mRNA_C-tenellus_contig10803.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10803.1.1
Unique NamemRNA_C-tenellus_contig10803.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10803.1.1 vs. uniprot
Match: A0A7S1V082_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V082_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.250e-7
Identity = 35/93 (37.63%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:   22 LVAMALFAISAE-AFVGSPVRVNSRTPALFSRLSMSKDQHPEIEVAEKAALEATKKFGVSSKEAQLAWDFYEEVAAQDNSVATLPPLDDSCDV 297
            ++ +ALFA  A   F  +P  +  +   + + L  ++   P+  V  + AL+AT  +G+ S EA++AWD  EE  A DNSVATLP +D+ C V
Sbjct:    6 IITLALFATKATLGFTTAPAFLIKQQQVMTTALQATR---PDTAVLVEDALKATAAYGIESAEARVAWDIVEEADASDNSVATLPSMDEECSV 95
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10803.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S1V082_9STRA1.250e-737.63Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10803contigC-tenellus_contig10803:4499..5431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog35128.Thaps20804
PFAMsCP12
Model size312
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorychloroplast
Exons2
Evalue3.73e-06
EggNOG OGs2EAQA@1|root,2SGXD@2759|Eukaryota,2XDB6@2836|Bacillariophyta
DescriptionCP12 domain
Cds size309
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789150.0477104-UTR-C-tenellus_contig10803:4498..45011680789150.0477104-UTR-C-tenellus_contig10803:4498..4501Choristocarpus tenellus KU2346UTRC-tenellus_contig10803 4499..4501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789150.0603137-CDS-C-tenellus_contig10803:4501..46481680789150.0603137-CDS-C-tenellus_contig10803:4501..4648Choristocarpus tenellus KU2346CDSC-tenellus_contig10803 4502..4648 +
1680789150.0717306-CDS-C-tenellus_contig10803:5269..54311680789150.0717306-CDS-C-tenellus_contig10803:5269..5431Choristocarpus tenellus KU2346CDSC-tenellus_contig10803 5270..5431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10803.1.1prot_C-tenellus_contig10803.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10803 4502..5431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10803.1.1

>prot_C-tenellus_contig10803.1.1 ID=prot_C-tenellus_contig10803.1.1|Name=mRNA_C-tenellus_contig10803.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=103bp
MFARCVLVAMALFAISAEAFVGSPVRVNSRTPALFSRLSMSKDQHPEIEV
AEKAALEATKKFGVSSKEAQLAWDFYEEVAAQDNSVATLPPLDDSCDVSG
HSM
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mRNA from alignment at C-tenellus_contig10803:4499..5431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10803.1.1 ID=mRNA_C-tenellus_contig10803.1.1|Name=mRNA_C-tenellus_contig10803.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=933bp|location=Sequence derived from alignment at C-tenellus_contig10803:4499..5431+ (Choristocarpus tenellus KU2346)
ATCATGTTCGCCAGGTGTGTGCTTGTAGCCATGGCCCTGTTCGCCATCAG
CGCGGAGGCCTTCGTGGGTTCCCCTGTCAGGGTCAATTCCCGTACACCAG
CACTCTTCTCCCGTTTGTCCATGAGCAAAGATCAGCACCCTGAGATCGAG
GTGAGCCTGTATATGCCAACGAGTAGGATTCATGATGGTGTATTAGCATG
TCCTATTTTTATGTTAGACTCTGTGTCAACTAAAGATCAACGTGGTCCTA
CCTGGACACAGTGGTGATTGCACGTGATGACGTGTGTTCCTTGTATTGCA
CGCAACTTGTTTCCAGACTGTTTTTCCCTAGTATACGTTTGTGATAGTAC
TTAAGTGGTCAGGGACTATCACATGAGCTTCGTGAGGGGCGATCAACGCA
TGACCTAAACCATGGTCACATAACTTCATTTCGTCAGTGTCTAGTTCTCG
ACGACGAGGACAATGTGTGGGTCCAGGGTTGGATGTGTTTGACAAAACCT
GACGGAGAGTGTAGTAAACTTGCTTAGGAGTGAGGAAATGCCTTTCCCAT
GGGAACCCAGCGCAAGAGGGCACGGTTTAGTAGTTGAGGCGCGGCTACGT
TGATGTCCTGTGAGATTTATGTAGGTCTCGCCGATTGCTCTGACAACGTG
TTGGCTGATGCAGTAACTCTCCAGTTTATGTCATGCTGTAGTGATATTCA
GTCCCAGCACCCTCACCTCACAAATATGAACATCGAAGACTTCCGCGTTC
TATGCACCTGGGAAAACCTAGGTTGCCGAGAAGGCTGCGTTGGAAGCTAC
CAAGAAGTTTGGGGTATCAAGCAAGGAGGCCCAACTGGCCTGGGACTTTT
ACGAGGAGGTCGCCGCTCAGGACAACTCAGTCGCCACACTCCCCCCCCTC
GACGACAGCTGTGATGTGAGTGGGCATTCTATG
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Coding sequence (CDS) from alignment at C-tenellus_contig10803:4499..5431+

>mRNA_C-tenellus_contig10803.1.1 ID=mRNA_C-tenellus_contig10803.1.1|Name=mRNA_C-tenellus_contig10803.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=309bp|location=Sequence derived from alignment at C-tenellus_contig10803:4499..5431+ (Choristocarpus tenellus KU2346)
ATGTTCGCCAGGTGTGTGCTTGTAGCCATGGCCCTGTTCGCCATCAGCGC
GGAGGCCTTCGTGGGTTCCCCTGTCAGGGTCAATTCCCGTACACCAGCAC
TCTTCTCCCGTTTGTCCATGAGCAAAGATCAGCACCCTGAGATCGAGGTT
GCCGAGAAGGCTGCGTTGGAAGCTACCAAGAAGTTTGGGGTATCAAGCAA
GGAGGCCCAACTGGCCTGGGACTTTTACGAGGAGGTCGCCGCTCAGGACA
ACTCAGTCGCCACACTCCCCCCCCTCGACGACAGCTGTGATGTGAGTGGG
CATTCTATG
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