UPI0011CE32E11.420e-538.20DUF4347 domain-containing protein n=1 Tax=Marichro... [more]
UPI001CC1DF3F1.440e-538.20cadherin repeat domain-containing protein n=2 Tax=... [more]
A0A4R4A418_MARGR1.450e-538.20Cadherin domain-containing protein (Fragment) n=2 ... [more]
A0A023WXS3_PSEST2.730e-538.75Uncharacterized protein n=3 Tax=Pseudomonas stutze... [more]
UPI001B0DC8B66.660e-538.37Cadherin repeat domain-containing protein n=2 Tax=... [more]
UPI00064578AC6.820e-540.58Ig-like domain-containing protein n=1 Tax=Pseudomo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1083contigC-tenellus_contig1083:9793..10110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJQ0
PFAMsCalx-beta,FG-GAP_2
Model size318
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.78e-14
EggNOG OGs28JEB@1|root,2QRTB@2759|Eukaryota
DescriptionFG-GAP repeat
Cds size318
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789150.8710644-CDS-C-tenellus_contig1083:9792..101101680789150.8710644-CDS-C-tenellus_contig1083:9792..10110Choristocarpus tenellus KU2346CDSC-tenellus_contig1083 9793..10110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1083.2.1prot_C-tenellus_contig1083.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1083 9793..10110 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1083.2.1

>prot_C-tenellus_contig1083.2.1 ID=prot_C-tenellus_contig1083.2.1|Name=mRNA_C-tenellus_contig1083.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=106bp
MCCDRFISSPGTGLADQSSVSVDGAVPKPVSVSLVSNLTEDNRLYGLGEV
LSLTLEFDKRVIVWGTPVLTLDLMESREALYVAGNGSANLMFEYEVSLGC
HRSCE*
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mRNA from alignment at C-tenellus_contig1083:9793..10110-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1083.2.1 ID=mRNA_C-tenellus_contig1083.2.1|Name=mRNA_C-tenellus_contig1083.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=318bp|location=Sequence derived from alignment at C-tenellus_contig1083:9793..10110- (Choristocarpus tenellus KU2346)
ATGTGCTGTGATCGTTTCATATCCTCACCAGGCACTGGCCTTGCCGACCA GTCCTCAGTCTCCGTTGATGGGGCGGTACCAAAGCCGGTTTCAGTATCCC TTGTTTCAAATCTGACTGAGGACAACCGCCTCTATGGTCTTGGTGAGGTG TTGTCACTAACATTGGAGTTTGATAAAAGAGTGATTGTGTGGGGCACTCC AGTCCTCACCTTGGATTTAATGGAATCCAGAGAGGCCCTGTATGTTGCTG GGAATGGATCTGCTAACCTCATGTTTGAGTATGAGGTGAGCTTAGGTTGT CATCGATCATGTGAATAA
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Coding sequence (CDS) from alignment at C-tenellus_contig1083:9793..10110-

>mRNA_C-tenellus_contig1083.2.1 ID=mRNA_C-tenellus_contig1083.2.1|Name=mRNA_C-tenellus_contig1083.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=318bp|location=Sequence derived from alignment at C-tenellus_contig1083:9793..10110- (Choristocarpus tenellus KU2346)
ATGTGCTGTGATCGTTTCATATCCTCACCAGGCACTGGCCTTGCCGACCA
GTCCTCAGTCTCCGTTGATGGGGCGGTACCAAAGCCGGTTTCAGTATCCC
TTGTTTCAAATCTGACTGAGGACAACCGCCTCTATGGTCTTGGTGAGGTG
TTGTCACTAACATTGGAGTTTGATAAAAGAGTGATTGTGTGGGGCACTCC
AGTCCTCACCTTGGATTTAATGGAATCCAGAGAGGCCCTGTATGTTGCTG
GGAATGGATCTGCTAACCTCATGTTTGAGTATGAGGTGAGCTTAGGTTGT
CATCGATCATGTGAATAA
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