mRNA_C-tenellus_contig1079.5.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1079.5.1
Unique NamemRNA_C-tenellus_contig1079.5.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1079.5.1 vs. uniprot
Match: D7FWP9_ECTSI (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWP9_ECTSI)

HSP 1 Score: 519 bits (1337), Expect = 1.080e-165
Identity = 254/441 (57.60%), Postives = 323/441 (73.24%), Query Frame = 1
Query:    1 MIDPLRYRSLASQIEFDEVQSPLQCWQCVQRGDVSPAFFLCHDCGKVGSARPYCQPCFFNYHARKR-GKHEHKPHPIVGGEPVVVQTLEEGNGLTFSKMHEWVTLEYSLTTHDTPCKQD-----KQPLTFQSGCSGPCVHFQLLGCTDLGAADILGYSDPYCAVYWKDALVGVTTTKYMTLNPKWTNQTFILPMSENFQVALRD-ENIPLLFNDRAALPKLRIDVYDWDSLSKNDFLGRVLVSDADILSILRRARHDKTCEEERLSFPLGAKQSSGKLGLRVALHESKLLVHVVQGEDLPIADPFSLSDPYCKVYWNNEHIGSTEHINDTLCPSWDTEVFEVDIGPDGLKSVEQSRLRVECLDWDRIGSHDLLGQVELDGPQLLQLIESNGSNSLDGLLDENGKELGEVDINKIQNFIRKLKKSDVQGKGETDDMIVGVPQ 1302
            MIDPLRYRSL  Q+EFDE  SP+QC QC++ G  +PAFFLC++CG  G  RP+C+PCFF+YH  KR GK  HKPHPIV G+PV VQTL +G+G+TF+KMH+WVTL+Y LTT ++    +     KQPLTFQSGCSGPC+H QL GCT + AADI+G SDPYCAVYWK+  VG TTTK+MTLNPKW NQTF+LP++  F  AL   E    LFN  A LPKLRI++YDWD LSKNDFLG++ +SDA+IL ILR+ R  +  E + +SF L  KQS G+LG+RVAL  SKL VH+++ E++P ADPFSLSDPYC+V+WN+E +G T +INDTL P WD E+F   +  DG  SVE+S LRV CLDWD+ GS+D+LGQ+EL G Q+ QL+ES      D   D   + +GE D+ KI  F++  +++++   G    MIVGVPQ
Sbjct:    1 MIDPLRYRSLEEQLEFDEDNSPMQCKQCLRGGVSTPAFFLCYECGNTGDPRPFCEPCFFDYHLTKRKGKEGHKPHPIVQGDPVTVQTLADGDGVTFAKMHDWVTLDYILTTDESDVAVEDTFLAKQPLTFQSGCSGPCIHLQLRGCTGIAAADIMGASDPYCAVYWKNNFVGATTTKHMTLNPKWANQTFVLPLAAEFLAALDGGEGSSALFNAGALLPKLRIELYDWDRLSKNDFLGQISLSDAEILPILRQIRSGEADENQAISFDLKPKQSRGQLGIRVALLGSKLYVHIMEAENVPKADPFSLSDPYCEVFWNDELVGKTAYINDTLDPVWDLEIFAFKVDKDGPNSVEKSTLRVVCLDWDQFGSNDVLGQIELTGSQIKQLVESKDG---DEGADAGEQAMGEADMEKIFEFVQMFQENELDEAG-LGKMIVGVPQ 437          
BLAST of mRNA_C-tenellus_contig1079.5.1 vs. uniprot
Match: A0A835YR07_9STRA (C2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR07_9STRA)

HSP 1 Score: 269 bits (687), Expect = 4.240e-80
Identity = 124/246 (50.41%), Postives = 167/246 (67.89%), Query Frame = 1
Query:    1 MIDPLRYRSLASQIEFDEVQS--PLQCWQCVQRGDVSPAFFLCHDCGKVGSARPYCQPCFFNYHARKRGKHEHKPHPIVGGEPVVVQTLEEGNGLTFSKMHEWVTLEYSLTTHDTPCKQD-KQPLTFQSGCSGPCVHFQLLGCTDLGAADILGYSDPYCAVYWKDALVGVTTTKYMTLNPKWTNQTFILPMSENFQVALRDENIPLLFNDRAALPKLRIDVYDWDSLSKNDFLGRVLVSDADILSI 729
            MI+PL +RS A Q++F+ +     LQCW+C Q    +PA + C +CG+ G  RPYC+ CF +YH  KRG+  HKP PIV  + VVVQTL+EG+ +TF  MH+WVT+ Y+L ++++P   + K   +FQSGCSGPC+H QLLGC  L AAD+LG SDP+C +YW    VG TT +Y T NP+W NQTF+LP+   F  AL        F D AALP+L +DV+DWD    NDFLG++ +S AD+LS+
Sbjct:    1 MIEPLYHRSPAEQLQFEVIPDGDALQCWKCQQDKQNTPALYTCTNCGRNGVPRPYCKSCFDSYHLYKRGRAGHKPRPIVSEDAVVVQTLQEGDDVTFPAMHQWVTVHYTLRSNESPAVVERKDDFSFQSGCSGPCLHLQLLGCRGLPAADLLGASDPFCVIYWDGIRVGATTVRYFTTNPRWNNQTFVLPLEPAFIGALLGGEAEATFRDSAALPRLHVDVFDWDRFGGNDFLGQMQLSTADLLSL 246          
BLAST of mRNA_C-tenellus_contig1079.5.1 vs. uniprot
Match: F0YL32_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL32_AURAN)

HSP 1 Score: 167 bits (422), Expect = 1.870e-38
Identity = 122/413 (29.54%), Postives = 198/413 (47.94%), Query Frame = 1
Query:   58 QSPLQCWQCVQRGDVSPAFFLCHDCGKVGSARPYCQPCFFNYHARKRGKHEHKPHPIVGGEPVVVQTLEEGNGLTFSKMHEWVTLEYSL------TTHDTPCKQDKQPLTFQSGCSGPCVHFQLLGCTDLGAADILGYSDPYCAVYWKDALVGVTTTKYMTLNPKWTNQTFILPMSENFQVALRDENIPLLFNDRA------ALPKLRIDVYDWDSLSKNDFLGRVLVSDADILSILRRARHDKTCEEERLSFPLGAKQSSGKLGLRVA--LHESKLLVHVV----QGEDLPIADPFSLSDPYCKVYWNNEHIGSTEHINDTLCPSWDT-----EVFEV--------DIGPDGLK--------------SVEQSRLRVECLDWDRIGSHDLLGQVELDGPQLLQLIESNGSNS 1161
            QS +    C    DV+       +  +  S R +C+ C+  Y   K    + +   +V G+ VV QTLE G+   +  + + V++ Y +         D+   Q  + + F+SGCSGPC+H Q+L    +  A IL   DPYCAVYW++  VG T       +P W+ +TF++P+ EN  VA   E   L  N R         P LR+++YD++++ K+ F+G+V +S   I+ +L       T   E   +PL  K  +G + + +    H    + H+V      + L  AD FS SDPY   +W+ + +G +  I D   P W+       VFEV        D   D L+              S+++  L +E  D+DRIG H +LG++EL+G  + QL++ + ++S
Sbjct:  864 QSTMSFGWCRSVIDVARTQIRSRERSEKSSMRQFCEDCYEKY-KEKHKLSDKRERILVAGQGVVKQTLEHGDETHYPDVFDKVSILYEMRILGKTAVVDSTAMQGGRSIWFESGCSGPCLHVQILCANRVYQASILDVPDPYCAVYWENRFVGATQVIDGNTDPIWSGETFVVPL-EN-PVARWVERAALRGNKREHGNPKYVDPILRLEMYDYNTIFKDVFVGQVSLSPRQIVKVLA------TGGSEPRVYPLRPKMPTGTMRIAIGRTTHLKTGMTHIVIKVENCKKLARADTFSESDPYLAAFWDGQPLGESPVIYDCADPKWNECIFHFPVFEVSRVQLRDGDGTRDALRRSVSAPKSSQAMAQSLDRKTLLIEVRDYDRIGEHKILGEIELNGEAIAQLVKRSDASS 1267          
BLAST of mRNA_C-tenellus_contig1079.5.1 vs. uniprot
Match: A0A7R9Y9C9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9C9_9STRA)

HSP 1 Score: 150 bits (380), Expect = 3.610e-37
Identity = 87/256 (33.98%), Postives = 129/256 (50.39%), Query Frame = 1
Query:  490 LVGVTTTKYMTLNPKWTNQTFILPMSENFQVALRDE------------NIPLLFNDRAALPKLRIDVYDWDSLSKNDFLGRVLVSDADILSILRRAR-HDK---------------------------------TCEEERLSFPLGAKQSSGKLGLRVALHESKLLVHVVQGEDLPIADPFSLSDPYCKVYWNNEHIGSTEHINDTLCPSWDTEVFEVDIGPDGLKSVEQSRLRVECLDWDRIGSHDLLGQVELDG 1119
            L G T  KYM  + +WT+QTF+LP+  +F    +D+            ++  L ND   LP+LR+D++D+D  SKNDFLG++L+S  ++L ++     HDK                                   E +  + P   +++ G+L +++A H   + V + +G +L  ADPFSLSDPYCKVYWN E +G T+ I++TL P W  EV      P     +    LR+E  DWDR    DLLG  E+ G
Sbjct:    9 LAGTTPVKYMKRSGRWTDQTFVLPLDSSFLSIWQDKLGIDAGLGEERGDLRKLSND-PHLPRLRLDLFDYDKFSKNDFLGQILLSTHELLPLIDEENGHDKCSPPKAKLASRRSSLRHPMESLAFAAKAGQAGEAAEPDLQTLPWQPRRAQGELAIKLARHGDTVAVQICEGRNLEQADPFSLSDPYCKVYWNEELVGETKRIDNTLNPVWSNEVHRFQPKPAAANGI----LRLEVYDWDRFSEDDLLGDFEVGG 259          
BLAST of mRNA_C-tenellus_contig1079.5.1 vs. uniprot
Match: A0A6S8TQ69_9STRA (Peptidylprolyl isomerase n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8TQ69_9STRA)

HSP 1 Score: 140 bits (352), Expect = 9.490e-31
Identity = 84/291 (28.87%), Postives = 145/291 (49.83%), Query Frame = 1
Query:  334 DTPCKQDKQPLTFQSGCSGPCVHFQLLGCTDLGAADILGYSDPYCAVYWKDALVGVTTTKYMTLNPKWTNQTFILPMSENF-----QVALRDENIPLLFNDRAALPKLRIDVYDWDSLSKNDFLGRVLVSDADILSILRRARHDKTCEEERLSFPLGAKQSSGKLGLRVA--LH----ESKLLVHVVQGEDLPIADPFSLSDPYCKVYWNNEHIGSTEHINDTLCPSWDTEVFEVDIGPDGLKS----------VEQSRLRVECLDWDRIGSHDLLGQVELDGPQLLQLIE 1143
            D+   +  +P+ F+SGCSGPC+H Q+LG   +  A  L   DPYCAVYW+D   G T     T+ P WT +TF++P+         + ALR        + +   P LR +V+D ++  K+ F+G+V +S   I+ +L        C+ E   +PL  +  +G + +  A  +H     S +++ V   ++L  +   S +D Y   +W+N  +G +    ++  P W+  +F   + PD  K           +    L ++  ++DR+G H +LG+VE DG  + QL++
Sbjct:   11 DSTAMRGGRPIWFESGCSGPCIHVQVLGANRVYQASALDVPDPYCAVYWEDNFAGATQVVDGTVEPVWTGETFVVPVVNPVTHWVERAALRGSKRSHS-SSKYMEPLLRFEVFDHNTFFKDVFVGQVSLSAQQIVKVLA------DCDSESRIYPLRPRMPNGTMRVTAAQTIHIKTGMSHVIIKVEACKELSRSTDVSQNDSYLSAFWDNRPLGESPVARNSSNPQWENCIFHFPL-PDVTKDRGSTNNIARKLRNKTLLIQVREYDRVGEHSVLGEVEFDGTAINQLVK 293          
BLAST of mRNA_C-tenellus_contig1079.5.1 vs. uniprot
Match: A0A7S1UI18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UI18_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.040e-29
Identity = 83/236 (35.17%), Postives = 115/236 (48.73%), Query Frame = 1
Query:  625 AALPKLRIDVYDWDSLSKNDFLGRVLVSDADILSILRRARHDKT-------------------------------CEEERLSFPLGAKQSSGKLGLRVALHESKLLVHVVQGEDLPIADPFSLSDPYCKVYWNNEHIGSTEHINDTLCPSWDTEVFE--------------------------VDIGPDGL--------KSVEQSRLRVECLDWDRIGSHDLLGQVELDGPQLLQL 1137
            A LP+LR+D++D+D  SKNDFLG++L++  D+L ++     + T                                 E+RL  P   +++ G + L+VA  ++ + VHVV+  ++  ADPFSLSDPYCKVYWN E  G+T+ I+DTL P W  E+F+                          V  G D          +SV    LRVE  DWDR G HDLLG+V L G  L QL
Sbjct:   32 AFLPRLRLDLFDYDKFSKNDFLGQILLTTQDVLEMVDPELDEATKAMLEKFSPKKKGKKXXXXXXNAAPPPIPHDFPEQRL--PWQPRRAQGDIALKVAHKDNYIYVHVVEARNIEKADPFSLSDPYCKVYWNGELKGTTKRIDDTLNPVWTNEIFKFRPKAKASMLSNVGLFSALSRGGAALVPGGSDSAESEDDATERSVTDGVLRVEIYDWDRFGEHDLLGEVNLTGKVLQQL 265          
BLAST of mRNA_C-tenellus_contig1079.5.1 vs. uniprot
Match: A0A7S3NEV6_9STRA (Peptidylprolyl isomerase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NEV6_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.390e-16
Identity = 54/165 (32.73%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  349 QDKQPLTFQSGCSGPCVHFQLLGCTDLGAADILGYSDPYCAVYWKDALVGVTTTKYMTLNPKWTNQTFILPMSE-------NFQVALRDENIPLLFNDR-AALPKLRIDVYDWDSLSKNDFLGRVLVSDADILSILRRARHDKTCEEERLSFPLGAKQSSGKLGL 819
            +D +PL F SGCSGPC+H Q+L    L    I    DPYC VYW +  VG T+ +  T +P W  +T ++P+ +        F       ++P +  +  ++ P LRI+VYD ++  +++FLG+V ++   I+ IL +       E     + L  K +SG L L
Sbjct:    4 RDNRPLIFTSGCSGPCLHIQILSAHRLHRGSIFDIPDPYCVVYWNNRRVGKTSERQDTTDPVWEAETLVIPLQDPLMKNWLEFAALKGKTDVPKIVQETFSSHPGLRIEVYDNNTFRQDEFLGQVALTPPQIVRILAKD------EAAPRVYTLRPKSASGCLSL 162          
BLAST of mRNA_C-tenellus_contig1079.5.1 vs. uniprot
Match: A0A7S1TU30_9STRA (Peptidylprolyl isomerase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU30_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.920e-15
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 3
Query: 2469 WYQLKLKEEESASDLVQGSVDARFLFHTRGTVLRGLDIAVSHMSLGERAKVEVRSDYAFGEVYAGFEVPPYSTLVFDAQVMNIGQHNAKWFI 2744
            W+ L+  +E+S   +VQG    RFL H RG  LRGLD A+ H+SLG RA + +R D+A+ + Y   +VPP S + +D QV  IG+ NA+ F+
Sbjct:   97 WFPLRYTKEKSGEGMVQGWARLRFLLHRRGAALRGLDEALQHLSLGTRALIRLRHDFAYADSYVSTKVPPRSVIEYDLQVNQIGRRNARLFL 188          
BLAST of mRNA_C-tenellus_contig1079.5.1 vs. uniprot
Match: A0A6P8S4Z9_GEOSA (rasGAP-activating-like protein 1 isoform X2 n=1 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8S4Z9_GEOSA)

HSP 1 Score: 84.7 bits (208), Expect = 5.020e-13
Identity = 71/258 (27.52%), Postives = 117/258 (45.35%), Query Frame = 1
Query:  397 VHFQLLGCTDLGAADILGYSDPYCAVYWKDALVGVTTTKYMTLNPKWTNQTFILPMSENFQVALRDENIPLLFNDRAALPKLRIDVYDWDSLSKNDFLGRVLVSDADILSILRRARHDKTCEEERLSFPLGA------------KQSSGKLGLRVALHESK----LLVHVVQGEDLPIADPFSLSDPYCKVYWNNEHIGSTEHINDTLCPSWDTEVFEVDI---GPDGLKSVEQSRLRVECLDWDRIGSHDLLGQVEL 1113
            ++F+++   +L A D+ G SDPYC V   + +V  T T +  LNP W  +  +              ++P+ F++      L   V D D++  +D +G+V +                 C E   S P G             ++  G++ L + + E++    L  HV++  DL   D    SDP+ +V+ NN+ +  T  I  T  P WD EV E D+     +  +S E S + VE  DWD +G +D LG+VE+
Sbjct:    7 LYFRVVEGRNLPAKDVSGSSDPYCIVKVDNEIVARTATVWRNLNPFWGEEYTL--------------HLPMGFHN------LAFYVMDEDTIGHDDVIGKVSL-----------------CREYISSHPKGIDSWINLTRVDPDEEVQGEIYLELHVVENQQRRMLHCHVLEARDLAPRDISGTSDPFARVFCNNQTL-ETSIIKKTRFPHWD-EVLEFDLYLEADEVSESSEASVVSVEVWDWDMVGKNDFLGRVEV 225          
BLAST of mRNA_C-tenellus_contig1079.5.1 vs. uniprot
Match: A0A6P7Z8G3_9AMPH (rasGAP-activating-like protein 1 isoform X1 n=5 Tax=Gymnophiona TaxID=8445 RepID=A0A6P7Z8G3_9AMPH)

HSP 1 Score: 83.2 bits (204), Expect = 1.510e-12
Identity = 68/257 (26.46%), Postives = 119/257 (46.30%), Query Frame = 1
Query:  397 VHFQLLGCTDLGAADILGYSDPYCAVYWKDALVGVTTTKYMTLNPKWTNQTFILPMSENFQVALRDENIPLLFNDRAALPKLRIDVYDWDSLSKNDFLGRVLVSDADILSILRRARHDKTCEEERLSFPLGA------------KQSSGKLGLRVALHESK----LLVHVVQGEDLPIADPFSLSDPYCKVYWNNEHIGSTEHINDTLCPSWDTEV-FEVDIGPDGL-KSVEQSRLRVECLDWDRIGSHDLLGQVEL 1113
            ++F+++   +L A D+ G SDPYC V   + +V  T T +  LNP W  +  +              ++P+ F++      L   V D D++  +D +G++ +                 C E   S P G             ++  G++ L + + +++    L  HV++  DL   D    SDP+ +V+ NN+ +  T  I  T  P WD  + F++D+  D + +S E S + VE  DWD +G +D LG+VE+
Sbjct:    7 LYFRVVEGRNLPAKDVSGSSDPYCIVKVDNEIVARTATVWRNLNPFWGEEYTL--------------HLPMGFHN------LAFYVMDEDTIGHDDVIGKISL-----------------CREYISSHPKGIDSWINLTRVDPDEEVQGEIYLELHVVDNQQRRMLHCHVLEARDLAPRDISGTSDPFTRVFCNNQTL-ETSIIKKTRFPHWDEVLEFDLDLEADEVSESSEVSVVSVEVWDWDMVGKNDFLGRVEV 225          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1079.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWP9_ECTSI1.080e-16557.60Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YR07_9STRA4.240e-8050.41C2 domain-containing protein (Fragment) n=1 Tax=Tr... [more]
F0YL32_AURAN1.870e-3829.54Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7R9Y9C9_9STRA3.610e-3733.98Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A6S8TQ69_9STRA9.490e-3128.87Peptidylprolyl isomerase n=4 Tax=Pelagomonas calce... [more]
A0A7S1UI18_9STRA3.040e-2935.17Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3NEV6_9STRA1.390e-1632.73Peptidylprolyl isomerase n=1 Tax=Aureoumbra lagune... [more]
A0A7S1TU30_9STRA2.920e-1544.57Peptidylprolyl isomerase n=1 Tax=Phaeomonas parva ... [more]
A0A6P8S4Z9_GEOSA5.020e-1327.52rasGAP-activating-like protein 1 isoform X2 n=1 Ta... [more]
A0A6P7Z8G3_9AMPH1.510e-1226.46rasGAP-activating-like protein 1 isoform X1 n=5 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1079contigC-tenellus_contig1079:8636..12760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWP9
PFAMsC2
Model size2768
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue3.7e-170
EggNOG OGsKOG2059@1|root,KOG2059@2759|Eukaryota
Ec32 ortholog descriptionC2 and FKBP domain protein
Ec32 orthologEc-06_001470.1
Descriptionras GTPase-activating protein
Cds size1956
COG categoryJ
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1079.5.1prot_C-tenellus_contig1079.5.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1079 9739..12760 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789148.9887903-UTR-C-tenellus_contig1079:8635..92861680789148.9887903-UTR-C-tenellus_contig1079:8635..9286Choristocarpus tenellus KU2346UTRC-tenellus_contig1079 8636..9286 -
1680789149.000298-UTR-C-tenellus_contig1079:9577..97381680789149.000298-UTR-C-tenellus_contig1079:9577..9738Choristocarpus tenellus KU2346UTRC-tenellus_contig1079 9578..9738 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789149.019382-CDS-C-tenellus_contig1079:9738..98841680789149.019382-CDS-C-tenellus_contig1079:9738..9884Choristocarpus tenellus KU2346CDSC-tenellus_contig1079 9739..9884 -
1680789149.0292737-CDS-C-tenellus_contig1079:10056..101811680789149.0292737-CDS-C-tenellus_contig1079:10056..10181Choristocarpus tenellus KU2346CDSC-tenellus_contig1079 10057..10181 -
1680789149.0384567-CDS-C-tenellus_contig1079:10314..110811680789149.0384567-CDS-C-tenellus_contig1079:10314..11081Choristocarpus tenellus KU2346CDSC-tenellus_contig1079 10315..11081 -
1680789149.0473971-CDS-C-tenellus_contig1079:11842..127601680789149.0473971-CDS-C-tenellus_contig1079:11842..12760Choristocarpus tenellus KU2346CDSC-tenellus_contig1079 11843..12760 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1079.5.1

>prot_C-tenellus_contig1079.5.1 ID=prot_C-tenellus_contig1079.5.1|Name=mRNA_C-tenellus_contig1079.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=652bp
MIDPLRYRSLASQIEFDEVQSPLQCWQCVQRGDVSPAFFLCHDCGKVGSA
RPYCQPCFFNYHARKRGKHEHKPHPIVGGEPVVVQTLEEGNGLTFSKMHE
WVTLEYSLTTHDTPCKQDKQPLTFQSGCSGPCVHFQLLGCTDLGAADILG
YSDPYCAVYWKDALVGVTTTKYMTLNPKWTNQTFILPMSENFQVALRDEN
IPLLFNDRAALPKLRIDVYDWDSLSKNDFLGRVLVSDADILSILRRARHD
KTCEEERLSFPLGAKQSSGKLGLRVALHESKLLVHVVQGEDLPIADPFSL
SDPYCKVYWNNEHIGSTEHINDTLCPSWDTEVFEVDIGPDGLKSVEQSRL
RVECLDWDRIGSHDLLGQVELDGPQLLQLIESNGSNSLDGLLDENGKELG
EVDINKIQNFIRKLKKSDVQGKGETDDMIVGVPQLETCMEVTAQDVPASA
DVGESDEEELESQSNADKDSQAETSDIKKSNEDPSLEDSASGVMNKEGEK
KQDERPDSAEKQDLKGLDDSLGVSAEQYEHMMKDGPNMSLDHTQAGQSNG
DSPTALLYRDGNSLVETGPGASELCIFLCKQSLYIYDHRGELLDCKEGSF
FQISLFVALGDRTVLWANSILQGGMLGRVIHSGLDEVLRILQFVAHFLPV
F*
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mRNA from alignment at C-tenellus_contig1079:8636..12760-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1079.5.1 ID=mRNA_C-tenellus_contig1079.5.1|Name=mRNA_C-tenellus_contig1079.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4125bp|location=Sequence derived from alignment at C-tenellus_contig1079:8636..12760- (Choristocarpus tenellus KU2346)
ATGATAGACCCACTAAGGTATCGATCCTTGGCGAGTCAAATAGAGTTCGA CGAGGTTCAGTCTCCACTTCAGTGTTGGCAATGCGTCCAACGTGGTGATG TCTCTCCAGCTTTTTTCCTCTGCCACGATTGTGGTAAGGTCGGGAGTGCG AGGCCGTACTGCCAACCATGCTTTTTCAATTATCACGCACGCAAGCGGGG AAAACATGAGCATAAACCCCACCCTATCGTGGGGGGGGAACCAGTCGTTG TTCAGACTCTCGAAGAAGGAAATGGCTTGACGTTCAGCAAAATGCATGAA TGGGTCACACTGGAGTACTCCTTGACAACGCACGATACCCCGTGCAAACA AGACAAACAACCCCTTACGTTTCAGAGCGGATGCTCCGGTCCTTGTGTCC ATTTTCAGTTGCTGGGGTGCACCGACCTTGGTGCGGCTGATATTTTGGGA TACAGTGATCCATACTGTGCGGTGTACTGGAAAGATGCCCTGGTGGGAGT CACCACCACGAAGTACATGACGCTAAATCCAAAGTGGACAAACCAGACAT TCATTCTCCCTATGTCGGAGAACTTCCAGGTTGCCCTGCGTGACGAAAAT ATACCCCTACTCTTCAACGACCGTGCCGCTCTACCTAAGCTACGCATAGA TGTTTATGACTGGGATAGTCTTTCCAAGAACGATTTCCTTGGGCGTGTAC TAGTCAGTGACGCCGACATTTTAAGCATCCTCCGAAGGGCACGCCATGAC AAAACGTGTGAAGAGGAGCGCTTGTCATTTCCTCTTGGGGCGAAGCAAAG CAGCGGCAAGCTGGGGCTTAGAGTAGCTTTACACGAGAGCAAGCTTCTGG TTCATGTGGTACAGGGAGAAGACTTGCCCATCGCCGATCCCTTCAGCTTG AGTGATCCATACTGCAAGGTGGGCGTTTAACTTACTTCAGGAGGGCACTC GCAAATAGCAGGTACAACAGGCTCCATCGTGTTCTCTTCAGGTTGTTGTA GCAAAGAACCGCCGCCACAGGTAGCAGTAAGGTAGTCAAGACATACACAT TTCTCCAGATCTAGCAGCTTCAAAGTATTTTTTCCGAACAAGTTGTGGTA GTGTCCGACAACTCATGCATACATTTAAGTACATATTTGTCACAACAATC TTTCAACTTCAATCTAGACCATGAAAATCAAGTCAGGATTATACTGGAAT CTGCATGACGAACTCTACAATGATCCACAGCCATATCTTCATGCTCGACC ACATCAGGGTGATATATTTATGAATGAGAACTTGTCTTGCAAATAAACTC TAGAAGAATTGCTCCTACCAACATGAAAGTATTGAAAGACCATAGCATTT GATATTTTGTTGATTTCATGTCTTCTTATTTCGTGTGAGGTCCTATGCAT TTGTGGGAACACAGCAAATCCCAATGCACAAATAGTAAAAGAGATGTGAT CATTGTTTCAGTCAAGAGTCAGAGGTTATCTGGTTACGCAAGAGGTAAGT GGTGCAGGCATTCACATCAACACCATCAAAAACATTTACAAGAAGAATTT ATTTTGAACTCATTAGAAAGGCTTGTGTGGAATACACATTCCTTGCAAAT AATACACTCAGGAAGGGGAATTGCAGTCAACCTTTGACCAATAGTTGAAC TCTAAGTTGACCGTGCCTGCTACCCATAGGTGTATTGGAACAACGAACAC ATCGGCTCCACAGAACATATCAATGATACGCTATGCCCATCGTGGGACAC GGAGGTGTTTGAGGTAGACATTGGCCCTGACGGACTCAAGTCTGTTGAGC AGTCTAGACTCCGTGTCGAGTGCTTAGATTGGGATCGCATTGGCAGTCAC GATCTGCTCGGTCAGGTAGAGCTGGACGGCCCGCAGCTCCTACAGCTGAT AGAGAGTAATGGTAGTAATAGTCTTGACGGATTACTAGATGAAAATGGGA AGGAGCTGGGAGAAGTAGATATAAATAAAATCCAGAACTTCATTCGAAAG CTCAAGAAGAGTGATGTACAAGGTAAAGGTGAAACTGACGATATGATTGT TGGGGTTCCACAGTTAGAGACTTGCATGGAGGTTACAGCCCAGGATGTTC CTGCCTCAGCAGATGTTGGGGAAAGCGACGAGGAAGAATTAGAGAGTCAG TCAAATGCGGACAAGGACAGTCAGGCAGAAACATCGGACATCAAAAAGAG CAATGAGGATCCCTCTTTGGAGGATTCTGCTTCCGGTGTGATGAACAAAG AAGGTGAGAAGAAACAGGATGAGAGACCTGATTCTGCAGAGAAGCAGGAT CTGAAAGGGTTGGACGATTCCCTTGGGGTGTCAGCAGAACAATATGAGCA CATGATGAAGGATGGTCCAAACATGAGCCTTGATCATACCCAAGCGGGTC AATCAAATGGGGATTCTCCAACAGCTCTCCTGTATCGGGACGGTAAGTGA GGTTTATTGATTGAATCGATTGGCTTCATTTCCTTATGTAACATACACTA CATACAACATGGTGGGTGCATACTATACACACACACACCCTTGCATGTTC TTGACATGCAAGACTATTTCATTTCTCAGTTCATTGGTGGAGACTGGCCC TGGAGCAAGTGAGCTGTGTATTTTCCTTTGCAAGCAATCTCTGTATATAT ATGACCATCGTGGAGAGTTGCTTGACTGCAAAGAAGGGAGTTTTTTTCAA ATCTGTTGCTCCTAAATTCCATCCAGAAAGATCAGGAGCCTTGCCGAGCT TGATGAATATGGAGTAGTAATCGATCGTAATACTTCAAAGCAATGAGCTT AAACTAATTGGCCAAACATTGCAAAAAATATCAACTGCTGTGCCTTACAA CAACAAAAAAGTCCTGTCACGGTAAGCACTTTTTGTTGCCTTAGGGGATA GGACTGTGCTGTGGGCCAATAGTATACTACAGGGAGGTATGTTAGGTCGG GTTATCCACTCGGGGCTTGATGAGGTGTTGAGGATACTGCAGTTTGTCGC CCATTTTTTACCTGTATTCTGAAGGCTGTACCATCAAAAGCAGATGTAGG AAGTACATTAGGCAGTTGCGGTGTTGTTGATATTACATTATTATGCCTGG TTGTGGCAATTCGGGAGGTGCTGCTGGCATCAGGGTTGACCTTTTTTATC TCTTTATCTACCTTGAGCCAATTTTTGCCCTCAGTAGTTAGGTCCGTTTT TTCATTACTCAAATAATTTCAAATCCTAACCACTTTATAACGCCATTTCT ACAACTGAGAACTAGCCAAAATTCTCAAAACGATGCTGTGTTCTACCTTA CAATCTCTGTCCAAATATCCAGCCGTTTAATTCAAACGCCCAGAACAATA GTTACCTTGAGTAGTGAGTGTGACCTGATTTAGAGTGACACCATCTGAGT TTGGGGCATCATCTGCATTCATGAACAGTTGACCATACATTAATAAATGA ACATCAGTTAGCTCATGGTGTTAGAATAGCAATAGACTACCACAACATCC TGGGTGTTTACCTTCCCATCAAGCACGGATCACGCACCAACATGACCTTC TGCTACACACATGCATGATCACAGCACACGTCAAGCGCTTTGAGAAAGAC AGAGGCATCCTGGTTGAATATCAGGATAACAACACTCAACAATGGATAGT CATCACCCTCATCCCCAGCCTCAAGATCAAGGAAAAGCCTCGGGTTGTAC TGAGTCCCTTTCAAAGGATTCGGCAAAAGATGCCCTCTCTCTTCCATCTG CACAACACCATACTCCAGGTTAAGAGATCCCCTAAAGCTCTGCTTGAGGT CAGCATGGAGGGCAGTCAGATGCAGTGGTACCAACTCAAGCTCAAAGAAG AGGAGAGTGCCTCTGACTTGGTACAAGGTTCGGTTGATGCTCGCTTCCTC TTCCACACACGGGGAACTGTGCTTAGGGGGCTGGACATAGCCGTTTCACA CATGAGCCTCGGAGAGAGGGCAAAGGTTGAGGTACGATCTGACTATGCCT TTGGGGAGGTGTATGCAGGGTTTGAGGTGCCACCATACAGCACCCTGGTC TTTGATGCACAGGTCATGAATATCGGTCAGCATAATGCAAAGTGGTTCAT TCGAAGACGAGGTGCCAGAGAGAAG
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Coding sequence (CDS) from alignment at C-tenellus_contig1079:8636..12760-

>mRNA_C-tenellus_contig1079.5.1 ID=mRNA_C-tenellus_contig1079.5.1|Name=mRNA_C-tenellus_contig1079.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1956bp|location=Sequence derived from alignment at C-tenellus_contig1079:8636..12760- (Choristocarpus tenellus KU2346)
ATGATAGACCCACTAAGGTATCGATCCTTGGCGAGTCAAATAGAGTTCGA
CGAGGTTCAGTCTCCACTTCAGTGTTGGCAATGCGTCCAACGTGGTGATG
TCTCTCCAGCTTTTTTCCTCTGCCACGATTGTGGTAAGGTCGGGAGTGCG
AGGCCGTACTGCCAACCATGCTTTTTCAATTATCACGCACGCAAGCGGGG
AAAACATGAGCATAAACCCCACCCTATCGTGGGGGGGGAACCAGTCGTTG
TTCAGACTCTCGAAGAAGGAAATGGCTTGACGTTCAGCAAAATGCATGAA
TGGGTCACACTGGAGTACTCCTTGACAACGCACGATACCCCGTGCAAACA
AGACAAACAACCCCTTACGTTTCAGAGCGGATGCTCCGGTCCTTGTGTCC
ATTTTCAGTTGCTGGGGTGCACCGACCTTGGTGCGGCTGATATTTTGGGA
TACAGTGATCCATACTGTGCGGTGTACTGGAAAGATGCCCTGGTGGGAGT
CACCACCACGAAGTACATGACGCTAAATCCAAAGTGGACAAACCAGACAT
TCATTCTCCCTATGTCGGAGAACTTCCAGGTTGCCCTGCGTGACGAAAAT
ATACCCCTACTCTTCAACGACCGTGCCGCTCTACCTAAGCTACGCATAGA
TGTTTATGACTGGGATAGTCTTTCCAAGAACGATTTCCTTGGGCGTGTAC
TAGTCAGTGACGCCGACATTTTAAGCATCCTCCGAAGGGCACGCCATGAC
AAAACGTGTGAAGAGGAGCGCTTGTCATTTCCTCTTGGGGCGAAGCAAAG
CAGCGGCAAGCTGGGGCTTAGAGTAGCTTTACACGAGAGCAAGCTTCTGG
TTCATGTGGTACAGGGAGAAGACTTGCCCATCGCCGATCCCTTCAGCTTG
AGTGATCCATACTGCAAGGTGTATTGGAACAACGAACACATCGGCTCCAC
AGAACATATCAATGATACGCTATGCCCATCGTGGGACACGGAGGTGTTTG
AGGTAGACATTGGCCCTGACGGACTCAAGTCTGTTGAGCAGTCTAGACTC
CGTGTCGAGTGCTTAGATTGGGATCGCATTGGCAGTCACGATCTGCTCGG
TCAGGTAGAGCTGGACGGCCCGCAGCTCCTACAGCTGATAGAGAGTAATG
GTAGTAATAGTCTTGACGGATTACTAGATGAAAATGGGAAGGAGCTGGGA
GAAGTAGATATAAATAAAATCCAGAACTTCATTCGAAAGCTCAAGAAGAG
TGATGTACAAGGTAAAGGTGAAACTGACGATATGATTGTTGGGGTTCCAC
AGTTAGAGACTTGCATGGAGGTTACAGCCCAGGATGTTCCTGCCTCAGCA
GATGTTGGGGAAAGCGACGAGGAAGAATTAGAGAGTCAGTCAAATGCGGA
CAAGGACAGTCAGGCAGAAACATCGGACATCAAAAAGAGCAATGAGGATC
CCTCTTTGGAGGATTCTGCTTCCGGTGTGATGAACAAAGAAGGTGAGAAG
AAACAGGATGAGAGACCTGATTCTGCAGAGAAGCAGGATCTGAAAGGGTT
GGACGATTCCCTTGGGGTGTCAGCAGAACAATATGAGCACATGATGAAGG
ATGGTCCAAACATGAGCCTTGATCATACCCAAGCGGGTCAATCAAATGGG
GATTCTCCAACAGCTCTCCTGTATCGGGACGGTAATTCATTGGTGGAGAC
TGGCCCTGGAGCAAGTGAGCTGTGTATTTTCCTTTGCAAGCAATCTCTGT
ATATATATGACCATCGTGGAGAGTTGCTTGACTGCAAAGAAGGGAGTTTT
TTTCAAATCTCACTTTTTGTTGCCTTAGGGGATAGGACTGTGCTGTGGGC
CAATAGTATACTACAGGGAGGTATGTTAGGTCGGGTTATCCACTCGGGGC
TTGATGAGGTGTTGAGGATACTGCAGTTTGTCGCCCATTTTTTACCTGTA
TTCTGA
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