mRNA_C-tenellus_contig10798.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10798.2.1
Unique NamemRNA_C-tenellus_contig10798.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10798.2.1 vs. uniprot
Match: A0A7S2RLZ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLZ2_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.790e-13
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   28 ILNPYYRSPWSKKVVDSVRVEEGEGLGPRKELFSLLAAQLQNSWRRM 168
            +L PYYRS + KK V+   VEEGEGLGPRKELFSL++AQLQ SWRR+
Sbjct:  164 LLCPYYRSAFGKKTVEGQAVEEGEGLGPRKELFSLVSAQLQASWRRV 210
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BLAST of mRNA_C-tenellus_contig10798.2.1 vs. uniprot
Match: A0A7S2RM16_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RM16_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.020e-12
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   28 ILNPYYRSPWSKKVVDSVRVEEGEGLGPRKELFSLLAAQLQNSWRRM 168
            +L PYYRS + KK V+   VEEGEGLGPRKELFSL++AQLQ SWRR+
Sbjct:  266 LLCPYYRSAFGKKTVEGQAVEEGEGLGPRKELFSLVSAQLQASWRRV 312
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BLAST of mRNA_C-tenellus_contig10798.2.1 vs. uniprot
Match: A0A7S2B4K7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B4K7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.930e-12
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   28 ILNPYYRSPWSKKVVDSVRVEEGEGLGPRKELFSLLAAQLQNSWR 162
            +L PYYRSP+ KKV +   VEEGEGLGPRKEL+SLL+ +L +SWR
Sbjct:   50 VLCPYYRSPFGKKVSEGESVEEGEGLGPRKELYSLLSGRLHSSWR 94
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BLAST of mRNA_C-tenellus_contig10798.2.1 vs. uniprot
Match: A0A6H5KZJ7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZJ7_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.620e-11
Identity = 32/47 (68.09%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   22 ALILNPYYRSPWSKKVVDSVRVEEGEGLGPRKELFSLLAAQLQNSWR 162
            ALILNPYY S W KK +    VEEGEGLGPRKELF L A QL   WR
Sbjct: 1715 ALILNPYYLSSWGKKKILGQCVEEGEGLGPRKELFELAARQLSERWR 1761
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BLAST of mRNA_C-tenellus_contig10798.2.1 vs. uniprot
Match: D7G395_ECTSI (Possible MAPK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G395_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 6.710e-11
Identity = 32/50 (64.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:   13 LSPALILNPYYRSPWSKKVVDSVRVEEGEGLGPRKELFSLLAAQLQNSWR 162
            L+ ALILNPYY S W  K V    VEEGEGLGPRKELF L + QL   WR
Sbjct: 2032 LAEALILNPYYLSSWGNKKVLGQCVEEGEGLGPRKELFELASRQLSERWR 2081
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BLAST of mRNA_C-tenellus_contig10798.2.1 vs. uniprot
Match: A0A6G0LWI9_9STRA (HECT domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6G0LWI9_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.900e-9
Identity = 25/56 (44.64%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 TSQKLSPALILNPYYRSPWSKKVVDSVRVEEGEGLGPRKELFSLLAAQLQNSWRRM 168
            +S+K++P  +L P+++S + +K+VD V+VEEGEG GP KE F L+  QL + W+++
Sbjct: 1022 SSEKVTPNFLLFPFFKSSFGEKLVDGVKVEEGEGKGPLKEWFVLVGKQLASKWKQL 1077
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BLAST of mRNA_C-tenellus_contig10798.2.1 vs. uniprot
Match: A0A7S3ZUA9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZUA9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.560e-8
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   22 ALILNPYYRSPWSKKVVDSVRVEEGEGLGPRKELFSLLAAQLQNSW 159
            + ++ PYYR P+ +K V+   VEEGEGLGPRKELF+LL   +  SW
Sbjct: 1146 SFVVCPYYRVPFGQKYVEGSAVEEGEGLGPRKELFALLGGAVTRSW 1191
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BLAST of mRNA_C-tenellus_contig10798.2.1 vs. uniprot
Match: A0A833WPR6_PHYIN (HECT domain-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WPR6_PHYIN)

HSP 1 Score: 57.0 bits (136), Expect = 4.770e-8
Identity = 25/54 (46.30%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 TSQKLSPALILNPYYRSPWSKKVVDSVRVEEGEGLGPRKELFSLLAAQLQNSWR 162
            +S+K      L+P+++S + +K+VD V+VEEGEG GP KE F+L+ AQL + W+
Sbjct:  975 SSEKPISNFCLSPFFKSSFGEKLVDGVKVEEGEGKGPLKEWFTLVGAQLTSKWK 1028
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BLAST of mRNA_C-tenellus_contig10798.2.1 vs. uniprot
Match: W2RG80_PHYPN (HECT domain-containing protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2RG80_PHYPN)

HSP 1 Score: 55.8 bits (133), Expect = 1.220e-7
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 TSQKLSPALILNPYYRSPWSKKVVDSVRVEEGEGLGPRKELFSLLAAQLQNSWRRM 168
            +S K      L P+Y+S + +K+VD V+VEEGEG GP KE F+L+ +QL + W+++
Sbjct:  996 SSDKAISNFSLFPFYKSSFGEKLVDGVKVEEGEGKGPLKEWFTLVGSQLASKWKQV 1051
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BLAST of mRNA_C-tenellus_contig10798.2.1 vs. uniprot
Match: A0A662XRL3_9STRA (HECT domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRL3_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.110e-7
Identity = 23/46 (50.00%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   31 LNPYYRSPWSKKVVDSVRVEEGEGLGPRKELFSLLAAQLQNSWRRM 168
            L P+++S + +K+VD V+VEEGEG GP KE FSL+  Q+ + W+R+
Sbjct:  766 LFPFFKSSFGEKLVDGVKVEEGEGKGPLKEWFSLVGLQMASKWKRI 811
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10798.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A7S2RLZ2_9STRA5.790e-1370.21Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2RM16_9STRA1.020e-1270.21Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2B4K7_9STRA1.930e-1266.67Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6H5KZJ7_9PHAE2.620e-1168.09Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G395_ECTSI6.710e-1164.00Possible MAPK n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6G0LWI9_9STRA3.900e-944.64HECT domain-containing protein n=5 Tax=Phytophthor... [more]
A0A7S3ZUA9_9STRA2.560e-854.35Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A833WPR6_PHYIN4.770e-846.30HECT domain-containing protein n=1 Tax=Phytophthor... [more]
W2RG80_PHYPN1.220e-744.64HECT domain-containing protein n=7 Tax=Phytophthor... [more]
A0A662XRL3_9STRA3.110e-750.00HECT domain-containing protein (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10798contigC-tenellus_contig10798:4031..4198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G395
PFAMsPkinase
Model size168
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.1e-11
EggNOG OGsKOG0593@1|root,KOG0593@2759|Eukaryota
Ec32 ortholog descriptionSerine/threonine-protein kinase and HECT domain protein
Ec32 orthologEc-03_005020.1
Descriptioncyclin-dependent protein serine/threonine kinase activity
Cds size168
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789149.3632536-CDS-C-tenellus_contig10798:4030..41981680789149.3632536-CDS-C-tenellus_contig10798:4030..4198Choristocarpus tenellus KU2346CDSC-tenellus_contig10798 4031..4198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10798.2.1prot_C-tenellus_contig10798.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10798 4031..4198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10798.2.1

>prot_C-tenellus_contig10798.2.1 ID=prot_C-tenellus_contig10798.2.1|Name=mRNA_C-tenellus_contig10798.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=56bp
TSQKLSPALILNPYYRSPWSKKVVDSVRVEEGEGLGPRKELFSLLAAQLQ
NSWRRM
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mRNA from alignment at C-tenellus_contig10798:4031..4198-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10798.2.1 ID=mRNA_C-tenellus_contig10798.2.1|Name=mRNA_C-tenellus_contig10798.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=168bp|location=Sequence derived from alignment at C-tenellus_contig10798:4031..4198- (Choristocarpus tenellus KU2346)
ACATCTCAAAAGCTGTCGCCAGCACTGATCTTAAATCCATACTACCGATC
TCCCTGGAGCAAGAAGGTTGTTGACAGTGTAAGGGTGGAGGAGGGCGAGG
GCCTTGGGCCTAGGAAGGAGTTGTTCTCACTCCTTGCAGCGCAACTTCAG
AACAGTTGGCGGAGAATG
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Coding sequence (CDS) from alignment at C-tenellus_contig10798:4031..4198-

>mRNA_C-tenellus_contig10798.2.1 ID=mRNA_C-tenellus_contig10798.2.1|Name=mRNA_C-tenellus_contig10798.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=168bp|location=Sequence derived from alignment at C-tenellus_contig10798:4031..4198- (Choristocarpus tenellus KU2346)
ACATCTCAAAAGCTGTCGCCAGCACTGATCTTAAATCCATACTACCGATC
TCCCTGGAGCAAGAAGGTTGTTGACAGTGTAAGGGTGGAGGAGGGCGAGG
GCCTTGGGCCTAGGAAGGAGTTGTTCTCACTCCTTGCAGCGCAACTTCAG
AACAGTTGGCGGAGAATG
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