mRNA_C-tenellus_contig1072.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1072.2.1
Unique NamemRNA_C-tenellus_contig1072.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1072.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1072contigC-tenellus_contig1072:1108..1325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size205
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789145.7272215-CDS-C-tenellus_contig1072:1107..12341680789145.7272215-CDS-C-tenellus_contig1072:1107..1234Choristocarpus tenellus KU2346CDSC-tenellus_contig1072 1108..1234 -
1680789145.736805-CDS-C-tenellus_contig1072:1247..12971680789145.736805-CDS-C-tenellus_contig1072:1247..1297Choristocarpus tenellus KU2346CDSC-tenellus_contig1072 1248..1297 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789145.7489593-UTR-C-tenellus_contig1072:1297..13251680789145.7489593-UTR-C-tenellus_contig1072:1297..1325Choristocarpus tenellus KU2346UTRC-tenellus_contig1072 1298..1325 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1072.2.1prot_C-tenellus_contig1072.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1072 1108..1297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1072.2.1

>prot_C-tenellus_contig1072.2.1 ID=prot_C-tenellus_contig1072.2.1|Name=mRNA_C-tenellus_contig1072.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=59bp
MLTPIPPSLTLYNPPQQLTPHSFQNTRQTPPPMPYRAFELEDIYPAQAFP
PNLLDVCL*
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mRNA from alignment at C-tenellus_contig1072:1108..1325-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1072.2.1 ID=mRNA_C-tenellus_contig1072.2.1|Name=mRNA_C-tenellus_contig1072.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=218bp|location=Sequence derived from alignment at C-tenellus_contig1072:1108..1325- (Choristocarpus tenellus KU2346)
AAACAATACAGCCAATTTCCTTGAATCCATGCTCACACCAATACCTCCGT
CCCTGACACTGTACAATCCTCCACAACACTCACTACACAACACTCACTCC
ACACTCATTCCAGAACACCCGCCAAACACCCCCTCCCATGCCATACCGAG
CCTTTGAGCTAGAAGACATCTACCCTGCCCAAGCTTTTCCTCCCAATTTG
CTTGATGTCTGCCTCTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig1072:1108..1325-

>mRNA_C-tenellus_contig1072.2.1 ID=mRNA_C-tenellus_contig1072.2.1|Name=mRNA_C-tenellus_contig1072.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=177bp|location=Sequence derived from alignment at C-tenellus_contig1072:1108..1325- (Choristocarpus tenellus KU2346)
ATGCTCACACCAATACCTCCGTCCCTGACACTGTACAATCCTCCACAACA
ACTCACTCCACACTCATTCCAGAACACCCGCCAAACACCCCCTCCCATGC
CATACCGAGCCTTTGAGCTAGAAGACATCTACCCTGCCCAAGCTTTTCCT
CCCAATTTGCTTGATGTCTGCCTCTAG
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