mRNA_C-tenellus_contig10828.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10828.3.1
Unique NamemRNA_C-tenellus_contig10828.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10828.3.1 vs. uniprot
Match: D7FQZ3_ECTSI (Aminopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQZ3_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 2.870e-7
Identity = 32/48 (66.67%), Postives = 41/48 (85.42%), Query Frame = 2 
Query: 1073 KVASRMTTAFSSWRRFNEGRQAMMKEQLTRICNSSPSKNTLEVASRCL 1216
            +VASR+ T FSS+RRF+E RQ +M+EQL RI +SSPSK+T EVA+RCL
Sbjct: 1001 QVASRLATMFSSYRRFDEKRQGLMREQLARIRDSSPSKDTYEVATRCL 1048
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BLAST of mRNA_C-tenellus_contig10828.3.1 vs. uniprot
Match: A0A5K0Y946_9MAGN (DUF3458_C domain-containing protein (Fragment) n=24 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0Y946_9MAGN)

HSP 1 Score: 51.2 bits (121), Expect = 4.800e-5
Identity = 21/25 (84.00%), Postives = 22/25 (88.00%), Query Frame = 2 
Query:    8 FHAKDGSGYAFLGDTVLELDKLNPQ 82
            FHAKDGSGY FLGD V +LDKLNPQ
Sbjct:   15 FHAKDGSGYEFLGDIVTQLDKLNPQ 39
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BLAST of mRNA_C-tenellus_contig10828.3.1 vs. uniprot
Match: A0A0A9IU94_ARUDO (DUF3458_C domain-containing protein n=2 Tax=Arundo donax TaxID=35708 RepID=A0A0A9IU94_ARUDO)

HSP 1 Score: 52.8 bits (125), Expect = 5.670e-5
Identity = 21/26 (80.77%), Postives = 24/26 (92.31%), Query Frame = 2 
Query:    8 FHAKDGSGYAFLGDTVLELDKLNPQV 85
            FHAKDGSGY FLG+ VL+LDK+NPQV
Sbjct:   21 FHAKDGSGYKFLGEVVLQLDKINPQV 46
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10828.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQZ3_ECTSI2.870e-766.67Aminopeptidase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A5K0Y946_9MAGN4.800e-584.00DUF3458_C domain-containing protein (Fragment) n=2... [more]
A0A0A9IU94_ARUDO5.670e-580.77DUF3458_C domain-containing protein n=2 Tax=Arundo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10828contigC-tenellus_contig10828:2341..4661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQZ3
PFAMsDUF3458,DUF3458_C,Peptidase_M1
Model size2321
Max annot lvl2759|Eukaryota
KEGG rclassRC00096,RC00141
KEGG koko:K01256,ko:K13725
KEGG ReactionR00899,R04951
KEGG Pathwayko00480,ko01100,map00480,map01100
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008270,GO:0009056,GO:0009987,GO:0016787,GO:0019538,GO:0033218,GO:0034641,GO:0042277,GO:0043167,GO:0043169,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0070006,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Exons1
Evalue1.37e-09
EggNOG OGsCOG0308@1|root,KOG1046@2759|Eukaryota
EC3.4.11.2
Descriptionmetalloaminopeptidase activity
Cds size135
COG categoryE
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789150.752156-UTR-C-tenellus_contig10828:2340..34271680789150.752156-UTR-C-tenellus_contig10828:2340..3427Choristocarpus tenellus KU2346UTRC-tenellus_contig10828 2341..3427 +
1680789150.7741191-UTR-C-tenellus_contig10828:3562..46611680789150.7741191-UTR-C-tenellus_contig10828:3562..4661Choristocarpus tenellus KU2346UTRC-tenellus_contig10828 3563..4661 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789150.765375-CDS-C-tenellus_contig10828:3427..35621680789150.765375-CDS-C-tenellus_contig10828:3427..3562Choristocarpus tenellus KU2346CDSC-tenellus_contig10828 3428..3562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10828.3.1prot_C-tenellus_contig10828.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10828 3428..3562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10828.3.1

>prot_C-tenellus_contig10828.3.1 ID=prot_C-tenellus_contig10828.3.1|Name=mRNA_C-tenellus_contig10828.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=45bp
MTTAFSSWRRFNEGRQAMMKEQLTRICNSSPSKNTLEVASRCLA*
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mRNA from alignment at C-tenellus_contig10828:2341..4661+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10828.3.1 ID=mRNA_C-tenellus_contig10828.3.1|Name=mRNA_C-tenellus_contig10828.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2321bp|location=Sequence derived from alignment at C-tenellus_contig10828:2341..4661+ (Choristocarpus tenellus KU2346)
GGACAAGTTCCATGCCAAAGATGGTTCTGGGTACGCCTTCCTGGGTGACA
CAGTGCTGGAGCTTGACAAGCTGAACCCTCAGGTGTGAGCTCTGGGTGGG
AAAGGTGGTGGGATTTGATAACAGTATTGTGTGTGTGTGTGCTGATGTTC
CTGTCTAAACAGCATCGACCCAAGTATACTACAATGAAAATAGTTGAAGT
ATTTGTGTATTGTAGGAGGTTATCGCACACCTTTGTAGTTAAAGTACGTA
CCAATTTTGTTTTGTGTATTATGTTTGTCTGTGTGTGTGTTTTTTTTCTA
TTACATGTTGTGTGCTTTTGAGAAGAAGGGGTGTGCATGTAACTTGTCTG
TGTGATGATTGGTGTGCTGGTTAGTAGTTTTCCTTTCAAGTCAAGACTAG
TTGCCGTGTGTTGCTGTTTGGGCAAGTGTGAATGATATCTCTGATGGAAT
GGCAGTTACTCTAAGGAATGTGGACAGTGGAAAACAACGAGCATGGGGCA
TGCAGTCCAAGGAGGATGCAGAGGTGCTCCCTGGTACGCAGTTTTCCTAA
CATTATTACTAAATAGTGCATTGTGCTTCTGTGGAACTGAGGAGGGTGCC
TGCTTCCTCTTGCCTTGGTGTTTTAAGTGTTCTACGATGTGTTTGGATGG
TTTAGAGGTAATGTATGGGTTGAGAGTCAATGCTTCCGTGAGGGGGGAGG
TGTGTATTGGGCAATTTAAGTTCTAAGAAGGGTTTTCAACTGTTGTCTGA
AGTGAGATTAGAGATATTTGAAGAACAAAAAAGAAAAGAGCATCGATAAG
GACAACATCTGTAAGCTGAACGCTCTCACAAAGAGCGTCAAAACACACTC
AAATGGATTGATTCAGGAGCAGCAGGGCAATTGCTCCTTGAGGGTACACA
GTATGCATTGTAGCCAATTCCCAATCCCCACCATGCAGACAAAAATGCTC
TCGTCTCCCTTCTTGCCTAACTCCCTGTCTTTCCCCCCTGATCATACTGC
CTTCGCCTTCATCCCTGATGACCCTGTGTGTGTACAACTAATGTGTGTAC
AACTAATGTGTGTATTTTGTTGAAGGTTGCCTCTCGAATGACGACTGCTT
TCAGCTCATGGAGACGATTTAATGAGGGAAGGCAGGCCATGATGAAGGAG
CAACTGACACGCATCTGCAACTCCTCCCCCTCGAAGAACACCTTAGAAGT
GGCCTCCCGATGTCTTGCCTAAGAGACAGGGGATACCACCACCTGGGGAG
GATTAGACAGGAGAAATAGGTCTGCCTCGATGGACCAGTCGCCAGAGAGA
GAGAGACAGAGAGAGACAGTGTGAGGGAGAAAGTGGGACTGATCTAAATG
GGGCTCCTAGTTCATGCTCTGCGGTGCAAAGGGGTAGGGCTTGGGGAGTA
CTGCTAGGGTTTGGGAGGTAGAGAGCTGGGTTGGCAAGGGAGGACAATGA
GGCTGTTGTTGTAGTGGAAGATCAAGGTCAGACTTACACCTGAAGTAGGA
CTCTAGTACATTCCAGCTGATGGTTGCCATGAAGTATCAGACTAGATATT
GTTGGTATGACCAATTTTGATCAGTAAGCAATGACACAAGGAAGATCCGG
TACCATATCTTGATAACTATCAATCTGTCCAACCCGTTTCATGGATCCTC
CTGTTCCTGGGTTTGTGCCACTCTCCCTTGCTCCGGGCCACTATTTTTAT
AGTACATCATGTCCTGCAATGCCCACTCTTGCAGTGCTAGCGTATTTTGA
GATTTGCAGCACCTTGGACAGGTTCACGATCTGCGCAGCACAAACTGGCT
TCTTTTATGTTATGATAGGCAAGTAGTTAGGCTTTTGAGAAGTGTGACTT
TTGTTGCCTGAGGTAAGCTAAGAGTCTATTGACGGCTGTGTGTGTGTGAT
ACTGTCATCATTTGATGATGGTTCGCACAGAGCCTAAGAACAGGCACCAA
GGGCATTGTATGGCCTGAAAGCATGGCGATGGCCCTTAGGGAATCAAATG
TTATCAGTTCTCTTGCCCCTCATTTATATTTCTAACTTTCGGCACTCAAT
GGAAATCTACTACCTGTTGTCATTGTTTTGATGTTGGCTATTCCTTGCGG
TCAATGATTGCACAATGTTCTTGTTCCTAAATTAGAGTGCTCCGCCAAGA
CAGAACCTTGCCTTCACAGTCAATGCTGACAGTGGTCATACATATGGCTG
TCCCGAAGTATCCTGAGGATGTCCCTTTTTGGATGTGTATGGTGCATGAC
GATGACTGTGTGTAACAGATTACAGGCTGAAACTCTCTCAAGCTCTTCAA
ACAGCCTCAGCAAAATTGAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10828:2341..4661+

>mRNA_C-tenellus_contig10828.3.1 ID=mRNA_C-tenellus_contig10828.3.1|Name=mRNA_C-tenellus_contig10828.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=135bp|location=Sequence derived from alignment at C-tenellus_contig10828:2341..4661+ (Choristocarpus tenellus KU2346)
ATGACGACTGCTTTCAGCTCATGGAGACGATTTAATGAGGGAAGGCAGGC
CATGATGAAGGAGCAACTGACACGCATCTGCAACTCCTCCCCCTCGAAGA
ACACCTTAGAAGTGGCCTCCCGATGTCTTGCCTAA
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