mRNA_C-tenellus_contig10772.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10772.1.1
Unique NamemRNA_C-tenellus_contig10772.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10772.1.1 vs. uniprot
Match: D7FHP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHP9_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 8.400e-39
Identity = 80/139 (57.55%), Postives = 98/139 (70.50%), Query Frame = 1 
Query:    1 KVKIDDGTFFGGKDLRMWLCRKVSEELAFNAAIRGELEGERAALSKELDRLANVERETNQCLRDKTTQLEATETRLRDTLDALRSQKDFRIKEMFQNQTLKKEIDTLNEEVRSLVEKSNTQADIIAAVEKECEALRSAV 417
            KVKIDDGTFFGG+DL  WLC ++ +ELAF+A +R EL+GER A S+E DRL+  E+     LRDK ++LE  E RL DT +AL SQK  R+KEM   Q   KEI++L  EV  L  + N QAD+ AAVEKECEALRS V
Sbjct:   15 KVKIDDGTFFGGQDLVEWLCSRLKQELAFSAEVRKELQGERLASSREFDRLSENEKRLKNELRDKQSELETAERRLLDTTEALHSQKQLRMKEMLVTQGAAKEINSLQSEVSRLTNRINLQADVTAAVEKECEALRSTV 153
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10772.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHP9_ECTSI8.400e-3957.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10772contigC-tenellus_contig10772:1303..5129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size417
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_006260.1
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789148.2761588-CDS-C-tenellus_contig10772:1302..14251680789148.2761588-CDS-C-tenellus_contig10772:1302..1425Choristocarpus tenellus KU2346CDSC-tenellus_contig10772 1303..1425 -
1680789148.2870703-CDS-C-tenellus_contig10772:3949..40941680789148.2870703-CDS-C-tenellus_contig10772:3949..4094Choristocarpus tenellus KU2346CDSC-tenellus_contig10772 3950..4094 -
1680789148.2979755-CDS-C-tenellus_contig10772:4980..51291680789148.2979755-CDS-C-tenellus_contig10772:4980..5129Choristocarpus tenellus KU2346CDSC-tenellus_contig10772 4981..5129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10772.1.1prot_C-tenellus_contig10772.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10772 1303..5129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10772.1.1

>prot_C-tenellus_contig10772.1.1 ID=prot_C-tenellus_contig10772.1.1|Name=mRNA_C-tenellus_contig10772.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=139bp
KVKIDDGTFFGGKDLRMWLCRKVSEELAFNAAIRGELEGERAALSKELDR
LANVERETNQCLRDKTTQLEATETRLRDTLDALRSQKDFRIKEMFQNQTL
KKEIDTLNEEVRSLVEKSNTQADIIAAVEKECEALRSAV
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mRNA from alignment at C-tenellus_contig10772:1303..5129-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10772.1.1 ID=mRNA_C-tenellus_contig10772.1.1|Name=mRNA_C-tenellus_contig10772.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3827bp|location=Sequence derived from alignment at C-tenellus_contig10772:1303..5129- (Choristocarpus tenellus KU2346)
AAGGTAAAAATTGACGACGGAACATTTTTTGGAGGCAAAGACTTGCGAAT
GTGGCTGTGCAGGAAAGTCTCTGAAGAGCTGGCCTTCAATGCAGCCATTC
GTGGTGAACTTGAAGGAGAGAGGGCTGCCCTTAGCAAGGAACTAGACAGG
TATCACAGCCCTTTCGCGTTGCATACGGCTGAAGAGTGTTGAGCATGAAT
GATGTTCAATTTTTCATGACATATCAGTTTGTGGAACAGGAATTGTGCCA
AGGATATGTGAGCAAGGGGTACGATCGCACCCAAACCAGTAGTGGTACAT
TGGACAGCTAGGAGGACACCCACCTGAATGGCAGGGTGAAAGCTTTAGTC
GGAAATGAAAGATTTTTGGTTGTGAGGACACACCACAGAGCTCTGTCAAA
TATTTCTGGAGTCGTTCACTGACCCCTTAAAAAATTGATTAGGAGCAGAA
GATACAATGAAAGAGCCTAGTGTTTGCCTTTGGGTCAGTTCACTTGATGA
AGGAATTCACACCTTGACAGAGAGAGGGTCAGTGCATACACTGGGTCATA
CTGATTAGGTGCCATTCTGAACAGGATCCAAAATATTCATTTTTTGCACA
GTGATTTGAAAATGATTGAGAGGATCAGTTCTGATTATTATGTTTTTTTG
TCTTTACCACGGAAGGCTTTCTTTTGTGTCTACCTTAAAATGGCACATAT
GATCATAGAGATGTATCAATTACAACTTTTCCAAACAGTAACTTAAGCTC
CCCCTTCCTTGTCAAACAAACTCGGTGGCAACAAACAATCAAACAACCTC
AACGAAAGAAAAAAAAAAAAGAAAAAAAAAAGGAGGAAAATGCAACGATC
ATTTTTTTCTGAAGGAAATGGAATTTAAAAAAAAGAGTTATACTTTTTTA
TTTTATACATACATCGAAATCCCTTAAGGGATCACCCAAGCTTTAAAGTA
TTGTGAAGATCTAAGGTCCAGTCTCAAATCCACCACACCCCCTGTCCCAT
GTCCCGCTCCTCTGTGTCCATCATTGATCTGCCAGGCTAGCCAATGTAGA
AAGAGAGACGAACCAGTGTCTTCGTGACAAGACTACACAGCTAGAGGCCA
CTGAGACAAGGCTGAGGGATACCCTTGATGCCCTCAGGAGCCAGAAGGAT
TTCCGCATTAAAGAGATGTTTCAGAATCAGGTGCCCCTTATGGTTGCCAT
TTCTGCACTCCCAAAACTACCCATAAACACTAGCTCTCCCATAAGACTAA
ATCCCTAACAAAACACAAATGTTTTTGAGGGAGTTGGGTCGAAGGGGGAC
CCACAGGGAACCAATGAAATCGTATGAAATCATGGTATGATAAAAGTGGA
AACTAATATGAAAGGATGGTATGATAGATGTGGAACTGATATGAAATGAT
GGTTTGGTATAAGTGGAACTGATATGAAAGGATGGCATGATAGAAGTGGA
ACTGATATGAAATGATGGTTTGATAGAAGTGGAAACTAATATGAAATGAT
GGTTTGGTAGAAGTGGAAACTAATATGAAAGGATGGTATGATAGAAGTGG
AACTGATATGAAATGATGGTTTGGTATAAGTGGAAACTAATATGAAAGGA
TGGTATGATAGAAGTGGAACTGATACGAAATGATGGTTTGATAGAAGTGG
AAACTAATATGAAATGATGGTTTGGTAGAAGTGGAAACTAATATTAAAGG
ATGGTATGATAGAAGTGGAACTGATATGAAATTATGGTTTGGTAGAAGTG
GAACTGATATGAAAGGATGGCATGATAGAAGAAGTGGAACTGATATGTAA
TGATGGTTTGGTAGAAGTGGAACCGTCCAGAGTTGAAGAAAGCACTCATC
ATATTTCTTTGCAGGTGTGAGTTCAGCTGAACCTTGAATATTTTGAATAC
TGAGACACTTTGAATACTGACACAAAGTTGATGAGAGGTACCCAGAGGGG
GTTAAGGATGATTCTTAAGGATGATTCTTAAGGATGCTAACAATTACGTT
GCGAAATTCGTCTCTTTTTTTTTTAGATGCATATATATGCAGGAACTTTT
CTGAATCCTGTTGAAAATTTTCAAACAATGTAGAAAATCAACGCTCTCAA
GTCAAGCCTAGCACTTCCGATCCGTAGAAACATAGGTGAATTGCAATACT
ACTAGTAGACTGGAAAAAAAAAAAAGTTGAAATGAAAAAAACCCAAAAAA
CCCCTGGGTACACCTTGTTTACTTTGGCTCACAAGCAACGGATATCTGGG
ATCACTAAAGGTTGCATTGATATCTTGGATATTGGTAGGATTTTCTTTTT
TTTCCATTCCCACCAACAAAAAAACTATACCTTTATTTATCATTAAACTG
TACCTTTTTTGCATTGCCCTCCACTATTCCCCTGGTGCTGATTTTTTCCC
AGCATCAATAGTTGATTTTGAACAGTTTTTCAACAGCTGCCATGCACCTC
CCCGATATTTCATGTCCTCATCCTCACAACCTCTATTGCACCTAGACCGT
GATAGTCAGTGCTAATTTTTTTTCCCCCTTTTTATTATTTATTGTCACTA
TTAATTTTATTATTTTTGTTTTTATCTTATTTTATTTTATTTTGTTCCTG
TAACAAAGGCAATCCAAAATAGCCCTTGCTCCTTGCCTTCTGAGTGAACA
TGAAAAGGATTTTAAAAAAAACGTATATATATATATATATATATATATGT
CCATACTGCCGTGTATCTCCTCCCACGCTGCCCTTGTATCTCCTCCATCT
GTATGACATGCATCTCTGATATGGCAATGTAACATGATGTATGAACACTT
TTTCAGTTGCTAGGCACTGTTCAGAATGTGTGTTTGCACCTTGTCTTCAG
ACAGAAAAAAGTGCATTTTTCATGGCTTGTAGTACAGAAACGTGATGCTT
GCTCTCAATAGCCCACATCTAACCTGAGGTTGCTTACCGCACTGTTGAGG
ATAGTTGTCTCCTTGCTCGCTACAGGATATCTACTCCCCTTCGCGTTGGC
CCTAACCCTAACCCTAACCCTAAGCTTGTTCAGGGGGATAAACAAGAGTG
CAAGAGTATCTTAGGGAGTACCGCCGCGTCCATTTGGGACCAAAATCCAA
TGTTGCGATTTTGAAGTAATTTTGGCTATAGTGTTTGTGAGGAAGTGTCA
ATATCCTTGTTCCCGACACACCTTTTCATAGTTTTATACATGAAACCTAC
TCCAAAACGTATACATTTTAACAATTCCGAAACGTTTCAGAATTGGAAAA
ATTCTTAAAAAACGGTGGGAATTCAAGCCCGAAAAAAACGTTAAACAAAC
AGGGCTAAACTCGTAGTACCCTCCAAGATACTTTTACTCACAAGCACGAG
CACATTGGCTGCCAAGCATGCCTCTACCTCCTTCTTTCCATCGCTATTTT
TTTTTTGTTATGCTAGATTATTCCTTTTTTATTATTTCTTTTTTTTTTGC
GTCAGGTTCCCAGAATATCAGTCAAGGAAAGGGGTGGAGTTTTGCTGATT
CTACATTCTCCTTTCTAGCTCACCACTTCATTCATTTATTGTAAGTTTCC
TTGTGACTGAGGCAAGAAACCCTGCCGGCCTCGCCTCCTCCTCCTCCTAA
TACTCTCAGGCGATGTTTATCCTCAAAAAATACCCCCAAAATAACAATGC
TACTGATCAGCAAACAAGTTTCATTATAACTCAGTAGCCACCTCCGCACC
ACAGACCTTGAAAAAGGAGATTGACACGCTCAATGAGGAGGTTCGCAGTC
TAGTGGAGAAGAGCAACACACAGGCTGACATTATAGCAGCGGTGGAGAAG
GAGTGTGAAGCACTGCGCTCAGCTGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig10772:1303..5129-

>mRNA_C-tenellus_contig10772.1.1 ID=mRNA_C-tenellus_contig10772.1.1|Name=mRNA_C-tenellus_contig10772.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=417bp|location=Sequence derived from alignment at C-tenellus_contig10772:1303..5129- (Choristocarpus tenellus KU2346)
AAGGTAAAAATTGACGACGGAACATTTTTTGGAGGCAAAGACTTGCGAAT
GTGGCTGTGCAGGAAAGTCTCTGAAGAGCTGGCCTTCAATGCAGCCATTC
GTGGTGAACTTGAAGGAGAGAGGGCTGCCCTTAGCAAGGAACTAGACAGG
CTAGCCAATGTAGAAAGAGAGACGAACCAGTGTCTTCGTGACAAGACTAC
ACAGCTAGAGGCCACTGAGACAAGGCTGAGGGATACCCTTGATGCCCTCA
GGAGCCAGAAGGATTTCCGCATTAAAGAGATGTTTCAGAATCAGACCTTG
AAAAAGGAGATTGACACGCTCAATGAGGAGGTTCGCAGTCTAGTGGAGAA
GAGCAACACACAGGCTGACATTATAGCAGCGGTGGAGAAGGAGTGTGAAG
CACTGCGCTCAGCTGTG
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