mRNA_C-tenellus_contig10806.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-tenellus_contig10806.1.1
Unique Name	mRNA_C-tenellus_contig10806.1.1
Type	mRNA
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)

Homology

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BLAST of mRNA_C-tenellus_contig10806.1.1 vs. uniprot
Match: D8LEY0_ECTSI (Transmembrane 9 superfamily member n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY0_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 7.050e-19
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 1

Query:    1 QESYPYYRLPYCLPNPSSGEVVNKKKRAGLGEILAGNKLRSSGFDIKYKVSQPKTELCTADLQGDSVEMFKQAV 222
            QESYPYYRLP+C+P    G    +K+ +GLGE+LAGN+LR+SG D+K+KV  PKT LCT  L   S   F+ AV
Sbjct:   66 QESYPYYRLPFCVPGLVDG--TKQKRPSGLGELLAGNELRNSGMDVKFKVPLPKTALCTQLLDQTSAAQFRNAV 137

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BLAST of mRNA_C-tenellus_contig10806.1.1 vs. uniprot
Match: A0A6H5KXN7_9PHAE (Transmembrane 9 superfamily member n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN7_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.660e-18
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 1

Query:    1 QESYPYYRLPYCLPNPSSGEVVNKKKRAGLGEILAGNKLRSSGFDIKYKVSQPKTELCTADLQGDSVEMFKQAV 222
            QESYPYY LP+C+P+   G    +K+ +GLGE+LAGN+LR+SG D+K+KV  PKT LCT  L   S   F+ AV
Sbjct:   66 QESYPYYHLPFCVPDLVEG--TKQKRPSGLGELLAGNELRNSGMDVKFKVPLPKTALCTQLLDQTSAAQFRNAV 137

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BLAST of mRNA_C-tenellus_contig10806.1.1 vs. uniprot
Match: A0A835YQT7_9STRA (Transmembrane 9 superfamily member n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQT7_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 7.690e-17
Identity = 36/74 (48.65%), Postives = 53/74 (71.62%), Query Frame = 1

Query:    1 QESYPYYRLPYCLPNPSSGEVVNKKKRAGLGEILAGNKLRSSGFDIKYKVSQPKTELCTADLQGDSVEMFKQAV 222
            QE+YPYYRLP+C P+     V +K+KR G+GEILAGN LR SGF +++ V+QP+  +C   L   +++ F++AV
Sbjct:   48 QETYPYYRLPFCRPDMG---VESKRKRQGMGEILAGNDLRDSGFSLQFNVNQPRVPVCKVALDAATLKTFRRAV 118

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BLAST of mRNA_C-tenellus_contig10806.1.1 vs. uniprot
Match: A0A7S2Y1C0_9STRA (Transmembrane 9 superfamily member (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1C0_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 8.030e-13
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1

Query:    1 QESYPYYRLPYCLPNPSSGEVVNKKKRAGLGEILAGNKLRSSGFDIKYKVSQPKTELCTADLQGDSVEMFKQAVR 225
            QE+Y YY+LP+C P    G    +KKRAG+GEIL G++LR SG+DIK+     KT  C+  L+    E F++AV+
Sbjct:   76 QETYAYYKLPFCKPELGLG---TRKKRAGIGEILEGHELRHSGYDIKFAQDVDKTTYCSVGLKKAGKE-FQKAVQ 146

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BLAST of mRNA_C-tenellus_contig10806.1.1 vs. uniprot
Match: A0A7J6F6Y5_CANSA (Transmembrane 9 superfamily member n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6F6Y5_CANSA)

HSP 1 Score: 68.2 bits (165), Expect = 1.460e-11
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1

Query:    1 QESYPYYRLPYCLPNPSSGEVVNKKKRAGLGEILAGNKLRSSGFDIKYKVSQPKTELCTADLQGDSVEMFKQAVRST 231
            QE+Y YY LP+C P  SS       K  GLGE+L GN+L  SGF+IK++ +  KT +C  +L    V+ FK A+ ++
Sbjct:   52 QETYNYYSLPFCHPAGSSAA----HKWGGLGEVLGGNELIESGFEIKFQQNVEKTVICQLELDEAKVKQFKDAIENS 124

[Close]

BLAST of mRNA_C-tenellus_contig10806.1.1 vs. uniprot
Match: A0A7J6EHK0_CANSA (Transmembrane 9 superfamily member n=6 Tax=rosids TaxID=71275 RepID=A0A7J6EHK0_CANSA)

HSP 1 Score: 68.2 bits (165), Expect = 1.470e-11
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1

Query:    1 QESYPYYRLPYCLPNPSSGEVVNKKKRAGLGEILAGNKLRSSGFDIKYKVSQPKTELCTADLQGDSVEMFKQAVRST 231
            QE+Y YY LP+C P  SS       K  GLGE+L GN+L  SGF+IK++ +  KT +C  +L    V+ FK A+ ++
Sbjct:   52 QETYNYYSLPFCHPAGSSAA----HKWGGLGEVLGGNELIESGFEIKFQQNVEKTVICQLELDEAKVKQFKDAIENS 124

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BLAST of mRNA_C-tenellus_contig10806.1.1 vs. uniprot
Match: A0A7J6E1S1_CANSA (Transmembrane 9 superfamily member n=3 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6E1S1_CANSA)

HSP 1 Score: 68.2 bits (165), Expect = 1.500e-11
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1

Query:    1 QESYPYYRLPYCLPNPSSGEVVNKKKRAGLGEILAGNKLRSSGFDIKYKVSQPKTELCTADLQGDSVEMFKQAVRST 231
            QE+Y YY LP+C P  SS       K  GLGE+L GN+L  SGF+IK++ +  KT +C  +L    V+ FK A+ ++
Sbjct:   52 QETYNYYSLPFCHPAGSSAA----HKWGGLGEVLGGNELIESGFEIKFQQNVEKTVICQLELDEAKVKQFKDAIENS 124

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BLAST of mRNA_C-tenellus_contig10806.1.1 vs. uniprot
Match: A0A4Y7J2C0_PAPSO (Transmembrane 9 superfamily member n=1 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7J2C0_PAPSO)

HSP 1 Score: 65.5 bits (158), Expect = 1.290e-10
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1

Query:    1 QESYPYYRLPYCLPNPSSGEVVNKKKRAGLGEILAGNKLRSSGFDIKYKVSQPKTELCTADLQGDSVEMFKQAVRST 231
            QE+Y YY LP+C P P +       K  GLGE+L GN+L  S  +IKY+ +  ++ +C  +L    V+ FK A+ S+
Sbjct:   48 QETYNYYSLPFCQPQPGNAA----HKWGGLGEVLGGNELIDSQIEIKYQKNVDRSSICEINLDAPKVKEFKDAIESS 120

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BLAST of mRNA_C-tenellus_contig10806.1.1 vs. uniprot
Match: UPI000E6FE3FC (transmembrane 9 superfamily member 1-like isoform X2 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FE3FC)

HSP 1 Score: 65.5 bits (158), Expect = 1.300e-10
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1

Query:    1 QESYPYYRLPYCLPNPSSGEVVNKKKRAGLGEILAGNKLRSSGFDIKYKVSQPKTELCTADLQGDSVEMFKQAVRST 231
            QE+Y YY LP+C P P +       K  GLGE+L GN+L  S  +IKY+ +  ++ +C  +L    V+ FK A+ S+
Sbjct:   48 QETYNYYSLPFCQPQPGNAA----HKWGGLGEVLGGNELIDSQIEIKYQKNVDRSSICEINLDAPKVKEFKDAIESS 120

[Close]

BLAST of mRNA_C-tenellus_contig10806.1.1 vs. uniprot
Match: A0A4Y7JRU7_PAPSO (Transmembrane 9 superfamily member n=1 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JRU7_PAPSO)

HSP 1 Score: 65.5 bits (158), Expect = 1.310e-10
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1

Query:    1 QESYPYYRLPYCLPNPSSGEVVNKKKRAGLGEILAGNKLRSSGFDIKYKVSQPKTELCTADLQGDSVEMFKQAVRST 231
            QE+Y YY LP+C P P +       K  GLGE+L GN+L  S  +IKY+ +  ++ +C  +L    V+ FK A+ S+
Sbjct:   48 QETYNYYSLPFCQPQPGNAA----HKWGGLGEVLGGNELIDSQIEIKYQKNVDRSSICEINLDAPKVKEFKDAIESS 120

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig10806.1.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig10806.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LEY0_ECTSI	7.050e-19	55.41	Transmembrane 9 superfamily member n=1 Tax=Ectocar...	[more]
A0A6H5KXN7_9PHAE	4.660e-18	54.05	Transmembrane 9 superfamily member n=1 Tax=Ectocar...	[more]
A0A835YQT7_9STRA	7.690e-17	48.65	Transmembrane 9 superfamily member n=1 Tax=Tribone...	[more]
A0A7S2Y1C0_9STRA	8.030e-13	46.67	Transmembrane 9 superfamily member (Fragment) n=1 ...	[more]
A0A7J6F6Y5_CANSA	1.460e-11	42.86	Transmembrane 9 superfamily member n=1 Tax=Cannabi...	[more]
A0A7J6EHK0_CANSA	1.470e-11	42.86	Transmembrane 9 superfamily member n=6 Tax=rosids ...	[more]
A0A7J6E1S1_CANSA	1.500e-11	42.86	Transmembrane 9 superfamily member n=3 Tax=Cannabi...	[more]
A0A4Y7J2C0_PAPSO	1.290e-10	38.96	Transmembrane 9 superfamily member n=1 Tax=Papaver...	[more]
UPI000E6FE3FC	1.300e-10	38.96	transmembrane 9 superfamily member 1-like isoform ...	[more]
A0A4Y7JRU7_PAPSO	1.310e-10	38.96	Transmembrane 9 superfamily member n=1 Tax=Papaver...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig10806	contig	C-tenellus_contig10806:160..742 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Seed ortholog	2880.D8LEY0
Preferred name	TM9SF3
PFAMs	EMP70
Model size	240
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02639,ko:K17087
KEGG Pathway	ko00195,map00195
Hectar predicted targeting category	other localisation
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005795,GO:0005797,GO:0005801,GO:0005802,GO:0012505,GO:0016020,GO:0016021,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0097708,GO:0098791
Exons	2
Evalue	1.16e-19
EggNOG OGs	KOG1278@1\|root,KOG1277@2759\|Eukaryota
Ec32 ortholog description	Nonaspanin (TM9SF)
Ec32 ortholog	Ec-21_005980.2
Description	secretion of lysosomal enzymes
Cds size	240
COG category	I
BRITE	ko00000,ko00001,ko00194,ko04147

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789150.1357093-CDS-C-tenellus_contig10806:159..251	1680789150.1357093-CDS-C-tenellus_contig10806:159..251	Choristocarpus tenellus KU2346	CDS	C-tenellus_contig10806 160..251 -
1680789150.1491635-CDS-C-tenellus_contig10806:594..742	1680789150.1491635-CDS-C-tenellus_contig10806:594..742	Choristocarpus tenellus KU2346	CDS	C-tenellus_contig10806 595..742 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig10806.1.1	prot_C-tenellus_contig10806.1.1	Choristocarpus tenellus KU2346	polypeptide	C-tenellus_contig10806 160..742 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-tenellus_contig10806:160..742-
coding sequence from alignment at C-tenellus_contig10806:160..742-

protein sequence of mRNA_C-tenellus_contig10806.1.1

>prot_C-tenellus_contig10806.1.1 ID=prot_C-tenellus_contig10806.1.1|Name=mRNA_C-tenellus_contig10806.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=80bp
QESYPYYRLPYCLPNPSSGEVVNKKKRAGLGEILAGNKLRSSGFDIKYKV
SQPKTELCTADLQGDSVEMFKQAVRSTMP*

mRNA from alignment at C-tenellus_contig10806:160..742-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-tenellus_contig10806.1.1 ID=mRNA_C-tenellus_contig10806.1.1|Name=mRNA_C-tenellus_contig10806.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=583bp|location=Sequence derived from alignment at C-tenellus_contig10806:160..742- (Choristocarpus tenellus KU2346)
CAGGAGTCCTACCCATACTACCGGTTGCCCTACTGCCTTCCCAACCCCTC
AAGCGGTGAGGTGGTGAACAAGAAAAAGAGAGCCGGGTTGGGGGAAATTC
TTGCTGGAAACAAGCTTCGCAGCAGTGGTTTTGATATCAAGTACAAAGGT
GAGTCTGGGATTGAATTAGGGTGTAACCGTGACGAGATTTGCAGGCAAAG
CTTAAGGGTTGAACCCGCCTTGTAATGTTTTTTATTTTATTTTTTGCTCA
GTTGCTGCAAGAATTGACCTTGACCTTTCTACTACTGGCCCTCTTGACGA
CTACTCCCCTTCCCTCACTCGCCGCCTCTATGTTCCACGATATTTTGTCA
TACGTATGTTTTTCTGTGGGTCTGGCCTTTCGTTGTGTGCGCTCTGCTCG
ATGGGACGTGGGGCGGGGGGGTGATGTTGTTTTTTGTGTACATGCGTGCT
GTGCTGTTTTGTTTTATTTTATTTTTGTCTGCCTTCATCAGTGTCCCAGC
CGAAGACCGAACTGTGCACTGCCGATCTCCAAGGGGACAGTGTCGAGATG
TTTAAACAGGCGGTACGTTCAACAATGCCATGA

Coding sequence (CDS) from alignment at C-tenellus_contig10806:160..742-

>mRNA_C-tenellus_contig10806.1.1 ID=mRNA_C-tenellus_contig10806.1.1|Name=mRNA_C-tenellus_contig10806.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=240bp|location=Sequence derived from alignment at C-tenellus_contig10806:160..742- (Choristocarpus tenellus KU2346)
CAGGAGTCCTACCCATACTACCGGTTGCCCTACTGCCTTCCCAACCCCTC
AAGCGGTGAGGTGGTGAACAAGAAAAAGAGAGCCGGGTTGGGGGAAATTC
TTGCTGGAAACAAGCTTCGCAGCAGTGGTTTTGATATCAAGTACAAAGTG
TCCCAGCCGAAGACCGAACTGTGCACTGCCGATCTCCAAGGGGACAGTGT
CGAGATGTTTAAACAGGCGGTACGTTCAACAATGCCATGA